View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9596_low_20 (Length: 212)

Name: NF9596_low_20
Description: NF9596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9596_low_20
NF9596_low_20
[»] chr5 (5 HSPs)
chr5 (38-154)||(21849541-21849657)
chr5 (38-154)||(21857455-21857571)
chr5 (59-190)||(42784369-42784503)
chr5 (121-190)||(5520607-5520679)
chr5 (139-190)||(15597591-15597645)
[»] chr7 (4 HSPs)
chr7 (107-190)||(36265575-36265661)
chr7 (139-190)||(28802534-28802588)
chr7 (139-187)||(19670504-19670555)
chr7 (106-190)||(30943317-30943404)
[»] chr3 (4 HSPs)
chr3 (139-190)||(5706724-5706775)
chr3 (121-190)||(28059473-28059545)
chr3 (121-190)||(28069898-28069970)
chr3 (55-187)||(29755041-29755178)
[»] chr6 (4 HSPs)
chr6 (121-190)||(22012893-22012965)
chr6 (103-190)||(27649978-27650061)
chr6 (138-190)||(27526189-27526244)
chr6 (139-190)||(13143004-13143058)
[»] chr2 (3 HSPs)
chr2 (121-190)||(2587156-2587228)
chr2 (121-190)||(44314820-44314892)
chr2 (121-190)||(44322999-44323071)
[»] chr1 (3 HSPs)
chr1 (121-190)||(14649210-14649282)
chr1 (121-190)||(14659000-14659072)
chr1 (141-190)||(42565065-42565117)
[»] chr8 (2 HSPs)
chr8 (153-190)||(18981378-18981415)
chr8 (138-190)||(26918452-26918507)
[»] chr4 (1 HSPs)
chr4 (138-190)||(54352992-54353047)


Alignment Details
Target: chr5 (Bit Score: 73; Significance: 2e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 21849541 - 21849657
Alignment:
Q  38 acaagagctgaaatcaatgtatgatgttcagattcggtgaggattgctctggtggttataatgaaaggcattgctaggaacggagttgactcgtcatatt 137  Q
    ||||||||||||||   ||||| |||||||||| ||||||||||||||| |||||||||   |||||||||||||||||||| |||||||||||||||||    
T  21849541 acaagagctgaaattgttgtatcatgttcagatccggtgaggattgctccggtggttatttcgaaaggcattgctaggaacgaagttgactcgtcatatt 21849640  T
Q  138 tgtgagttgatgacgat 154  Q
    ||||||||||| |||||    
T  21849641 tgtgagttgatcacgat 21849657  T

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Target: chr5; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 38 - 154
Target Start/End: Original strand, 21857455 - 21857571
Alignment:
Q  38 acaagagctgaaatcaatgtatgatgttcagattcggtgaggattgctctggtggttataatgaaaggcattgctaggaacggagttgactcgtcatatt 137  Q
    ||||||||||||||   ||||| |||||||||| ||||||||||||||| |||||||||   |||||||||||||||||||| |||||||||||||||||    
T  21857455 acaagagctgaaattgttgtatcatgttcagatccggtgaggattgctccggtggttatttcgaaaggcattgctaggaacgaagttgactcgtcatatt 21857554  T
Q  138 tgtgagttgatgacgat 154  Q
    ||||||||||| |||||    
T  21857555 tgtgagttgatcacgat 21857571  T

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Target: chr5; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 59 - 190
Target Start/End: Original strand, 42784369 - 42784503
Alignment:
Q  59 tgatgttcagattcggtgaggattgctctggtggttataatgaaaggcattgctaggaacggagttgactcgtcatatttgtgagttgatgacgat---t 155  Q
    ||||||||||||||||||   ||| ||| |||||| ||   |||||||||  |||||||  |||||   ||||||||| |||||||||||||||||   |    
T  42784369 tgatgttcagattcggtggaaattactccggtggtcattcagaaaggcatcactaggaattgagttctttcgtcatatctgtgagttgatgacgatcatt 42784468  T
Q  156 atcacttattttaattatcgttattattgatattt 190  Q
    |||||||||||||||||||| ||||||||||||||    
T  42784469 atcacttattttaattatcgctattattgatattt 42784503  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 5520679 - 5520607
Alignment:
Q  121 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    |||||| || |||||  |||||||||||||||||   ||||||||||||||||||| | ||||||||||||||    
T  5520679 agttgattcatcataactgtgagttgatgacgatcattatcacttattttaattatagctattattgatattt 5520607  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 15597591 - 15597645
Alignment:
Q  139 gtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    ||||||||||||||||   ||||||||||||| |||||| |||||||| ||||||    
T  15597591 gtgagttgatgacgatcattatcacttattttcattatctttattattaatattt 15597645  T

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Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 107 - 190
Target Start/End: Complemental strand, 36265661 - 36265575
Alignment:
Q  107 attgctaggaacggagttgactcgtcatatttgtgagttgatgacg---attatcacttattttaattatcgttattattgatattt 190  Q
    ||||||||||| ||||||||||||||||| |||||||||||||| |   |||||||||||||||  |||||||||||||||||||||    
T  36265661 attgctaggaatggagttgactcgtcatagttgtgagttgatgaggatcattatcacttattttccttatcgttattattgatattt 36265575  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 139 - 190
Target Start/End: Original strand, 28802534 - 28802588
Alignment:
Q  139 gtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    ||||||||||||||||   |||||| |||||| ||||||||||||||||||||||    
T  28802534 gtgagttgatgacgatcattatcacatattttcattatcgttattattgatattt 28802588  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 187
Target Start/End: Complemental strand, 19670555 - 19670504
Alignment:
Q  139 gtgagttgatgacgat---tatcacttattttaattatcgttattattgata 187  Q
    ||||||||||||||||   |||||| |||||||||||| |||||||||||||    
T  19670555 gtgagttgatgacgatcaatatcacatattttaattattgttattattgata 19670504  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 30943317 - 30943404
Alignment:
Q  106 cattgctaggaacggagttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    ||||| |||||| ||| ||||||| ||||| || ||||||||| || ||   |||||  |||||||||||| ||||||||||||||||    
T  30943317 cattgttaggaatggatttgactcttcataattatgagttgataacaatcattatcatatattttaattattgttattattgatattt 30943404  T

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Target: chr3 (Bit Score: 52; Significance: 5e-21; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 5706775 - 5706724
Alignment:
Q  139 gtgagttgatgacgattatcacttattttaattatcgttattattgatattt 190  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5706775 gtgagttgatgacgattatcacttattttaattatcgttattattgatattt 5706724  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 28059545 - 28059473
Alignment:
Q  121 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    |||||| ||||| |||  ||||||||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  28059545 agttgattcgtcgtatcggtgagttgatgacgatcattatcacttattttaattatcgctattattgatattt 28059473  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Complemental strand, 28069970 - 28069898
Alignment:
Q  121 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    |||||| ||||| |||  ||||||||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  28069970 agttgattcgtcgtatcggtgagttgatgacgatcattatcacttattttaattatcgctattattgatattt 28069898  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 29755178 - 29755041
Alignment:
Q  55 tgtatgatgttcagattcggtgaggattgctctggtggttataatgaaaggcattgctaggaacggagttgactcgtcatat--ttgtgagttgatgacg 152  Q
    |||||||||||||||||||||||  |||||||| ||| |||| | | ||| ||||| || ||||  |||||| |||||||||  |||||||||||| |||    
T  29755178 tgtatgatgttcagattcggtgaaaattgctctagtgattattacggaagacattgttaagaacatagttgattcgtcatatagttgtgagttgatcacg 29755079  T
Q  153 ---attatcacttattttaattatcgttattattgata 187  Q
       |||||||  |||||| |||||  ||||||||||||    
T  29755078 atcattatcatatattttgattatttttattattgata 29755041  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 22012893 - 22012965
Alignment:
Q  121 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    |||||| ||||| ||  |||||||||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  22012893 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatattt 22012965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 103 - 190
Target Start/End: Original strand, 27649978 - 27650061
Alignment:
Q  103 aggcattgctaggaacggagttgactcgtcatatttgtgagttgatgacgattatcacttattttaattatcgttattattgatattt 190  Q
    ||||||||||||||| | | |||| | | |||| ||||||||||||||||||     |||||||||||||||||||||||||||||||    
T  27649978 aggcattgctaggaatgaaattgattagccatagttgtgagttgatgacgatc----cttattttaattatcgttattattgatattt 27650061  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 138 - 190
Target Start/End: Original strand, 27526189 - 27526244
Alignment:
Q  138 tgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    |||||||||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  27526189 tgtgagttgatgacgatcattatcacttattttaattatcgctattattgatattt 27526244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 190
Target Start/End: Complemental strand, 13143058 - 13143004
Alignment:
Q  139 gtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    ||||||||||||||||   |||| |||||||| | ||||||||||||||||||||    
T  13143058 gtgagttgatgacgatcattatcgcttattttcaatatcgttattattgatattt 13143004  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 2587156 - 2587228
Alignment:
Q  121 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    |||||| ||||||||  |||||||||||||||||   ||||||||||||||||||||  ||||||||||||||    
T  2587156 agttgattcgtcataactgtgagttgatgacgatcattatcacttattttaattatctctattattgatattt 2587228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 44314820 - 44314892
Alignment:
Q  121 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    |||||| ||||| ||  |||||||||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  44314820 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatattt 44314892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 44322999 - 44323071
Alignment:
Q  121 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    |||||| ||||| ||  |||||||||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  44322999 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatattt 44323071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 14649210 - 14649282
Alignment:
Q  121 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    |||||| ||||| ||  |||||||||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  14649210 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatattt 14649282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 121 - 190
Target Start/End: Original strand, 14659000 - 14659072
Alignment:
Q  121 agttgactcgtcatatttgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    |||||| ||||| ||  |||||||||||||||||   ||||||||||||||||||||| ||||||||||||||    
T  14659000 agttgattcgtcgtaactgtgagttgatgacgatcattatcacttattttaattatcgctattattgatattt 14659072  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 190
Target Start/End: Original strand, 42565065 - 42565117
Alignment:
Q  141 gagttgatgacgatta---tcacttattttaattatcgttattattgatattt 190  Q
    ||||||||||||||||   ||||||||||||||||||| |||||||| |||||    
T  42565065 gagttgatgacgattattatcacttattttaattatcgctattattggtattt 42565117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 190
Target Start/End: Original strand, 18981378 - 18981415
Alignment:
Q  153 attatcacttattttaattatcgttattattgatattt 190  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  18981378 attatcacttattttaattatcgctattattgatattt 18981415  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 26918507 - 26918452
Alignment:
Q  138 tgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    |||||||||||||||||   ||||| |||||||||||||| |||||||||||||||    
T  26918507 tgtgagttgatgacgatcattatcaattattttaattatcattattattgatattt 26918452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 138 - 190
Target Start/End: Complemental strand, 54353047 - 54352992
Alignment:
Q  138 tgtgagttgatgacgat---tatcacttattttaattatcgttattattgatattt 190  Q
    |||||||||||||||||   ||||||||||||||||||| | ||||||||||||||    
T  54353047 tgtgagttgatgacgatcattatcacttattttaattatagctattattgatattt 54352992  T

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