View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9599_low_1 (Length: 439)
Name: NF9599_low_1
Description: NF9599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9599_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 3 - 423
Target Start/End: Original strand, 18780958 - 18781378
Alignment:
| Q |
3 |
ccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataactc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
18780958 |
ccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccataactc |
18781057 |
T |
|
| Q |
103 |
tcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccttaatttgacaattgtggaatgaaat |
202 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
18781058 |
ttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccataatttgacaattgtggaatgaaat |
18781157 |
T |
|
| Q |
203 |
tccagtgttttggaatgggtcacctcgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaatact |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
18781158 |
tccagtgttttggaatgggtcacctcgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaacact |
18781257 |
T |
|
| Q |
303 |
gctgcggcgttgccaaagataaagtctacggtgccatagatgaagcattgcctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccg |
402 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18781258 |
actgcggcgttgccaaagataaagtcgacggtgccatagatgaagcattgtctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccg |
18781357 |
T |
|
| Q |
403 |
atatagcacaccggtagaaga |
423 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
18781358 |
atatagcacaccgatagaaga |
18781378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 325; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 3 - 423
Target Start/End: Complemental strand, 10821258 - 10820838
Alignment:
| Q |
3 |
ccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataactc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||| |
|
|
| T |
10821258 |
ccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctgactaaagtgtccataaaagttttcatcaccataactc |
10821159 |
T |
|
| Q |
103 |
tcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccttaatttgacaattgtggaatgaaat |
202 |
Q |
| |
|
| ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
10821158 |
ttgaatattgttgccaaggtcttcctaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaat |
10821059 |
T |
|
| Q |
203 |
tccagtgttttggaatgggtcacctcgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaatact |
302 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
10821058 |
tccagtgttttggaatggatcacctcgaccttgggcagtgatcatgttagcttggccatctaaaggttttcttgcgaaaatgttgcaattttggaatacc |
10820959 |
T |
|
| Q |
303 |
gctgcggcgttgccaaagataaagtctacggtgccatagatgaagcattgcctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccg |
402 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||||| |||| |
|
|
| T |
10820958 |
actgcagcgttgccaaagatgaagtctacggtgccatagatgaagcattgtctgtaaaattgacgttgtgcatgagccatgagggtgtcttggtaacccg |
10820859 |
T |
|
| Q |
403 |
atatagcacaccggtagaaga |
423 |
Q |
| |
|
|||| | |||||||||||||| |
|
|
| T |
10820858 |
atattgtacaccggtagaaga |
10820838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 3 - 421
Target Start/End: Original strand, 1629440 - 1629858
Alignment:
| Q |
3 |
ccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataactc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||| |
|
|
| T |
1629440 |
ccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccattactc |
1629539 |
T |
|
| Q |
103 |
tcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccttaatttgacaattgtggaatgaaat |
202 |
Q |
| |
|
| ||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1629540 |
ttgaatattgttgccaaggtctgcccaagaaggttttgtacttgtcaacaacaggttttagatctgatgcagccctaatttgacaattgtggaatgaaat |
1629639 |
T |
|
| Q |
203 |
tccagtgttttggaatgggtcacctcgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaatact |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629640 |
tccagtgttttggaatgggtcacctcgaccttgggcagtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaatacc |
1629739 |
T |
|
| Q |
303 |
gctgcggcgttgccaaagataaagtctacggtgccatagatgaagcattgcctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccg |
402 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||| || |||||||| || || | |
|
|
| T |
1629740 |
actgcggcgttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctg |
1629839 |
T |
|
| Q |
403 |
atatagcacaccggtagaa |
421 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
1629840 |
atatggcacaccgatagaa |
1629858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 3 - 423
Target Start/End: Original strand, 1623264 - 1623684
Alignment:
| Q |
3 |
ccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataactc |
102 |
Q |
| |
|
|||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
1623264 |
ccataatacaatgtatcttgagcaaaatctgtgtcaccccatggagaccaacctagggggctcactaaagtgtccataaaagttttcatcaccataactc |
1623363 |
T |
|
| Q |
103 |
tcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccttaatttgacaattgtggaatgaaat |
202 |
Q |
| |
|
| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1623364 |
ttgagaattgttgccaaggccttcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaat |
1623463 |
T |
|
| Q |
203 |
tccagtgttttggaatgggtcacctcgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaatact |
302 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
1623464 |
tccagtgttttggaatgggtcaccacgaccttgggctgtgatcatgttagcttggccatccaaaggctttcttgcgaaaatgttacagttttggaatact |
1623563 |
T |
|
| Q |
303 |
gctgcggcgttgccaaagataaagtctacggtgccatagatgaagcattgcctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccg |
402 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||||||||||||||| | ||| ||||||||||| ||||| ||||| || |||||||| ||||||| |
|
|
| T |
1623564 |
actgcagcgttgccaaagatgaagtctacggtgccatagatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccg |
1623663 |
T |
|
| Q |
403 |
atatagcacaccggtagaaga |
423 |
Q |
| |
|
||||||||||||| ||||||| |
|
|
| T |
1623664 |
atatagcacaccgatagaaga |
1623684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 3 - 421
Target Start/End: Original strand, 1606142 - 1606560
Alignment:
| Q |
3 |
ccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataactc |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606142 |
ccataatacaatgtgtcttgagcaaaatcagtgtcaccccatggagaccaacccagggggcttactaaagtgtccatgaaagttttcatcaccataactc |
1606241 |
T |
|
| Q |
103 |
tcgaatattgttgccaaggcctacccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccttaatttgacaattgtggaatgaaat |
202 |
Q |
| |
|
| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
1606242 |
ttgaatattgttgccaaggcctgcccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccctaatttgacaattgtggaatgaaat |
1606341 |
T |
|
| Q |
203 |
tccagtgttttggaatgggtcacctcgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaatact |
302 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
1606342 |
tccagtgttttggaatgggtcacctcgaccttgggctgtgatcatgttagcttgaccatctaaaggttttcttgcgaaaatgttacaattttggaaaacc |
1606441 |
T |
|
| Q |
303 |
gctgcggcgttgccaaagataaagtctacggtgccatagatgaagcattgcctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccg |
402 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| ||||| ||||| || |||||||| || || | |
|
|
| T |
1606442 |
actgcggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctg |
1606541 |
T |
|
| Q |
403 |
atatagcacaccggtagaa |
421 |
Q |
| |
|
|||| |||||||| ||||| |
|
|
| T |
1606542 |
atatggcacaccgatagaa |
1606560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 282 - 343
Target Start/End: Complemental strand, 2576132 - 2576071
Alignment:
| Q |
282 |
atgttacaattttggaatactgctgcggcgttgccaaagataaagtctacggtgccatagat |
343 |
Q |
| |
|
||||||||||||||||| ||| | || |||||||| || || ||||| |||||||||||||| |
|
|
| T |
2576132 |
atgttacaattttggaaaactacagctgcgttgccgaaaatgaagtcgacggtgccatagat |
2576071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 20 - 400
Target Start/End: Original strand, 12802541 - 12802921
Alignment:
| Q |
20 |
ttgagcaaaatcagtgtcaccccatggagaccaaccaagggggctcactaaagtgtccatgaaagttttcatcaccataactctcgaatattgttgccaa |
119 |
Q |
| |
|
||||||||||| ||| | ||||||||||||||||| | || || || ||| | |||||||| | |||||| |||| |||||| || ||| |||||| |
|
|
| T |
12802541 |
ttgagcaaaattagtacctccccatggagaccaacccattggactgaccaaattatccatgaatgatttcatgaccacaactctagagtatctttgccag |
12802640 |
T |
|
| Q |
120 |
ggcctacccaagaaggttttgtacttgtcaacaacaggctttagatctgatgcagccttaatttgacaattgtggaatgaaattccagtgttttggaatg |
219 |
Q |
| |
|
|||| ||||||||||| ||| | || | ||||| ||||| | ||||| || ||| |||| ||| | ||||| | ||||||||||||||||| |||| |
|
|
| T |
12802641 |
ggccggcccaagaaggtgttgaatttcccgacaacgggcttgaaatctggcgcggccctaatctgagagttgtgaatcgaaattccagtgttttgaaatg |
12802740 |
T |
|
| Q |
220 |
ggtcacctcgaccttgggccgtgatcatgtttgcttggccatctaaaggctttcttgcgaaaatgttacaattttggaatactgctgcggcgttgccaaa |
319 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||| | ||||||| |||| | | ||| | || |||||||| ||| | || ||||||||||| |
|
|
| T |
12802741 |
ggtcatcacgaccttgggccgtgatcatgtttgcttggccgtttaaaggccttctaacaagaatcatgcagttttggaaaactacggctgcgttgccaaa |
12802840 |
T |
|
| Q |
320 |
gataaagtctacggtgccatagatgaagcattgcctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcc |
400 |
Q |
| |
|
||| ||||| ||||||||||||||| | |||| ||||||||||||||||| || || |||| ||||||||||||||||| |
|
|
| T |
12802841 |
gatgaagtcaacggtgccatagatgtaacattctctgtaaaattgacgttgtgcgtgaaccatgagggtgtcttggtagcc |
12802921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 270 - 364
Target Start/End: Complemental strand, 8767130 - 8767036
Alignment:
| Q |
270 |
tttcttgcgaaaatgttacaattttggaatactgctgcggcgttgccaaagataaagtctacggtgccatagatgaagcattgcctgtaaaattg |
364 |
Q |
| |
|
|||||||||||||||||||||||||| || ||| | |||||||| |||||||| || || || |||||||||||| |||| ||||||||||| |
|
|
| T |
8767130 |
tttcttgcgaaaatgttacaattttgcaaaactaccgcggcgttaccaaagatgaaatcaactgtgccatagatgttacattctctgtaaaattg |
8767036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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