View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9598_low_1 (Length: 451)

Name: NF9598_low_1
Description: NF9598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9598_low_1
NF9598_low_1
[»] chr3 (4 HSPs)
chr3 (10-432)||(3133272-3133690)
chr3 (105-180)||(3122276-3122351)
chr3 (217-285)||(21754245-21754313)
chr3 (211-259)||(25252041-25252089)
[»] chr8 (2 HSPs)
chr8 (208-309)||(12138169-12138270)
chr8 (211-273)||(1310131-1310193)
[»] chr7 (1 HSPs)
chr7 (211-310)||(5336505-5336604)
[»] chr5 (2 HSPs)
chr5 (212-255)||(40919293-40919336)
chr5 (211-248)||(18839169-18839206)
[»] chr6 (1 HSPs)
chr6 (208-256)||(770340-770388)


Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 10 - 432
Target Start/End: Original strand, 3133272 - 3133690
Alignment:
Q  10 gaagcaaaggtaataaagaaggtttggaatccataaactttctcctatagttttaagctatcaaaagttactaggctgtaaaatgagatcaatcgaagaa 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3133272 gaagcataggtaataaagaaggtttggaatccataaactttctcctaaagttttaagctatcaaaagttactaggctgtaaaatgagatcaatcgaagaa 3133371  T
Q  110 gtataactccagcttgacatcgtagttctaaattgtgagatttaatgcttaacaacgggctagggtacaaatagtggtgctatagcgttgtggcctatgg 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  3133372 gtataactccagcttgacatcgtagttctaaattgtgagatttaatgcttaacagcgggctagggtacaaatagtggtgctatagcgttgtggcctgtgg 3133471  T
Q  210 gatttgaacaaatagctattgttacgtgatacactatttcgtacaaaatggtgtgaaacagcgggactatagcactgtagcatggtagaatttgaacaaa 309  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||    ||    
T  3133472 gatttgaacaaatagctattgttacgtgatacactatttagtacaaaatgatgtgaaacagcgggactatagcactgtagcatggtagaatttg----aa 3133567  T
Q  310 cagtggcttttcgcgatctgcgatggacaaaacttacagaaccttcacataaagatttaggttcccaaaagataccaaaattggaccagtataactcatt 409  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3133568 cagtggcttttcgcgatctgcgatggacaaaatttacagaaccttcacataaagatttaggttcccaaaagataccaaaattggaccagtataactcatt 3133667  T
Q  410 ttagacttaagggctgttgcaga 432  Q
    ||||||||||||| |||||||||    
T  3133668 ttagacttaagggttgttgcaga 3133690  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 3122351 - 3122276
Alignment:
Q  105 aagaagtataactccagcttgacatcgtagttctaaattgtgagatttaatgcttaacaacgggctagggtacaaa 180  Q
    |||||| |||||||||||| |||||| |||| |  || |||||| ||||||||||||||| ||||||  |||||||    
T  3122351 aagaagcataactccagctggacatcatagtgcataagtgtgagttttaatgcttaacaaggggctaatgtacaaa 3122276  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 285
Target Start/End: Original strand, 21754245 - 21754313
Alignment:
Q  217 acaaatagctattgttacgtgatacactatttcgtacaaaatggtgtgaaacagcgggactatagcact 285  Q
    |||||| ||||||||| || |||||||||||| ||||||| || ||| ||| |||||  ||||||||||    
T  21754245 acaaatcgctattgttccgcgatacactatttagtacaaattgttgtcaaatagcggcgctatagcact 21754313  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 211 - 259
Target Start/End: Original strand, 25252041 - 25252089
Alignment:
Q  211 atttgaacaaatagctattgttacgtgatacactatttcgtacaaaatg 259  Q
    |||||||||||| ||| ||||| |||||||| |||||| ||||||||||    
T  25252041 atttgaacaaatcgctcttgtttcgtgatacgctatttagtacaaaatg 25252089  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 208 - 309
Target Start/End: Original strand, 12138169 - 12138270
Alignment:
Q  208 gggatttgaacaaatagctattgttacgtgatacactatttcgtacaaaatggtgtgaaacagcgggactatagcactgtagcatggtagaatttgaaca 307  Q
    ||||| ||||||||| ||||||||  | | ||||| ||||| |||||||||||||| ||| ||||| |||||||||| || |||| || |||||||||||    
T  12138169 gggatctgaacaaattgctattgtcccataatacaatatttagtacaaaatggtgtaaaaaagcggcactatagcacagttgcattgtggaatttgaaca 12138268  T
Q  308 aa 309  Q
    ||    
T  12138269 aa 12138270  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 273
Target Start/End: Original strand, 1310131 - 1310193
Alignment:
Q  211 atttgaacaaatagctattgttacgtgatacactatttcgtacaaaatggtgtgaaacagcgg 273  Q
    |||||||||||| ||||||||| | ||||||||||||| |||||| ||  ||||||| |||||    
T  1310131 atttgaacaaattgctattgttccttgatacactatttagtacaatatattgtgaaatagcgg 1310193  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 310
Target Start/End: Original strand, 5336505 - 5336604
Alignment:
Q  211 atttgaacaaatagctattgttacgtgatacactatttcgtacaaaatggtgtgaaacagcgggactatagcactgtagcatggtagaatttgaacaaac 310  Q
    ||||||||||||  |||||||| | ||||||||| ||| | ||||| || ||| ||| ||||   |||||||||| ||| || |||||||||||||||||    
T  5336505 atttgaacaaattcctattgttccatgatacactgtttagcacaaagtgttgttaaatagcgttgctatagcactatagtatagtagaatttgaacaaac 5336604  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 40919293 - 40919336
Alignment:
Q  212 tttgaacaaatagctattgttacgtgatacactatttcgtacaa 255  Q
    |||||||||||  |||||||| ||||||||||||||||||||||    
T  40919293 tttgaacaaatcactattgttccgtgatacactatttcgtacaa 40919336  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 248
Target Start/End: Complemental strand, 18839206 - 18839169
Alignment:
Q  211 atttgaacaaatagctattgttacgtgatacactattt 248  Q
    |||||||||||||||||||||| ||||||||| |||||    
T  18839206 atttgaacaaatagctattgttccgtgatacagtattt 18839169  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 770340 - 770388
Alignment:
Q  208 gggatttgaacaaatagctattgttacgtgatacactatttcgtacaaa 256  Q
    ||||||||||||||| | ||||||| |||||||| |||||| |||||||    
T  770340 gggatttgaacaaatcggtattgttccgtgatacgctatttagtacaaa 770388  T

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