View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9597_1 (Length: 845)
Name: NF9597_1
Description: NF9597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9597_1 |
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Alignment Details
Target: chr5 (Bit Score: 231; Significance: 1e-127; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 162 - 484
Target Start/End: Complemental strand, 16209219 - 16208894
Alignment:
| Q |
162 |
actactactattactagtattagtatccatatgcaacactttttctcttgttatattatttttat--gtcatataggactatataggatgaagcaagatg |
259 |
Q |
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| T |
16209219 |
actactactagtattgctattagtatccatatgcaatgctttttctcttgttatattatatttatatgtcatataggactatataggatgaagcaagatg |
16209120 |
T |
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| Q |
260 |
tctcaccctatactataagacatatagaagaagatnnnnnnnnggctataataattgcataatgattgaagtgcaagaaaacaagagag-aaaatagagg |
358 |
Q |
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| T |
16209119 |
tctcaccctatactataagacatatagaagaagataaaaaaaaggctataataattgcataatgattgaagtgcaagaaaacaagagagaaaaatagagg |
16209020 |
T |
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| Q |
359 |
gagagaaggaagagtagtataactataaggtagctatgagttgaannnnnnnnactacgaaggattaaggggtgtggttggttttctttataggttggag |
458 |
Q |
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| T |
16209019 |
gagagaaggaagagtagtataactataaggtagctatgagttgaattttttttactacgaaggattaaggggtgtggttggttttctttataggttggag |
16208920 |
T |
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| Q |
459 |
ggattatgctatactttctcgaacta |
484 |
Q |
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| T |
16208919 |
ggattatgctatactttctcgaacta |
16208894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 516 - 809
Target Start/End: Complemental strand, 16208862 - 16208573
Alignment:
| Q |
516 |
tttttgagcgtgacatggaggcaacactttgctttatacggagcaatataggacactattcttttgctttgatttgtgtattttcatgcaatgcaactac |
615 |
Q |
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| T |
16208862 |
tttttgagcgtgacatggaggcaacactttgctttatacggagcaatataggacactattcttttgctttgatttgtgtattttcatgcaatgcaactac |
16208763 |
T |
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| Q |
616 |
ggtgtggcaaaagaactccttatcctttacgtacaattttgttaaaggaagattttatgtttccttgcatgttgtgtcatannnnnnnnnnnnnatgctt |
715 |
Q |
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| T |
16208762 |
ggtgtgccaaaagaactccttatcctttacgtacaattttgttaaaggaagattttgtgtttccttgcatgttgtgtc----tctctctctctcatgctt |
16208667 |
T |
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| Q |
716 |
gtggaatcaaataggggaagggaaaaaggatagaatcaaactaatttactacattatttacatgatttatgaataaatcagtcgcaatatcaat |
809 |
Q |
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| T |
16208666 |
gtggaatcaaataggggaagggaaaaaggatagaatcaaactaatttactacattatttacatgatttatgaataaatcagtcgcaacatcaat |
16208573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 2e-36
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 16209367 - 16209289
Alignment:
| Q |
17 |
catcatcatgtttgagtgtttcctctgaccaatgtcttgtagttgtttgtcctgttcctccaccactaactaagctact |
95 |
Q |
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| T |
16209367 |
catcatcatgtttgagtgtttcctctgaccaatgtcttgtagttgtttgtcctgttcctccaccactaactaagctact |
16209289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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