View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9599_low_2 (Length: 322)
Name: NF9599_low_2
Description: NF9599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9599_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 5 - 308
Target Start/End: Original strand, 2271770 - 2272073
Alignment:
| Q |
5 |
agtttggtgttaataaatttcatgagtacgtgaaatgaattcaatgctgaaatttaagatgaatattgttcttctacagaggggattttacaccaactaa |
104 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2271770 |
agtttgatgttaataaatttcatgagtacgtgaaatgaattcaatgctgaaatttaagatgaatattgttcttctacagaggggattttacaccaactaa |
2271869 |
T |
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| Q |
105 |
aatgttcataattaaagtagttacaatgttggtgtaatgtggtaagtaatgacttattatctcaagtttagaatcggtgcaaaaataatgtggtatgtaa |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2271870 |
aatgttcataattaaagtagttacaatgttggtgtaatgtggtaagtaatgacttattatctcaagtttagaatcggtgcaaaaataatgtggtatgtaa |
2271969 |
T |
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| Q |
205 |
tgcttttgtatttactggcttcctgcgtttctggtttgattttatgggatgagggctgcttcctggtgttctcggtcgtctatgattttttgcaaactag |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2271970 |
tgcttttgtatttactggcttcctgcgtttctggtttgattttatgggatgagggctgcttcctggtgttctcggtcgtctatgattttttgcaaactag |
2272069 |
T |
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| Q |
305 |
tttt |
308 |
Q |
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|||| |
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| T |
2272070 |
tttt |
2272073 |
T |
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