View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9598_low_3 (Length: 313)
Name: NF9598_low_3
Description: NF9598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9598_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 242
Target Start/End: Original strand, 39823043 - 39823266
Alignment:
| Q |
19 |
aaatccacccgcacaaaagattcaattctcctctttacccaaaccctctctctatatcgtaactgtttccatcatgcacaatgtctccgtcgtaactggt |
118 |
Q |
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| T |
39823043 |
aaatccacccgcacaaaagattcaattctcctctttacccaaaccctctctctatatcgtaactgtttccatcacgcacaatgtctccgtcgtaactggt |
39823142 |
T |
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| Q |
119 |
gacactgcaggtacaggcgtgggatgcatacatctcctcttcatctgtgttagtttttcatccatctgttgtagccctggttgcttcatgatcatgaaga |
218 |
Q |
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| T |
39823143 |
gacactgcaggtacaggcgtgggatgcatacatctcctcttcatctgtgttagtttttcatccatctgttgtagccctggttgcttcatgatcatgaaga |
39823242 |
T |
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| Q |
219 |
gtaagtttgtttttcgcctttaat |
242 |
Q |
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| T |
39823243 |
gtaagtttgtttttcgcctttaat |
39823266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 39914858 - 39914947
Alignment:
| Q |
19 |
aaatccacccgcacaaaagattcaattctcctctttacccaaaccctctctctatatcgtaactgtttccatcatgcacaatgtctccgt |
108 |
Q |
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| T |
39914858 |
aaatccacccacacaaaaaattcaattctccttttcacccaaaccctctctccatatcgtaactgtttccatcaggcacaatgtctccgt |
39914947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 110
Target Start/End: Original strand, 39907883 - 39907972
Alignment:
| Q |
19 |
aaatccacccgcacaaaagattcaattctcctctttacccaaaccctctctctatatcgtaactgtttccatcatgcacaatgtctccgtcg |
110 |
Q |
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| T |
39907883 |
aaatccaccagcagaaaagattcaattctcctcttcacccaaaccctctctgtat--cgtaactgtttccatcatgcacaatgtctccgtcg |
39907972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 39917359 - 39917406
Alignment:
| Q |
265 |
catccttttggggactgtggcaccaatatcagctttcctatgctactc |
312 |
Q |
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| T |
39917359 |
catccttttggggactgtggcaccaatatcagctttcctattctactc |
39917406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 265 - 312
Target Start/End: Original strand, 39823385 - 39823432
Alignment:
| Q |
265 |
catccttttggggactgtggcaccaatatcagctttcctatgctactc |
312 |
Q |
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| T |
39823385 |
catccttttggggactgtggcaccgatatcagctttcctattctactc |
39823432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 203
Target Start/End: Original strand, 39914970 - 39915051
Alignment:
| Q |
124 |
tgcaggtacaggc-gtgggatgcatacatctcct-cttcatctgtgttagtttttcatccatctgttgtagccctggttgct |
203 |
Q |
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| T |
39914970 |
tgcaggaacaggccgtgggaaacatacatctccttcgtcatttgtgccagttgttcatccatctgtagtagccctggttgct |
39915051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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