View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9596_low_6 (Length: 338)

Name: NF9596_low_6
Description: NF9596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9596_low_6
NF9596_low_6
[»] chr8 (4 HSPs)
chr8 (22-331)||(5791941-5792250)
chr8 (69-280)||(10394462-10394678)
chr8 (206-331)||(898902-899027)
chr8 (69-121)||(34752724-34752776)
[»] chr3 (2 HSPs)
chr3 (178-331)||(21430801-21430954)
chr3 (219-267)||(31574698-31574746)
[»] chr5 (2 HSPs)
chr5 (69-121)||(13020955-13021007)
chr5 (69-121)||(13092479-13092531)
[»] chr7 (5 HSPs)
chr7 (112-158)||(27949633-27949679)
chr7 (69-146)||(30305367-30305444)
chr7 (69-121)||(513846-513898)
chr7 (69-129)||(31802451-31802511)
chr7 (69-121)||(41605362-41605414)
[»] chr6 (1 HSPs)
chr6 (68-148)||(33099435-33099515)
[»] chr1 (1 HSPs)
chr1 (69-121)||(39501119-39501171)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 22 - 331
Target Start/End: Complemental strand, 5792250 - 5791941
Alignment:
Q  22 agttggtacattatgaaaaatatggggcttagccgagacaaagatgctactataagcaatcttatttgctttcctccaaacataggacactacaaagtcg 121  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||||  |||| |||||| ||||||||||||| |    
T  5792250 agttggtacattatgaaaaatatggggcttaaccgagacaaagatgctagtataagcaaccttatttgcttggctccgaacatacgacactacaaagttg 5792151  T
Q  122 tttctatttaataagagacttctacatcaagatacaaaatcagcaaactcattaataggagagttgttggtggcaagcatgtccgataaaatcttgaaat 221  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  5792150 tttctatttaataagagacttctacattaagatacaaaatcagcaaactcattaataggagagttgttggtggcaagcatgtcggataaaatcttggaat 5792051  T
Q  222 ctatttcaaatagcacaaaatgcattccattcgaaattgccactttgagagcttccaatgagcttagagttccagctttcataatggtgacatagaaacg 321  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5792050 ctgtttcaaatagcacaaaatgcattccattcgaaattgccactttgagagcttccaatgagcttagagttccagctttcataatggtgacatagaaacg 5791951  T
Q  322 agaataatct 331  Q
    ||||||||||    
T  5791950 agaataatct 5791941  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 69 - 280
Target Start/End: Complemental strand, 10394678 - 10394462
Alignment:
Q  69 tactataagcaatcttatttgctttcctccaaacataggacactacaaagtcgtttctatttaataagagacttctacatcaagatacaaaatcagcaaa 168  Q
    |||||| || || |||||||| || |||||||| ||| |||| || |||||| ||||||||||||||||||||||||| |  | |||||| ||||  |||    
T  10394678 tactatgagtaaccttatttgtttgcctccaaaaataagacattataaagtcatttctatttaataagagacttctacgttgaaatacaagatcacgaaa 10394579  T
Q  169 ctcattaataggagagt------tgttggtggcaagcatg-tccgataaaatcttgaaatctatttcaaatagcacaaaatgcattccattcgaaattgc 261  Q
    | |||| ||||||||||      ||||| | || |  ||| ||| ||||||||||| ||||  |||||||||| ||| |||||||||||||| |||||||    
T  10394578 cacattcataggagagtcagagttgttgatagcca--atggtcctataaaatcttggaatccgtttcaaatagaacataatgcattccattcaaaattgc 10394481  T
Q  262 cactttgagagcttccaat 280  Q
    |||||||| ||||||||||    
T  10394480 cactttgaaagcttccaat 10394462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 206 - 331
Target Start/End: Original strand, 898902 - 899027
Alignment:
Q  206 gataaaatcttgaaatctatttcaaatagcacaaaatgcattccattcgaaattgccactttgagagcttccaatgagcttagagttccagctttcataa 305  Q
    ||||||||||||||||| |||||||| || |||| |||||||||||| |||||   |||||| |||||||||| | ||| ||||||||||||||| | ||    
T  898902 gataaaatcttgaaatcaatttcaaacagaacaatatgcattccatttgaaatgatcactttcagagcttccagtaagcctagagttccagcttttagaa 899001  T
Q  306 tggtgacatagaaacgagaataatct 331  Q
    || ||| | || || |||||||||||    
T  899002 tgatgaaagaggaaggagaataatct 899027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 34752724 - 34752776
Alignment:
Q  69 tactataagcaatcttatttgctttcctccaaacataggacactacaaagtcg 121  Q
    |||||| ||||||  ||||||||| ||||| |||||| |||||||||||||||    
T  34752724 tactatgagcaattctatttgcttgcctcctaacatacgacactacaaagtcg 34752776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 178 - 331
Target Start/End: Original strand, 21430801 - 21430954
Alignment:
Q  178 aggagagttgttggtggcaagcatgtccgataaaatcttgaaatctatttcaaatagcacaaaatgcattccattcgaaattgccactttgagagcttcc 277  Q
    |||||||||||||||||  ||  |||| |||||||||||| ||||| ||||||| |   || |||||||||||||||||||||||||||||| |||||||    
T  21430801 aggagagttgttggtggtgagtgtgtcagataaaatcttggaatctgtttcaaacaaaccagaatgcattccattcgaaattgccactttgatagcttcc 21430900  T
Q  278 aatgagcttagagttccagctttcataatggtgacatagaaacgagaataatct 331  Q
    ||| ||||| ||||| |||||| |||||||||| || || || |||||||||||    
T  21430901 aataagcttggagtttcagcttccataatggtggcagaggaaggagaataatct 21430954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 267
Target Start/End: Complemental strand, 31574746 - 31574698
Alignment:
Q  219 aatctatttcaaatagcacaaaatgcattccattcgaaattgccacttt 267  Q
    |||||||||||||||| |||| |||||| ||||| ||||| ||||||||    
T  31574746 aatctatttcaaatagtacaacatgcatcccatttgaaatagccacttt 31574698  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 13020955 - 13021007
Alignment:
Q  69 tactataagcaatcttatttgctttcctccaaacataggacactacaaagtcg 121  Q
    |||||||||||| ||||||||||| ||||| |||||| |||||||||||||||    
T  13020955 tactataagcaaccttatttgcttgcctccgaacatacgacactacaaagtcg 13021007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 121
Target Start/End: Original strand, 13092479 - 13092531
Alignment:
Q  69 tactataagcaatcttatttgctttcctccaaacataggacactacaaagtcg 121  Q
    |||||||||||| ||||||||||| ||||| |||||| |||||||||||||||    
T  13092479 tactataagcaaccttatttgcttgcctccgaacatacgacactacaaagtcg 13092531  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 158
Target Start/End: Original strand, 27949633 - 27949679
Alignment:
Q  112 tacaaagtcgtttctatttaataagagacttctacatcaagatacaa 158  Q
    |||||||||||||||||| | ||||| |||||||||| |||||||||    
T  27949633 tacaaagtcgtttctattaagtaagaaacttctacattaagatacaa 27949679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 146
Target Start/End: Original strand, 30305367 - 30305444
Alignment:
Q  69 tactataagcaatcttatttgctttcctccaaacataggacactacaaagtcgtttctatttaataagagacttctac 146  Q
    |||||| ||||||  |||||| || |||||||||||| ||| |||||||||||   ||||| | ||||||||||||||    
T  30305367 tactatgagcaattctatttgtttgcctccaaacatacgactctacaaagtcgaaactattgagtaagagacttctac 30305444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 513898 - 513846
Alignment:
Q  69 tactataagcaatcttatttgctttcctccaaacataggacactacaaagtcg 121  Q
    |||||| ||||| | |||| |||| |||||||||||| |||||||||||||||    
T  513898 tactatgagcaaccctattagcttgcctccaaacatacgacactacaaagtcg 513846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 129
Target Start/End: Complemental strand, 31802511 - 31802451
Alignment:
Q  69 tactataagcaatcttatttgctttcctccaaacataggacactacaaagtcgtttctatt 129  Q
    |||||| ||||| |||||| |||| ||||| |||||| |||||||||||| || |||||||    
T  31802511 tactatgagcaaccttattagcttgcctccgaacatacgacactacaaagccggttctatt 31802451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 41605414 - 41605362
Alignment:
Q  69 tactataagcaatcttatttgctttcctccaaacataggacactacaaagtcg 121  Q
    |||||| ||||| ||||||||| | |||| ||||||| |||||||||||||||    
T  41605414 tactatgagcaaccttatttgcctacctctaaacatacgacactacaaagtcg 41605362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 33099515 - 33099435
Alignment:
Q  68 ctactataagcaatcttatttgctttcctccaaacataggacactacaaagtcgtttctatttaataagagacttctacat 148  Q
    ||||||| ||||||| || ||| ||  |||||||||||  |||||| ||||||  ||||||| |||||||||| |||||||    
T  33099515 ctactatgagcaatcatacttgtttctctccaaacatacaacactaaaaagtcaattctattaaataagagacatctacat 33099435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 121
Target Start/End: Complemental strand, 39501171 - 39501119
Alignment:
Q  69 tactataagcaatcttatttgctttcctccaaacataggacactacaaagtcg 121  Q
    ||||||||||||   ||||||||| ||||| |||||| |||||||||||||||    
T  39501171 tactataagcaactctatttgcttgcctcctaacatacgacactacaaagtcg 39501119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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