View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9599_low_4 (Length: 231)
Name: NF9599_low_4
Description: NF9599
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9599_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 213
Target Start/End: Complemental strand, 39133449 - 39133253
Alignment:
| Q |
17 |
agactattaataatgttcacattggtttcagaacttacagaagcagaagtacaaaacacaaatgcaacttaacatgaatgaagtaaaattaccaggtggt |
116 |
Q |
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| T |
39133449 |
agactattaataatgttcacattggtttcagaacttacagaagcagaagtacaaaacacaaatgcaacttaacatgaatgaagtaaaattaccaggtggt |
39133350 |
T |
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| Q |
117 |
cattaccttgcactgctgcaagaaaataataagcgtttccacatcaatcatcatcaatattttcatcatccttcatgtacttctcttgcactgctgc |
213 |
Q |
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| T |
39133349 |
cattaccttgcactgctgcaagaaaataataagcgtttccacatcaatcatcatcaatattttcatcatccttcatgtacttctcttgcactgctgc |
39133253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 66 - 213
Target Start/End: Complemental strand, 26059542 - 26059398
Alignment:
| Q |
66 |
tacaaaacacaaatgcaacttaacatgaa-tgaagtaaaattaccaggtggtcattaccttgcactgctgcaagaaaataataagcgtttccacatcaat |
164 |
Q |
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| T |
26059542 |
tacaaaacacaaaagcaacttaataagaaatgaagtaaaattaccaagtggtcgttcccctgcactgctgcca-aaaataataagcatttccacatcaat |
26059444 |
T |
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| Q |
165 |
catcatcaatattttcatcatccttcatgtacttctcttgcactgctgc |
213 |
Q |
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| T |
26059443 |
catca---atattttcatcatcctttatgtatttctcttgcacttctgc |
26059398 |
T |
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