View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9596_low_4 (Length: 349)
Name: NF9596_low_4
Description: NF9596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9596_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 52383402 - 52383183
Alignment:
| Q |
1 |
acaaagtggagaattgaagcgactcggtgattacatcagaggagaatactattaggcttgcaaaaggattcaaccatatgtacagatttgatgatatgaa |
100 |
Q |
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| T |
52383402 |
acaaagtggagaattgaagcgactcggtgattacatcagaggagaatactattaggcttgcaaaaggattcaaccatatgtacagatttgatgatatgaa |
52383303 |
T |
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| Q |
101 |
aatagaatatgccattggatactaatttatattgatttcactaagaaagagaccgaaatcactaagaattacagccatacacgagcatatttctaa---- |
196 |
Q |
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| T |
52383302 |
aatagaatatgccattgtatactaatttatattgatttcactaagaacgagaccgaaatcactaagaattacaaccatacacgagcatatttctaaatgt |
52383203 |
T |
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| Q |
197 |
aaaatccgtaattgataaaa |
216 |
Q |
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||| |||||||||||||||| |
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| T |
52383202 |
aaattccgtaattgataaaa |
52383183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 208 - 330
Target Start/End: Complemental strand, 52381181 - 52381059
Alignment:
| Q |
208 |
ttgataaaaactcagttatttgaggaaaagcaatgttatacattctcatacattttacatcaaataaccacctacaccccaatctctcaccatcactatg |
307 |
Q |
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|||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52381181 |
ttgataaaaactcacttatttaaggaaaagcaatgttatacattctaatacattttacatcaaataaccacctacaccccaatctctcaccatcactatg |
52381082 |
T |
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| Q |
308 |
aatcttgaatgcaattcataaca |
330 |
Q |
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| T |
52381081 |
aatcttgaatgcaattcataaca |
52381059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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