View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9596_low_7 (Length: 330)
Name: NF9596_low_7
Description: NF9596
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9596_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 19 - 322
Target Start/End: Original strand, 35205406 - 35205709
Alignment:
| Q |
19 |
accatcggtaagatttgcataaagcaaaggcataatccccgaagcatgcttcgccaaaacactaacaacctctccaccaacattaacacatagtgaaacc |
118 |
Q |
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| T |
35205406 |
accatcggtaagatttgcataaagcaaaggcataatccccgaagcatgcttcgccaaaacactaacaacctctccaccaacattaacacatagtgaaacc |
35205505 |
T |
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| Q |
119 |
aaaatggaaacacagtactccttctccgcactcgaatttgcagattgcaaaatcccaataaccaatgacaaacccgagcattctaatacagcacgagcac |
218 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35205506 |
aaaatggaaacacagtactccttctccgcacgcgaatttgcagattgcaaaatcccaataaccaatgacaaacccgagcattctaatacagcacgagcac |
35205605 |
T |
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| Q |
219 |
catccacattctccgccaatgctaccaaaaccgctaaacaatcattaacaacataacctttatccgaagaacctaaaactttaacaatagccggaacaac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35205606 |
catccacattctccgccaatgctaccaaaaccgctaaacaatcattaacaacataacctttatccgaagaacctaaaactttaacaatagccggaacaac |
35205705 |
T |
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| Q |
319 |
acca |
322 |
Q |
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|||| |
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| T |
35205706 |
acca |
35205709 |
T |
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