View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9597_6 (Length: 356)
Name: NF9597_6
Description: NF9597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9597_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 1e-93; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 115 - 337
Target Start/End: Original strand, 52383183 - 52383407
Alignment:
| Q |
115 |
ttttatcaattacggatttt----ttagaaatatgctcgtgtatggctgtaattcttagtgatttcggtctctttcttagtgaaatcaatataaattagt |
210 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52383183 |
ttttatcaattacggaatttacatttagaaatatgctcgtgtatggttgtaattcttagtgatttcggtctcgttcttagtgaaatcaatataaattagt |
52383282 |
T |
|
| Q |
211 |
atccaatggcatattctattttcatatcactcgacatctgtacatatggttgaatccttttgcaagcctaatagtattctcctctgatgtaatcaccgag |
310 |
Q |
| |
|
|| |||||||||||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52383283 |
atacaatggcatattctattttcatatca-tc-aaatctgtacatatggttgaatccttttgcaagcctaatagtattctcctctgatgtaatcaccgag |
52383380 |
T |
|
| Q |
311 |
tcgcttcaattctccactttgttgctc |
337 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
52383381 |
tcgcttcaattctccactttgttgctc |
52383407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 52381059 - 52381181
Alignment:
| Q |
1 |
tgttatgaattgcattcaagattcatagtgatggtgagagattggggtgtaggtggttatttgatgtaaaatgtatgagaatgtataacattgcttttcc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52381059 |
tgttatgaattgcattcaagattcatagtgatggtgagagattggggtgtaggtggttatttgatgtaaaatgtattagaatgtataacattgcttttcc |
52381158 |
T |
|
| Q |
101 |
tcaaataactgagtttttatcaa |
123 |
Q |
| |
|
| |||||| |||||||||||||| |
|
|
| T |
52381159 |
ttaaataagtgagtttttatcaa |
52381181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University