View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9598_low_5 (Length: 281)
Name: NF9598_low_5
Description: NF9598
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9598_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 52850886 - 52850622
Alignment:
| Q |
1 |
ccatgccaattgtatacttctgtgttttgtcttcaaatcaataccccacttcaggtatagttcctctcttcccttcctcgaaaacttcttatgcacttgc |
100 |
Q |
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| T |
52850886 |
ccatgccaattgtatacttctgtgttttgtcttcaaatcaataccccacttcaggtatagttcctctcttcccttcctcgaaaacttcttatgcacttgc |
52850787 |
T |
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| Q |
101 |
ttactgagcattttcctctcacgggttagagacagcaggctgttcagtaattgtggcatgaaaatagtgtgaaaacttgatatatgacataaaaatagca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52850786 |
ttactgagcattttcctctcacgggttagagacagcaggctgttcagtaattgtggcatgaaaatagtgtgaaaacttgatatatgacataaaaatagca |
52850687 |
T |
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| Q |
201 |
tataattgtgactttatgcaagtgtttgatgtaaagtattcaaagtgaaacaccagccatgatgt |
265 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |
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| T |
52850686 |
tataattgtgactttatgcaagtgtttgatgtaaagcattcaaagtgaaacaccagccattatgt |
52850622 |
T |
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