View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9596_low_18 (Length: 216)
Name: NF9596_low_18
Description: NF9596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9596_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 32 - 192
Target Start/End: Original strand, 4275375 - 4275536
Alignment:
| Q |
32 |
aagacagaacaagctacaagaacaaaagactgtagtagtggtagtgaaagttatatgttggttaaaaaccaataaaaaataacacaaactgaataaaggg |
131 |
Q |
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| T |
4275375 |
aagacagaacaagctacaagaacaaaagactgtagtagtggtagtgaaagttatatgttggttaaaaaccaataaaaaataacacaaactgaataaaggg |
4275474 |
T |
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| Q |
132 |
tattttaagactgtacggttatccctgtatttcc-gggggatgtctattctgtccccttcta |
192 |
Q |
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| T |
4275475 |
tattttaagactgtacggttatccctgtatttccggggggatgtctattctgtccccttcta |
4275536 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 34795068 - 34795028
Alignment:
| Q |
154 |
ccctgtatttccggg-ggatgtctattctgtccccttctat |
193 |
Q |
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| T |
34795068 |
ccctgtatttccgggcggatgtctattctgtccccttctat |
34795028 |
T |
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