View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9598_high_3 (Length: 261)
Name: NF9598_high_3
Description: NF9598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9598_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 4847124 - 4847368
Alignment:
| Q |
1 |
agaataatttcgaaatccaatgactacatcaacgaagaacttgttagaaacactaggaaacttagagaaggattcattcataccccttctcacgaaccta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4847124 |
agaataatttcgaaatccaatgactacaccaacgaagaacttgttagaaacactaggaaacttagagaaggattcattcataccccttctcacgaaccta |
4847223 |
T |
|
| Q |
101 |
atcggtgaatcaagacacgtgcagaacaacccaccggaactgattcctgaagaagacagagtagtcaagcacgtgttaaactcgctattaccgctcagca |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4847224 |
atcggtgaatcgagacacgtgcagaacaacccaccggaactgattcctgaagaagacagagtagtcaagcacgtgttaaactcgctattaccgctcagca |
4847323 |
T |
|
| Q |
201 |
ccaccaccggcggtggtccgttaatcatcaaccatgttacctatt |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4847324 |
ccaccaccggcggtggtccgttaatcatcaaccatgttacctatt |
4847368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University