View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9597_low_1 (Length: 283)
Name: NF9597_low_1
Description: NF9597
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9597_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 32077169 - 32077423
Alignment:
| Q |
19 |
agatgaagcttagccattcttcagtgactacaaaggaaacatgaatgttgatattgttggagacaaggagtttgcagaggttcatcatagggttgatatt |
118 |
Q |
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| T |
32077169 |
agatgaagcttagccattcttcagtgactacaaaggaaacatgaatgttgctattgttggagacaaggagtttgcagaggttcatcatagggttgatatt |
32077268 |
T |
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| Q |
119 |
gcctcgtacaggaaatggcatggccaccatgtggcagagggaagttggtagggcttccatagcaattttgggaaagaataagaatatcaagattcaaagt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32077269 |
gcctcgtacaggaaatggcatggccaccatgtggcagagggaagttggtagggcttccatagcaattttgggaaagaataagaatatcaagattcaaagt |
32077368 |
T |
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| Q |
219 |
ttcaatcttcatctttgtctatcttctctcaaagataagaacggtcccatctctg |
273 |
Q |
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| T |
32077369 |
ttcaatcttcatctttgtctatcttctctcaaagataagaacggtcccatctctg |
32077423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 31004535 - 31004363
Alignment:
| Q |
19 |
agatgaagcttagccattcttcagtgactacaaaggaaacatgaatgttgatattgttggagacaaggagtttgcagaggttcatcatagggttgatatt |
118 |
Q |
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| T |
31004535 |
agatgaaggttaaccattcttcggtgacaataaatgtaacaaggatgttgttgttcttggagataaggagcttgcataggttcatcattgggttgatgtg |
31004436 |
T |
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| Q |
119 |
gcctcgtacaggaaatggcatggccaccatgtggcagagggaagttggtagggcttccatagcaattttggga |
191 |
Q |
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| T |
31004435 |
gcctcttgcaggggaaggcatggctagtatgtggttgaagaaagttggtggtgattccattgcaattttggga |
31004363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 124
Target Start/End: Complemental strand, 31009547 - 31009453
Alignment:
| Q |
30 |
agccattcttcagtgactacaaaggaaacatgaatgttgatattgttggagacaaggagtttgcagaggttcatcatagggttgatattgcctcg |
124 |
Q |
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||||||||||| ||||| ||||||| |||| |||||| |||||||||| ||||||||||| ||||||||||| |||||||| | |||||| |
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| T |
31009547 |
agccattcttctgtgacaacaaaggtaacaacgatgttggggttgttggagatgaggagtttgcataggttcatcattgggttgatgtggcctcg |
31009453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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