View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9597_5 (Length: 408)

Name: NF9597_5
Description: NF9597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9597_5
NF9597_5
[»] chr8 (6 HSPs)
chr8 (73-197)||(1357282-1357406)
chr8 (230-324)||(1352319-1352413)
chr8 (230-324)||(2041244-2041338)
chr8 (323-408)||(1358105-1358190)
chr8 (234-324)||(1357444-1357534)
chr8 (288-324)||(1364328-1364364)
[»] chr5 (1 HSPs)
chr5 (230-324)||(36717352-36717446)
[»] chr3 (1 HSPs)
chr3 (240-324)||(24620546-24620630)


Alignment Details
Target: chr8 (Bit Score: 125; Significance: 3e-64; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 73 - 197
Target Start/End: Original strand, 1357282 - 1357406
Alignment:
Q  73 cttcaatccatattattttcatgccttcccataattcatcctttctccttttatatccatttctgttagcaatttatccttaattattggatcaagtgac 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1357282 cttcaatccatattattttcatgccttcccataattcatcctttctccttttatatccatttctgttagcaatttatccttaattattggatcaagtgac 1357381  T
Q  173 acgtgtctctttacactaactagat 197  Q
    |||||||||||||||||||||||||    
T  1357382 acgtgtctctttacactaactagat 1357406  T

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Target: chr8; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 230 - 324
Target Start/End: Original strand, 1352319 - 1352413
Alignment:
Q  230 gaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1352319 gaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 1352413  T

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Target: chr8; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 230 - 324
Target Start/End: Complemental strand, 2041338 - 2041244
Alignment:
Q  230 gaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  2041338 gaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaaggtattgataatgtaaaataccttggagatgtta 2041244  T

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Target: chr8; HSP #4
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 323 - 408
Target Start/End: Original strand, 1358105 - 1358190
Alignment:
Q  323 tatattgttaacatggtatcatagcttggttcaatcctccggctttacatacaatcttcatagtgcttctcagcaaaagcacgccc 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1358105 tatattgttaacatggtatcatagcttggttcaatcctccggctttacatacaatcttcatagtgcttctcagcaaaagcacgccc 1358190  T

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Target: chr8; HSP #5
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 1357444 - 1357534
Alignment:
Q  234 cctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 324  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1357444 cctgttatgatgaagagaaaggatcaaacatgtttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 1357534  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 288 - 324
Target Start/End: Original strand, 1364328 - 1364364
Alignment:
Q  288 aaagctattgataatgtaaaataccttggagatgtta 324  Q
    |||||||||||||||||||||||||||||||||||||    
T  1364328 aaagctattgataatgtaaaataccttggagatgtta 1364364  T

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Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 230 - 324
Target Start/End: Original strand, 36717352 - 36717446
Alignment:
Q  230 gaatcctgttatgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 324  Q
    |||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36717352 gaatcctgttatgatgaagagaaaggatcaaacatctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 36717446  T

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Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 240 - 324
Target Start/End: Complemental strand, 24620630 - 24620546
Alignment:
Q  240 atgatgaaaagaaaggatcaaacacctttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 324  Q
    |||||||| |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24620630 atgatgaagagaaaggatcaaacatatttggttgatctttgtgttgagaaagctattgataatgtaaaataccttggagatgtta 24620546  T

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