View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9598_low_11 (Length: 250)
Name: NF9598_low_11
Description: NF9598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9598_low_11 |
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| [»] chr2 (3 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 8368589 - 8368353
Alignment:
| Q |
14 |
agaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaa |
113 |
Q |
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| T |
8368589 |
agaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaa |
8368490 |
T |
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| Q |
114 |
tatgaacctgcaaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatg |
213 |
Q |
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| T |
8368489 |
tatgaacctgcaaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatg |
8368390 |
T |
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| Q |
214 |
aaggattagaaagtgaagtaaaagatgtattagaagt |
250 |
Q |
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| T |
8368389 |
aaggattagaaagtgaagtaaaagatgtattagaagt |
8368353 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 8400821 - 8401057
Alignment:
| Q |
14 |
agaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8400821 |
agaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaa |
8400920 |
T |
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| Q |
114 |
tatgaacctgcaaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatg |
213 |
Q |
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| T |
8400921 |
tatgaacctgcaaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatg |
8401020 |
T |
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| Q |
214 |
aaggattagaaagtgaagtaaaagatgtattagaagt |
250 |
Q |
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| T |
8401021 |
aaggattagaaagtgaagtaaaagatgtattagaagt |
8401057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 14 - 250
Target Start/End: Original strand, 8422398 - 8422634
Alignment:
| Q |
14 |
agaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaa |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
8422398 |
agaggaatatataaaggatactattcaagaagttctagctcttgatagagcttatccactacctttgttaggagttatgattgaaaaattccctcaaaaa |
8422497 |
T |
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| Q |
114 |
tatgaacctgcaaattggaggcctacnnnnnnntcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatg |
213 |
Q |
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| T |
8422498 |
tatgaacctgcaaattggaggcctacaaaaaaatcatctagaagaagcaacaatagttttcattcagaaaataatgaaacaaagaaaaatggatggaatg |
8422597 |
T |
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| Q |
214 |
aaggattagaaagtgaagtaaaagatgtattagaagt |
250 |
Q |
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| T |
8422598 |
aaggattagaaagtgaagtaaaagatgtattagaagt |
8422634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 124
Target Start/End: Complemental strand, 55331091 - 55331029
Alignment:
| Q |
62 |
agcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacctgc |
124 |
Q |
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| T |
55331091 |
agcttatccacttcctttattaggtgttatgcttgaaaaatttcctgcaaaatataaacctgc |
55331029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 122
Target Start/End: Complemental strand, 55336526 - 55336466
Alignment:
| Q |
62 |
agcttatccacttcctttgttaggagttatgattgaaaaattccctcaaaaatatgaacct |
122 |
Q |
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| T |
55336526 |
agcttatccacttcctctgttaggagctatgcttgaaaagtttcctgcaaaatatgaacct |
55336466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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