View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9600_1 (Length: 1095)

Name: NF9600_1
Description: NF9600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9600_1
NF9600_1
[»] chr6 (13 HSPs)
chr6 (1-719)||(4611451-4612185)
chr6 (841-1074)||(4611040-4611273)
chr6 (701-845)||(4611293-4611438)
chr6 (457-627)||(4515344-4515512)
chr6 (737-814)||(31265835-31265913)
chr6 (737-841)||(14312621-14312723)
chr6 (743-814)||(14306220-14306292)
chr6 (736-843)||(4238451-4238554)
chr6 (737-844)||(7301055-7301158)
chr6 (737-806)||(3604573-3604643)
chr6 (1011-1073)||(4515685-4515747)
chr6 (737-813)||(15081480-15081557)
chr6 (42-121)||(4572668-4572746)
[»] scaffold0006 (1 HSPs)
scaffold0006 (737-814)||(229879-229956)
[»] chr7 (22 HSPs)
chr7 (737-814)||(27234559-27234636)
chr7 (714-803)||(11616629-11616723)
chr7 (737-814)||(37490591-37490669)
chr7 (739-814)||(33584619-33584695)
chr7 (737-844)||(30463045-30463150)
chr7 (737-814)||(47454060-47454138)
chr7 (737-839)||(5724681-5724780)
chr7 (686-793)||(45890775-45890888)
chr7 (744-844)||(31581423-31581521)
chr7 (737-814)||(2846649-2846727)
chr7 (737-806)||(5083445-5083515)
chr7 (742-814)||(38181852-38181925)
chr7 (737-793)||(44604451-44604508)
chr7 (737-814)||(7425850-7425929)
chr7 (744-844)||(23703945-23704043)
chr7 (760-803)||(29434577-29434620)
chr7 (740-798)||(32776055-32776114)
chr7 (737-803)||(36117729-36117796)
chr7 (737-814)||(2842025-2842103)
chr7 (737-814)||(29257603-29257681)
chr7 (737-813)||(8150016-8150092)
chr7 (737-814)||(49100476-49100553)
[»] chr8 (24 HSPs)
chr8 (714-814)||(5392105-5392211)
chr8 (737-840)||(2349383-2349485)
chr8 (739-814)||(45425541-45425617)
chr8 (737-814)||(44790395-44790473)
chr8 (711-813)||(4480412-4480519)
chr8 (737-803)||(5962446-5962513)
chr8 (737-814)||(9014759-9014837)
chr8 (737-814)||(29730869-29730947)
chr8 (737-803)||(12653754-12653821)
chr8 (736-814)||(31132786-31132865)
chr8 (737-844)||(22324928-22325033)
chr8 (737-798)||(39171615-39171677)
chr8 (737-803)||(38252410-38252478)
chr8 (741-803)||(21587344-21587403)
chr8 (737-791)||(28802846-28802901)
chr8 (737-841)||(32967250-32967352)
chr8 (737-802)||(139090-139156)
chr8 (737-814)||(7258340-7258418)
chr8 (737-798)||(32241397-32241459)
chr8 (737-814)||(33190882-33190960)
chr8 (737-843)||(37219734-37219841)
chr8 (737-814)||(42412356-42412434)
chr8 (737-841)||(45197643-45197744)
chr8 (742-840)||(34133160-34133256)
[»] chr4 (30 HSPs)
chr4 (741-814)||(4360385-4360459)
chr4 (737-814)||(18849732-18849810)
chr4 (741-803)||(283454-283517)
chr4 (737-841)||(38160125-38160227)
chr4 (737-814)||(8295085-8295163)
chr4 (686-814)||(22872303-22872439)
chr4 (737-815)||(42185769-42185848)
chr4 (737-814)||(28974362-28974440)
chr4 (760-814)||(41436537-41436591)
chr4 (842-888)||(49448763-49448809)
chr4 (737-814)||(49448897-49448975)
chr4 (737-814)||(49812285-49812363)
chr4 (737-814)||(54729457-54729535)
chr4 (737-814)||(4727577-4727654)
chr4 (711-790)||(17237123-17237208)
chr4 (737-843)||(41203767-41203871)
chr4 (737-793)||(49306664-49306721)
chr4 (741-803)||(39976371-39976430)
chr4 (842-910)||(44022018-44022085)
chr4 (737-815)||(4357622-4357701)
chr4 (760-815)||(33047547-33047602)
chr4 (737-803)||(35909546-35909613)
chr4 (737-799)||(38977063-38977126)
chr4 (737-814)||(26185238-26185316)
chr4 (737-798)||(30568735-30568797)
chr4 (737-814)||(39979836-39979914)
chr4 (737-814)||(41710117-41710195)
chr4 (766-803)||(3686078-3686115)
chr4 (761-818)||(28279889-28279946)
chr4 (737-793)||(42024174-42024231)
[»] chr3 (27 HSPs)
chr3 (684-841)||(53876351-53876511)
chr3 (737-803)||(9017868-9017935)
chr3 (737-814)||(39866526-39866604)
chr3 (737-814)||(43639489-43639567)
chr3 (737-814)||(54122197-54122275)
chr3 (737-815)||(5245467-5245546)
chr3 (711-803)||(2868641-2868739)
chr3 (737-814)||(11251100-11251178)
chr3 (686-814)||(17776911-17777045)
chr3 (686-814)||(19078212-19078346)
chr3 (737-814)||(21296476-21296554)
chr3 (737-790)||(26134676-26134730)
chr3 (737-814)||(33994713-33994791)
chr3 (760-844)||(48744288-48744369)
chr3 (708-803)||(10855061-10855162)
chr3 (737-803)||(32023073-32023141)
chr3 (737-839)||(32827277-32827377)
chr3 (760-840)||(41031605-41031685)
chr3 (737-796)||(39365010-39365071)
chr3 (687-814)||(14756032-14756165)
chr3 (767-841)||(54458313-54458384)
chr3 (741-803)||(36097632-36097695)
chr3 (737-798)||(8706218-8706280)
chr3 (737-798)||(9058105-9058167)
chr3 (737-798)||(54783035-54783097)
chr3 (737-798)||(55415412-55415474)
chr3 (737-793)||(1772079-1772136)
[»] chr2 (28 HSPs)
chr2 (737-814)||(28572264-28572341)
chr2 (737-841)||(23684991-23685093)
chr2 (737-840)||(30757541-30757642)
chr2 (737-841)||(28301466-28301568)
chr2 (737-814)||(2882041-2882119)
chr2 (737-844)||(24775781-24775886)
chr2 (711-814)||(43950390-43950499)
chr2 (684-798)||(28527036-28527156)
chr2 (737-803)||(15859318-15859385)
chr2 (737-803)||(36155580-36155647)
chr2 (737-791)||(40965093-40965148)
chr2 (737-814)||(565145-565223)
chr2 (737-814)||(2756730-2756808)
chr2 (737-814)||(3100456-3100534)
chr2 (760-814)||(18181210-18181264)
chr2 (742-803)||(28108353-28108415)
chr2 (737-840)||(28925821-28925922)
chr2 (737-844)||(43077699-43077804)
chr2 (737-814)||(7649949-7650026)
chr2 (737-793)||(33755334-33755391)
chr2 (737-814)||(13375161-13375240)
chr2 (737-841)||(37247857-37247959)
chr2 (737-798)||(5211931-5211993)
chr2 (737-818)||(36103274-36103356)
chr2 (737-791)||(41436158-41436212)
chr2 (737-814)||(44534456-44534534)
chr2 (739-841)||(435053-435153)
chr2 (850-923)||(5007686-5007759)
[»] chr1 (32 HSPs)
chr1 (744-841)||(17342860-17342955)
chr1 (737-841)||(32587797-32587899)
chr1 (737-840)||(50267412-50267513)
chr1 (737-814)||(52830388-52830466)
chr1 (738-844)||(26756005-26756109)
chr1 (737-844)||(28277009-28277117)
chr1 (737-803)||(32348285-32348352)
chr1 (685-798)||(49945004-49945123)
chr1 (736-814)||(51749156-51749235)
chr1 (737-814)||(3555529-3555607)
chr1 (737-814)||(42926190-42926268)
chr1 (737-818)||(21304781-21304862)
chr1 (841-888)||(13500862-13500909)
chr1 (737-837)||(19532893-19532991)
chr1 (697-814)||(27391403-27391526)
chr1 (686-815)||(46536395-46536530)
chr1 (737-814)||(17724688-17724766)
chr1 (737-814)||(28839395-28839473)
chr1 (737-840)||(36467169-36467270)
chr1 (737-798)||(52432384-52432446)
chr1 (737-798)||(2571435-2571495)
chr1 (737-794)||(43895923-43895980)
chr1 (737-790)||(10370158-10370213)
chr1 (716-814)||(34813973-34814077)
chr1 (760-803)||(8773309-8773352)
chr1 (737-814)||(45889221-45889300)
chr1 (737-814)||(5040549-5040627)
chr1 (737-814)||(5442396-5442474)
chr1 (760-814)||(34877088-34877142)
chr1 (737-793)||(8327794-8327851)
chr1 (761-818)||(40019059-40019116)
chr1 (737-813)||(40019816-40019893)
[»] chr5 (21 HSPs)
chr5 (737-815)||(11099451-11099530)
chr5 (737-814)||(3725242-3725320)
chr5 (737-840)||(7613740-7613841)
chr5 (737-803)||(39008199-39008266)
chr5 (711-803)||(15814709-15814807)
chr5 (737-840)||(25814397-25814498)
chr5 (737-814)||(33988256-33988334)
chr5 (737-839)||(6610871-6610971)
chr5 (720-815)||(35666940-35667039)
chr5 (760-814)||(8369694-8369748)
chr5 (737-814)||(8692792-8692870)
chr5 (737-814)||(35646063-35646141)
chr5 (737-798)||(41184732-41184794)
chr5 (685-789)||(42211410-42211520)
chr5 (737-814)||(42575612-42575690)
chr5 (841-917)||(12678268-12678345)
chr5 (737-841)||(20189924-20190027)
chr5 (736-814)||(32539718-32539797)
chr5 (737-798)||(16283561-16283623)
chr5 (737-814)||(36469068-36469146)
chr5 (711-814)||(858391-858500)
[»] scaffold0034 (1 HSPs)
scaffold0034 (737-803)||(98892-98959)
[»] scaffold0321 (1 HSPs)
scaffold0321 (741-814)||(9529-9603)
[»] scaffold0578 (1 HSPs)
scaffold0578 (850-923)||(3919-3992)


Alignment Details
Target: chr6 (Bit Score: 542; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 1 - 719
Target Start/End: Complemental strand, 4612185 - 4611451
Alignment:
Q  1 aaaaagataatagaggaaaagacaaggaagcttacaaagtctgagatatttttcttttaaaatgaaaaaattccaacttaacacaataattgatgcatac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4612185 aaaaagataatagaggaaaagacaaggaagcttacaaagtctgagatatttttcttttaaaatgaaaaaattccaacttaacacaataattgatgcatac 4612086  T
Q  101 tagtgaaaccaccactttttgatatactctatgagaaaactagaataannnnnnnn-aattaaaaaagataatagaaaacaacatagtgtacattttagt 199  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||| ||||||||||||||||||||||||    
T  4612085 tagtgaagccaccactttttgatatactctatgagaaaactagaataatttttttttaattaaaaaagataatagcaaacaacatagtgtacattttagt 4611986  T
Q  200 ttgtggtggtgagaattgatttgtgtgattaaaaacaaatggttaagattaaactgtgtgaaaattggtcaaacaaatctgaaccaatgaatcacttttt 299  Q
    |||||| |||||||||||||||||  |||||||||| ||||||||| |||||||||||||||||||  ||||| ||| ||||||||||||||||||||||    
T  4611985 ttgtgggggtgagaattgatttgtccgattaaaaacgaatggttaaaattaaactgtgtgaaaatttatcaaataaaactgaaccaatgaatcacttttt 4611886  T
Q  300 tatggtcgagatctactatgcgtaaagcagttacagcaga---------tcccttcttaaactaaaattttgcatgcaatggcag--ttcgataaccttt 388  Q
    |||||||||||||||   ||| ||||||||||||||||||         ||||||||||||||||||||||||||||| ||||||  |||||||||||||    
T  4611885 tatggtcgagatctatactgcataaagcagttacagcagaagatccagatcccttcttaaactaaaattttgcatgca-tggcagctttcgataaccttt 4611787  T
Q  389 ccacgattataaagactatttaatttaattggacaaatattagtgcaaggtccactaaatcaataaatatatgattgtggacctccaccataagttttat 488  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  4611786 ccacgattataaagactatttaatttaattggacaaatattagtgcaaggtc-actaaatcaataaatatatgattgtggacctccaccataagttttat 4611688  T
Q  489 tcttgagctcatgcaagctacacaacgaaacactatctgatatcatcaagacttatccatccaaaatatatatatgctgcagctgcact-----ctacat 583  Q
    ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||    
T  4611687 tcttgagctcatgcaagccgcacaacgaaacactatctgatatcatcaagacttatccatccaaaatatatatatgctgcagctgcactctactctacat 4611588  T
Q  584 attcaaaatataattttatatcattcaactcaattattagaaaaggtataacagattcatcacatttaacagaaatgattctgg-ttttttgcccaaaaa 682  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||    
T  4611587 attcaaaatataattttatatcattcaactcaattattagaaaaggtataacagattcatcacatttaacagaaatgattctggtttttttccccaaaaa 4611488  T
Q  683 taatactccctcagtcctaaattcacttagtcatttg 719  Q
    |||||||||||| ||||||||||||||||||||||||    
T  4611487 taatactccctcggtcctaaattcacttagtcatttg 4611451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 177; E-Value: 7e-95
Query Start/End: Original strand, 841 - 1074
Target Start/End: Complemental strand, 4611273 - 4611040
Alignment:
Q  841 aaaaagtgaaatggataagttattttaaaacaataattttttacaaaatgatcatttattaaaggacggaatgagtagcaaatcaattnnnnnnnttgag 940  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||| ||| |||||        ||||    
T  4611273 aaaaagtaaaatggataagttattttaaaacaataattttttacaaaatgatcacttattaaagtacagaatgagtagtaaaacaattaaaaaaaatgag 4611174  T
Q  941 tatagactgaagttgcaaaatttaactctatgaaattttttatgcttgacatataattattcaattgcatatacttaaaccatttaagatttgccagaat 1040  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4611173 tatagattgaagttgcaaaatttaactctatgaaattttttatgcttgacatataattaatcaattgcatatacttaaaccatttaagatttgccagaat 4611074  T
Q  1041 cacaacttaaatttaggaactcttgctgatgatg 1074  Q
    ||||||||||||||||||||||||||||||||||    
T  4611073 cacaacttaaatttaggaactcttgctgatgatg 4611040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 126; E-Value: 2e-64
Query Start/End: Original strand, 701 - 845
Target Start/End: Complemental strand, 4611438 - 4611293
Alignment:
Q  701 aaattcacttagtcatttgctcatttcacatttattaaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcatttt 800  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  4611438 aaattcacttagtcatttgctcatttcacatttattaaatgtataaatgaaggatagagaaaatgattttaagtgcttttgttaagtattggtgcatttt 4611339  T
Q  801 ccattagcataaatataataaatt-gaaatatattgaattgaaaaa 845  Q
    |||||||||||||||||||||||| |||||| ||||||||||||||    
T  4611338 ccattagcataaatataataaattggaaataaattgaattgaaaaa 4611293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 3e-51
Query Start/End: Original strand, 457 - 627
Target Start/End: Original strand, 4515344 - 4515512
Alignment:
Q  457 atatgattgtggacctccaccataagttttattcttgagctcatgcaagctacacaacgaaacactatctgatatcatcaagacttatccatccaaaata 556  Q
    ||||||||||||||| |||||||||||||| ||| | |||| ||||||||||||||  |||||| | |||||| | ||||||||| || |||||||||||    
T  4515344 atatgattgtggaccaccaccataagttttgttcctaagcttatgcaagctacaca--gaaacagtgtctgatgttatcaagactcattcatccaaaata 4515441  T
Q  557 tatatatgctgcagctgcactctacatattcaaaatataattttatatcattcaactcaattattagaaaa 627  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||    
T  4515442 tatatatgctgcagcttcactctacatattcaaaatataattttatatcattcaactcgattaatagaaaa 4515512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 31265913 - 31265835
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| |||||||| | |||||||||||| |||||||||||||||||||| |||| || |||||||    
T  31265913 aaatgtataaatgaaggagagagaaaaatagttttaagtgctcttgttaagtattggtgcattctccactatcataaat 31265835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 737 - 841
Target Start/End: Original strand, 14312621 - 14312723
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    ||||| |||||||||||| | |||||| || ||||||||| |||||||||||||||||||||| ||||||| |||||||    |||| |||||| |||||    
T  14312621 aaatgcataaatgaaggacatagaaaaatggttttaagtgtttttgttaagtattggtgcattctccattatcataaat---gtaaagtgaaatgtattg 14312717  T
Q  836 aattga 841  Q
    ||||||    
T  14312718 aattga 14312723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 743 - 814
Target Start/End: Original strand, 14306220 - 14306292
Alignment:
Q  743 ataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||| | |||||| || ||||||||| |||||||||||||||||||||| ||||||| |||||||    
T  14306220 ataaatgaaggacatagaaaaatggttttaagtgtttttgttaagtattggtgcattctccattatcataaat 14306292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 736 - 843
Target Start/End: Complemental strand, 4238554 - 4238451
Alignment:
Q  736 taaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||||||| || ||| || || |||||||||||| |||||||||||||||||||| | || || |||||||    |||| |||||| |||||    
T  4238554 taaatgtataaatgaaagagaga-aatatagttttaagtgctcttgttaagtattggtgcattcttcactatcataaat---gtaaagtgaaatctattg 4238459  T
Q  836 aattgaaa 843  Q
    ||||||||    
T  4238458 aattgaaa 4238451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 737 - 844
Target Start/End: Original strand, 7301055 - 7301158
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattga 836  Q
    |||||||||||| || || ||| ||||| ||||||||||  ||||||||||||| ||||||| ||||||| |||||||    |||| || ||||||||||    
T  7301055 aaatgtataaataaatgagaga-aaaatagttttaagtgtgtttgttaagtatttgtgcattctccattatcataaat---gtaaagtggaatatattga 7301150  T
Q  837 attgaaaa 844  Q
    ||||||||    
T  7301151 attgaaaa 7301158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 806
Target Start/End: Original strand, 3604573 - 3604643
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccatta 806  Q
    |||||||||||| || || |||||||| || |||||||| || |||||||||||||||||||| |||||||    
T  3604573 aaatgtataaataaaagagagagaaaaatggttttaagttctcttgttaagtattggtgcattctccatta 3604643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 1011 - 1073
Target Start/End: Original strand, 4515685 - 4515747
Alignment:
Q  1011 atacttaaaccatttaagatttgccagaatcacaacttaaatttaggaactcttgctgatgat 1073  Q
    ||||| ||| ||||||||||| |||||||||||||||| | |||||||||||  |||||||||    
T  4515685 atactcaaaacatttaagattagccagaatcacaacttcagtttaggaactccagctgatgat 4515747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 737 - 813
Target Start/End: Complemental strand, 15081557 - 15081480
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaa 813  Q
    |||||||||||||||||  |||||||| | |||||||||||  |||||||||||| ||||||| |||| || ||||||    
T  15081557 aaatgtataaatgaaggtgagagaaaaatagttttaagtgcacttgttaagtatttgtgcattctccactatcataaa 15081480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 42 - 121
Target Start/End: Original strand, 4572668 - 4572746
Alignment:
Q  42 tgagatatttttcttttaaaatgaaaaaattccaacttaacacaataattgatgcatactagtgaaaccaccactttttg 121  Q
    |||||| |||||||| ||| |||||| ||||| || | | ||||||||||||||||||||||| ||  ||||||||||||    
T  4572668 tgagatctttttcttataatatgaaataattctaagtga-cacaataattgatgcatactagtcaagtcaccactttttg 4572746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 54; Significance: 2e-21; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 229956 - 229879
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| | |||||| ||||||||||||| |||||||||||||||||||| ||||||| |||||||    
T  229956 aaatgtataaatgaaggagatagaaaaatgttttaagtgctcttgttaagtattggtgcattctccattatcataaat 229879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 5e-19; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 5e-19
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 27234636 - 27234559
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| || |||||||||||||||||||| ||||||||||||||| |||||| |||| || |||||||    
T  27234636 aaatgtataaatgaatgacagagaaaattgttttaagtgtttttgttaagtattgatgcattctccactatcataaat 27234559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 714 - 803
Target Start/End: Complemental strand, 11616723 - 11616629
Alignment:
Q  714 catttgctcatttcacatttattaaa----tgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||||||||||||||||  |||||||    ||||||||||||||| |||||||| || ||||||||||| |||||||||||||||||||| ||||    
T  11616723 catttgctcatttcacacatattaaaaaaatgtataaatgaaggagagagaaaaatggttttaagtgctcttgttaagtattggtgcattctcca 11616629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 37490591 - 37490669
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| |||||||| || ||||||||| |||| ||||||||||||||||| |||| || |||||||    
T  37490591 aaatgtataaatgaaggagagagaaaaatgattttaagtgttttttttaagtattggtgcattctccactatcataaat 37490669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 739 - 814
Target Start/End: Complemental strand, 33584695 - 33584619
Alignment:
Q  739 atgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||| |||||||| || ||||||||||| |||||||||||||||| ||| |||| || |||||||    
T  33584695 atgtataaatgaaggagagagaaaaatggttttaagtgctattgttaagtattggtgtattctccagtatcataaat 33584619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 844
Target Start/End: Complemental strand, 30463150 - 30463045
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    ||||||||||||||| || |||||||| | |||||||||||  |||||||||||||||||||| ||||  | |||||||    |||| || |||||||||    
T  30463150 aaatgtataaatgaatgagagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccacaatcataaat---gtaaaatggaatatattg 30463054  T
Q  836 aattgaaaa 844  Q
    |||||||||    
T  30463053 aattgaaaa 30463045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 47454138 - 47454060
Alignment:
Q  737 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||| ||||||||||||| |||| ||||| |||||||||||  |||||||||||||||||||| |||| || |||||||    
T  47454138 aaatatataaatgaaggagagagtaaaatagttttaagtgcacttgttaagtattggtgcattctccactatcataaat 47454060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 737 - 839
Target Start/End: Original strand, 5724681 - 5724780
Alignment:
Q  737 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||||||||| |||| ||||| |||||||||||  |||||||||||| ||||||| |||| || |||||||    |||| ||||||||||||    
T  5724681 aaatgtataaatgaaggagagagaaaaatagttttaagtgc-cttgttaagtattagtgcattctccactatcataaat---gtaaagtgaaatatattg 5724776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 686 - 793
Target Start/End: Original strand, 45890775 - 45890888
Alignment:
Q  686 tactccctcagtcctaaattcacttagtcatttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaattg-ttttaagtgcttt 779  Q
    ||||||||| ||||| |||| ||| ||| ||||| ||||||||||  ||||||     ||||||||| |||||| |||||||| || |||||| ||||||    
T  45890775 tactccctccgtcctgaattaactgagttatttgttcatttcacacgtattaagaaaaatgtataaaagaaggagagagaaaaatggttttaaatgcttt 45890874  T
Q  780 tgttaagtattggt 793  Q
    ||||||||||||||    
T  45890875 tgttaagtattggt 45890888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 744 - 844
Target Start/End: Original strand, 31581423 - 31581521
Alignment:
Q  744 taaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattgaa 842  Q
    ||||||||||| ||| |||| | ||||||||| | ||||||||||||||||||||| |||| || |||||||    |||| || ||||||||||||||||    
T  31581423 taaatgaaggagagataaaaatagttttaagtacatttgttaagtattggtgcattctccaatatcataaat---gtaaaatggaatatattgaattgaa 31581519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 2846649 - 2846727
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| || |||||||| | |||||||||||| |||||||||||||||  ||| |||| || |||||||    
T  2846649 aaatgtataaatgaacgagagagaaaaatagttttaagtgctcttgttaagtattggtctattctccactatcataaat 2846727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 806
Target Start/End: Original strand, 5083445 - 5083515
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccatta 806  Q
    |||||||||||| ||||| ||| |||| | |||||||||||| |||||||||||||||||||  |||||||    
T  5083445 aaatgtataaataaaggaaagataaaaatagttttaagtgctcttgttaagtattggtgcatactccatta 5083515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 742 - 814
Target Start/End: Original strand, 38181852 - 38181925
Alignment:
Q  742 tataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||| || |||||||| || ||||||||| | ||| ||||||||||||||||||||| || |||||||    
T  38181852 tataaatgaaagagagagaaaaatggttttaagtgttcttggtaagtattggtgcattttccactatcataaat 38181925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 737 - 793
Target Start/End: Original strand, 44604451 - 44604508
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggt 793  Q
    |||||||||||||||||| |||||||| || ||||||||| | |||||||||||||||    
T  44604451 aaatgtataaatgaaggagagagaaaaatgattttaagtgttcttgttaagtattggt 44604508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 7425850 - 7425929
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgtt-aagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| || |||||||| || ||||||||| | ||||| ||||||||||||||| |||| || |||||||    
T  7425850 aaatgtataaatgaatgagagagaaaaatggttttaagtgttcttgtttaagtattggtgcattctccactatcataaat 7425929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 744 - 844
Target Start/End: Complemental strand, 23704043 - 23703945
Alignment:
Q  744 taaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattgaa 842  Q
    ||||||||||| |||||||| | |||||||| ||  ||||||| ||||| |||||| |||| || ||||||| ||| |   |||||||||||||||||||    
T  23704043 taaatgaaggagagagaaaaatagttttaagcgcacttgttaattattgctgcattctccactatcataaatgtaaaa---tgaaatatattgaattgaa 23703947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 760 - 803
Target Start/End: Original strand, 29434577 - 29434620
Alignment:
Q  760 aaaattgttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    ||||| ||||||||||||||||||||||||||||| ||| ||||    
T  29434577 aaaatagttttaagtgcttttgttaagtattggtggattctcca 29434620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 740 - 798
Target Start/End: Complemental strand, 32776114 - 32776055
Alignment:
Q  740 tgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 798  Q
    ||||||| ||||||| |||||||| || |||| ||||| |||||||||||||||||||||    
T  32776114 tgtataagtgaaggagagagaaaaatggttttgagtgcctttgttaagtattggtgcatt 32776055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 737 - 803
Target Start/End: Complemental strand, 36117796 - 36117729
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||||||||||| ||||| |||||||| | |||||||||||  |||||||||||| ||||||| ||||    
T  36117796 aaatgtataaataaaggaaagagaaaaatagttttaagtgcacttgttaagtatttgtgcattctcca 36117729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 2842025 - 2842103
Alignment:
Q  737 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| |||| ||||| || ||||||| | |||| |||||||| |||||| |||| || |||||||    
T  2842025 aaatgtataaatgaaggagagagaaaaatggtgttaagtgttattgtcaagtattgatgcattctccactatcataaat 2842103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 29257681 - 29257603
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||| | ||| |||| || ||||||||||| ||||||| |||||||  |||||||| || |||||||    
T  29257681 aaatgtataaatgaagcagagaaaaaaatggttttaagtgctcttgttaattattggtctattttccactatcataaat 29257603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 737 - 813
Target Start/End: Complemental strand, 8150092 - 8150016
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaa 813  Q
    |||||||||| |||| || |||||||| || ||||||||| |||||| || |||| ||||||||||||||| ||||||    
T  8150092 aaatgtataagtgaaagagagagaaaaatggttttaagtg-ttttgtcaaatatttgtgcattttccattatcataaa 8150016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 49100476 - 49100553
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| || |||||||| |  |||||||||  |||||||||||||||  ||| |||| || |||||||    
T  49100476 aaatgtataaatgaaagacagagaaaaatagtttaagtgcacttgttaagtattggtttattctccactatcataaat 49100553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 3e-17; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 714 - 814
Target Start/End: Complemental strand, 5392211 - 5392105
Alignment:
Q  714 catttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattag 807  Q
    |||||||||||||||||  ||||     |||||||||||||||||| |||| ||||| ||||||||||||||||| ||||||||||||||| |||| ||     
T  5392211 catttgctcatttcacacctattaagacaaatgtataaatgaaggagagagaaaaatggttttaagtgcttttgtcaagtattggtgcattctccactat 5392112  T
Q  808 cataaat 814  Q
    |||||||    
T  5392111 cataaat 5392105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 737 - 840
Target Start/End: Complemental strand, 2349485 - 2349383
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaa--ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatatt 834  Q
    |||||||||||||||||| ||||||||  | ||||||||||| ||||||||||||| ||||||| |||| || |||||||    ||||||| ||||||||    
T  2349485 aaatgtataaatgaaggagagagaaaaaatagttttaagtgcatttgttaagtatttgtgcattctccactatcataaat---gtaaattggaatatatt 2349389  T
Q  835 gaattg 840  Q
    ||||||    
T  2349388 gaattg 2349383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 739 - 814
Target Start/End: Complemental strand, 45425617 - 45425541
Alignment:
Q  739 atgtataaatgaaggatagaga-aaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||| ||||| |||| |||||||||||| ||||||||||||| ||||||||||| || |||||||    
T  45425617 atgtataaatgaaggagagagacaaatggttttaagtgctcttgttaagtattgatgcattttccactatcataaat 45425541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 44790395 - 44790473
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| |||||||| | |||||||||||  |||||||||||||||||||| |||| || |||||||    
T  44790395 aaatgtataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccactatcataaat 44790473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 711 - 813
Target Start/End: Original strand, 4480412 - 4480519
Alignment:
Q  711 agtcatttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccatt 805  Q
    |||||||||||||||| |||| ||||||     ||||||||||||| || |||||||| | |||||| | ||||||||| ||||||||||||| |||| |    
T  4480412 agtcatttgctcatttaacatatattaagaaaaatgtataaatgaaagagagagaaaaatattttaaatacttttgttatgtattggtgcattctccagt 4480511  T
Q  806 agcataaa 813  Q
    | ||||||    
T  4480512 atcataaa 4480519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 737 - 803
Target Start/End: Original strand, 5962446 - 5962513
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||||||||||||||||| | ||||||   ||||||||||||||||||||||||||||||||| ||||    
T  5962446 aaatgtataaatgaaggagatagaaaaaacgttttaagtgcttttgttaagtattggtgcattctcca 5962513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 9014837 - 9014759
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||| ||||||||||| | |||||||| || ||||||||||||||||||||||||| |||||| |||| || |||||||    
T  9014837 aaatatataaatgaagaagagagaaaaatgattttaagtgcttttgttaagtattgatgcattctccactatcataaat 9014759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 29730869 - 29730947
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||| ||||||||||||| |||||||| || ||||||||| | |||||||||||||||||||| |||| || |||||||    
T  29730869 aaatatataaatgaaggagagagaaaagtggttttaagtgttcttgttaagtattggtgcattctccactatcataaat 29730947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 737 - 803
Target Start/End: Complemental strand, 12653821 - 12653754
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||||||||||||||| | |||||||| | ||||||||||| |||||||| |||||||||||| ||||    
T  12653821 aaatgtataaatgaagtagagagaaaaatagttttaagtgcgtttgttaaatattggtgcattatcca 12653754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 736 - 814
Target Start/End: Complemental strand, 31132865 - 31132786
Alignment:
Q  736 taaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||| | ||||||||||||||| || ||||||||||| |||||||||||||||  ||| |||| || |||||||    
T  31132865 taaatgtatagacgaaggatagagaaaaatgattttaagtgctcttgttaagtattggtatattctccagtatcataaat 31132786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 844
Target Start/End: Original strand, 22324928 - 22325033
Alignment:
Q  737 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||||||||| |||| |||||  |||||||||   ||||||| |||| |||||||||||| || |||||||    |||| || |||||||||    
T  22324928 aaatgtataaatgaaggagagagaaaaataattttaagtgtacttgttaaatattagtgcattttccactatcataaat---gtaaagtggaatatattg 22325024  T
Q  836 aattgaaaa 844  Q
    |||||||||    
T  22325025 aattgaaaa 22325033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 798
Target Start/End: Complemental strand, 39171677 - 39171615
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 798  Q
    |||| ||||||||||||| |||||||| || |||||||| |||||||||||||||| ||||||    
T  39171677 aaatatataaatgaaggagagagaaaaatggttttaagtacttttgttaagtattgatgcatt 39171615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 737 - 803
Target Start/End: Original strand, 38252410 - 38252478
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaa--ttgttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||||||||||||||||| ||||||||  | |||||||||||  |||||||||||| ||||||| ||||    
T  38252410 aaatgtataaatgaaggagagagaaaaaatagttttaagtgcacttgttaagtattagtgcattctcca 38252478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 741 - 803
Target Start/End: Complemental strand, 21587403 - 21587344
Alignment:
Q  741 gtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||||||||||||| ||||||    |||||||||||| |||||||||||||||||||| ||||    
T  21587403 gtataaatgaaggagagagaag---gttttaagtgctcttgttaagtattggtgcattctcca 21587344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 737 - 791
Target Start/End: Complemental strand, 28802901 - 28802846
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattg 791  Q
    ||||||||||||||| || |||||||| || ||||||||||| |||||||||||||    
T  28802901 aaatgtataaatgaaagagagagaaaaatggttttaagtgctcttgttaagtattg 28802846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 737 - 841
Target Start/End: Original strand, 32967250 - 32967352
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||||||| | |||||||| | |||||||||||  || |||||||||||| |||| |||| || |||||||    |||| || |||||||||    
T  32967250 aaatgtataaatgaagaagagagaaaaatagttttaagtgcacttcttaagtattggtccattctccactatcataaat---ttaaagtggaatatattg 32967346  T
Q  836 aattga 841  Q
    ||||||    
T  32967347 aattga 32967352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 802
Target Start/End: Complemental strand, 139156 - 139090
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcc 802  Q
    ||||||||||||||| || ||| |||| || |||||| | || ||||||||||||||||||||||||    
T  139156 aaatgtataaatgaatgagagataaaaatgattttaaattctcttgttaagtattggtgcattttcc 139090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 7258340 - 7258418
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||| ||| ||||||||| |||||||| || ||||||| ||| |||| ||||||||||||||||  ||||| |||||||    
T  7258340 aaatatattaatgaaggaaagagaaaaatggttttaagcgctcttgtcaagtattggtgcatttatcattatcataaat 7258418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 798
Target Start/End: Original strand, 32241397 - 32241459
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 798  Q
    |||||||||||||||||| ||| |||| || ||||||||| | ||||||||||||| ||||||    
T  32241397 aaatgtataaatgaaggagagataaaaatgattttaagtgttcttgttaagtattgatgcatt 32241459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 33190882 - 33190960
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||| | |||||||| || ||||||||| | ||||||||||||  |||||| |||| || |||||||    
T  33190882 aaatgtataaatgaagaagagagaaaaatgattttaagtgttcttgttaagtattaatgcattctccactatcataaat 33190960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 843
Target Start/End: Original strand, 37219734 - 37219841
Alignment:
Q  737 aaatgtataaatgaaggatagagaaa-attgttttaag---tgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatata 832  Q
    |||||||||||||||||| ||||||| ||  |||||||   || | ||||||||||| |||||||| ||| ||| |||||||   ||||| |||||||||    
T  37219734 aaatgtataaatgaaggagagagaaatatgattttaagtgttgttgttgttaagtatgggtgcattctcccttatcataaat---ataaagtgaaatata 37219830  T
Q  833 ttgaattgaaa 843  Q
    || ||||||||    
T  37219831 ttaaattgaaa 37219841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 42412356 - 42412434
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||| |||| || |||||||| | |||||||||||| |||| |  |||||||||||| ||||||| |||||||    
T  42412356 aaatgtataagtgaatgagagagaaaaatagttttaagtgctcttgtcatatattggtgcattctccattatcataaat 42412434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 841
Target Start/End: Complemental strand, 45197744 - 45197643
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattga 836  Q
    |||| |||||||||| || ||| |||||  ||||||||| ||||||||||||||| |||||| | || |  |||||||    |||| |||||||||||||    
T  45197744 aaatatataaatgaatgagagaaaaaatgattttaagtgtttttgttaagtattgatgcattcttcactgtcataaat---gtaaaatgaaatatattga 45197648  T
Q  837 attga 841  Q
    |||||    
T  45197647 attga 45197643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 742 - 840
Target Start/End: Complemental strand, 34133256 - 34133160
Alignment:
Q  742 tataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattg 840  Q
    ||||||| ||||| |||||||| |  ||||||||||  |||||||||||||| ||||| |||| || |||||||    |||| |||||||||||||||||    
T  34133256 tataaataaaggagagagaaaaataattttaagtgcacttgttaagtattggcgcattctccactatcataaat---gtaaaatgaaatatattgaattg 34133160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 741 - 814
Target Start/End: Original strand, 4360385 - 4360459
Alignment:
Q  741 gtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||| || |||||||| || |||||||||||||||||||||||||||||||| |||| ||||||||||    
T  4360385 gtataaatgaatgaaagagaaaaatggttttaagtgcttttgttaagtattggtgcattctccactagcataaat 4360459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 18849732 - 18849810
Alignment:
Q  737 aaatgtataaatgaaggatagagaaa-attgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| | ||||| || |||||||||||| |||||||||||||||||||| |||| || |||||||    
T  18849732 aaatgtataaatgaaggagaaagaaatatggttttaagtgctcttgttaagtattggtgcattctccactatcataaat 18849810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 741 - 803
Target Start/End: Original strand, 283454 - 283517
Alignment:
Q  741 gtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||||||||||||| |||||||| |||||||||||||| |||||||||||| ||||||| ||||    
T  283454 gtataaatgaaggagagagaaaaattgttttaagtgctcttgttaagtatttgtgcattctcca 283517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 737 - 841
Target Start/End: Original strand, 38160125 - 38160227
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||| ||||| |||||||| ||||||||||||  ||||| || ||||| |||||| ||||||| |||||||   | ||| ||||||||||||    
T  38160125 aaatgtataaataaaggagagagaaaaattgttttaagtgtctttgtcaaatattgatgcattctccattatcataaat---acaaagtgaaatatattg 38160221  T
Q  836 aattga 841  Q
    ||||||    
T  38160222 aattga 38160227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 8295163 - 8295085
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| || |||||||| ||||||||||| || ||| |||||||||||||||| |||| || |||||||    
T  8295163 aaatgtataaatgaaagagagagaaaaattgttttaagtcctcttgataagtattggtgcattctccactatcataaat 8295085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 686 - 814
Target Start/End: Original strand, 22872303 - 22872439
Alignment:
Q  686 tactccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgct-- 777  Q
    ||||||||| |||| ||||| | | || |||||||||||||||||  ||||     |||||||||| ||||| | |||| ||||| ||||||||||||      
T  22872303 tactccctccgtcccaaattaagtgagccatttgctcatttcacacatattaagaaaaatgtataagtgaagaagagagaaaaatggttttaagtgctcg 22872402  T
Q  778 tttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||| ||||||||||||||| ||||||| |||||||    
T  22872403 tttgtcaagtattggtgcattctccattatcataaat 22872439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 737 - 815
Target Start/End: Original strand, 42185769 - 42185848
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaata 815  Q
    |||||||||||||||||| | |||||| || ||||||||||| |||||||||||||||  ||| |||| || ||||||||    
T  42185769 aaatgtataaatgaaggagatagaaaaatgattttaagtgctcttgttaagtattggtctattatccactatcataaata 42185848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 28974440 - 28974362
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| |  ||| |||| || ||||||||| | |||||||||||||||||||| ||||||| |||||||    
T  28974440 aaatgtataaatgaaagggagataaaagtggttttaagtgttgttgttaagtattggtgcattctccattatcataaat 28974362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 760 - 814
Target Start/End: Complemental strand, 41436591 - 41436537
Alignment:
Q  760 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||| || |||||||    
T  41436591 aaaatggttttaagtgcttttgttatgtattggtgcattctccactatcataaat 41436537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 842 - 888
Target Start/End: Complemental strand, 49448809 - 49448763
Alignment:
Q  842 aaaagtgaaatggataagttattttaaaacaataattttttacaaaa 888  Q
    ||||||||||||||| ||||||||||| | |||||||||||||||||    
T  49448809 aaaagtgaaatggatcagttattttaagaaaataattttttacaaaa 49448763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 49448975 - 49448897
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||| ||||||| |||||||| || ||||||||||| |||| ||||||| ||||||| || |||| |||||||    
T  49448975 aaatgtataagtgaaggagagagaaaaatggttttaagtgctcttgtcaagtatttgtgcattctctattatcataaat 49448897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 49812363 - 49812285
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||| ||||||||||||| ||| |||| | |||||||||||  |||||||||||||||||||| |||| || |||||||    
T  49812363 aaatttataaatgaaggagagaaaaaaatagttttaagtgcacttgttaagtattggtgcattatccactatcataaat 49812285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 54729457 - 54729535
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| || |||||||| | |||||||||| |||||||||||||| ||| ||| |||| || |||||||    
T  54729457 aaatgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtattagtgtattctccactatcataaat 54729535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 4727654 - 4727577
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||| ||||| ||||||| |||||||| || ||||| || | ||||||| ||||| |||||||||||||| |||||||    
T  4727654 aaatatataattgaaggagagagaaaaatgatttaaatgttcttgttaaatattgatgcattttccattatcataaat 4727577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 711 - 790
Target Start/End: Complemental strand, 17237208 - 17237123
Alignment:
Q  711 agtcatttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtatt 790  Q
    ||||||||||||||||||||  ||||||     || ||||||||||||| |||||||| | |||||||||| ||||||||||||||    
T  17237208 agtcatttgctcatttcacacctattaagaaaaatatataaatgaaggagagagaaaaatagttttaagtgattttgttaagtatt 17237123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 737 - 843
Target Start/End: Complemental strand, 41203871 - 41203767
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||||||||| | |||||| || |||| |||||| ||||||||||||| |||||| | || || |||||||   | ||| || |||||||||    
T  41203871 aaatgtataaatgaaggagatagaaaaatggtttttagtgctcttgttaagtattgatgcattcttcactaccataaat---acaaagtggaatatattg 41203775  T
Q  836 aattgaaa 843  Q
    ||||||||    
T  41203774 aattgaaa 41203767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 737 - 793
Target Start/End: Complemental strand, 49306721 - 49306664
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggt 793  Q
    ||||||||||||||| || |||||||| || ||||||||||| |||||||||||||||    
T  49306721 aaatgtataaatgaaagagagagaaaaatggttttaagtgctcttgttaagtattggt 49306664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 741 - 803
Target Start/End: Original strand, 39976371 - 39976430
Alignment:
Q  741 gtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||||||||||||| ||||||    |||||||||||| |||||||||||||||||||| ||||    
T  39976371 gtataaatgaaggagagagaag---gttttaagtgctcttgttaagtattggtgcattctcca 39976430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 842 - 910
Target Start/End: Original strand, 44022018 - 44022085
Alignment:
Q  842 aaaagtgaaatggataagttattttaaaacaataattttttacaaaatgatcatttattaaaggacgga 910  Q
    |||| |||||||||| | ||||||||| |||||| |||||||||||||||||| |||| || |||||||    
T  44022018 aaaattgaaatggatcaattattttaagacaata-ttttttacaaaatgatcaattatgaagggacgga 44022085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 737 - 815
Target Start/End: Complemental strand, 4357701 - 4357622
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaata 815  Q
    |||| ||||||||||||| |||||||  || ||||||||| |||||||||||||||||| ||| | || || ||||||||    
T  4357701 aaatatataaatgaaggagagagaaagatgattttaagtgtttttgttaagtattggtggattcttcactatcataaata 4357622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 760 - 815
Target Start/End: Complemental strand, 33047602 - 33047547
Alignment:
Q  760 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaata 815  Q
    ||||| ||||||||||||||||||||||||||||  ||| |||| || ||||||||    
T  33047602 aaaatggttttaagtgcttttgttaagtattggtagattctccactatcataaata 33047547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 737 - 803
Target Start/End: Original strand, 35909546 - 35909613
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    ||||||||||||||| || ||| |||| |  |||||||||  ||||||||||||||||||||||||||    
T  35909546 aaatgtataaatgaatgaaagataaaaataattttaagtgtatttgttaagtattggtgcattttcca 35909613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 737 - 799
Target Start/End: Complemental strand, 38977126 - 38977063
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattt 799  Q
    |||||||||||||||| | |||||||| | |||||||||||  || ||||||||||||||||||    
T  38977126 aaatgtataaatgaagaagagagaaaaatagttttaagtgcacttcttaagtattggtgcattt 38977063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 26185316 - 26185238
Alignment:
Q  737 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| |||| ||||| ||||||| | || |||||||||||||||  ||| |||| || |||||||    
T  26185316 aaatgtataaatgaaggagagagaaaaatggttttaaatactcttgttaagtattggtctattctccactatcataaat 26185238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 798
Target Start/End: Complemental strand, 30568797 - 30568735
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 798  Q
    ||||||||||| |||||| |||||||| || ||||||||| | |||||||||||| |||||||    
T  30568797 aaatgtataaaggaaggaaagagaaaaatggttttaagtgttattgttaagtattagtgcatt 30568735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 39979914 - 39979836
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||| | | |||||| | |||||||||||  ||||||||||| |||||||| |||| || |||||||    
T  39979914 aaatgtataaatgaagtagaaagaaaaatagttttaagtgcacttgttaagtatcggtgcattctccactatcataaat 39979836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 41710117 - 41710195
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||| | ||| |||| || ||||||||||| ||||||| |||||||  |||||||| || |||||||    
T  41710117 aaatgtataaatgaagcagagaaaaaaatggttttaagtgctcttgttaattattggtctattttccactatcataaat 41710195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 766 - 803
Target Start/End: Complemental strand, 3686115 - 3686078
Alignment:
Q  766 gttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  3686115 gttttaagtacttttgttaagtattggtgcattctcca 3686078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 818
Target Start/End: Complemental strand, 28279946 - 28279889
Alignment:
Q  761 aaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataa 818  Q
    |||| ||||| ||||  ||||||||||||||||||||||| | ||| |||||||||||    
T  28279946 aaatagttttgagtgtctttgttaagtattggtgcatttttctttatcataaatataa 28279889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 737 - 793
Target Start/End: Original strand, 42024174 - 42024231
Alignment:
Q  737 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggt 793  Q
    |||||||||||||||||| |||| ||||| ||||||| | || |||||||||||||||    
T  42024174 aaatgtataaatgaaggagagagaaaaatggttttaactactcttgttaagtattggt 42024231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 1e-16; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 684 - 841
Target Start/End: Original strand, 53876351 - 53876511
Alignment:
Q  684 aatactccctcagtcctaaattcacttagtcatttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaattg-ttttaagtgct 777  Q
    ||||||||||| ||||| |||| ||| ||||||||| | |||||| |  ||||||     ||||||||||||||||  || |||| || |||||||||||    
T  53876351 aatactccctccgtcctcaattaactgagtcatttgtttatttcatagatattaagaaaaatgtataaatgaaggagtgaaaaaaatgattttaagtgct 53876450  T
Q  778 tttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattga 841  Q
    |||||||| |||| |||||||||||| || |||||||    |||| ||||||||||||||||||    
T  53876451 tttgttaaatatttgtgcattttccactatcataaat---gtaaagtgaaatatattgaattga 53876511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 737 - 803
Target Start/End: Complemental strand, 9017935 - 9017868
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    ||||||||||||||| || |||||||| | ||||||||||||||||||||||||||||||||| ||||    
T  9017935 aaatgtataaatgaaagagagagaaaaatagttttaagtgcttttgttaagtattggtgcattctcca 9017868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 39866526 - 39866604
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| |||||||| | |||||||||| |||||||||||||||||| ||| |||| || |||||||    
T  39866526 aaatgtataaatgaaggaaagagaaaaatagttttaagtgattttgttaagtattggtgtattctccactatcataaat 39866604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 43639489 - 43639567
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||| ||||||||||||| |||||||| || ||||||||||| ||||||||||||| ||||||||||| || |||||||    
T  43639489 aaatatataaatgaaggagagagaaaaatggttttaagtgctgttgttaagtattgatgcattttccactatcataaat 43639567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 54122197 - 54122275
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| |||||||| | ||||||| || |||||||||||||||||||||| |||| || |||||||    
T  54122197 aaatgtataaatgaaggagagagaaaaatagttttaaatgtttttgttaagtattggtgcattctccactatcataaat 54122275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 737 - 815
Target Start/End: Complemental strand, 5245546 - 5245467
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaata 815  Q
    ||||||||| |||||||| |||||||| | |||||||||||| |||||||||||||||| ||| |||| || ||||||||    
T  5245546 aaatgtatacatgaaggagagagaaaaatagttttaagtgctcttgttaagtattggtgtattctccaatatcataaata 5245467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 711 - 803
Target Start/End: Complemental strand, 2868739 - 2868641
Alignment:
Q  711 agtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    ||||||||||||||||||||  ||||     |||||||||||||||||| |||| ||||| ||||||||| ||||||||| |||||| |||||| ||||    
T  2868739 agtcatttgctcatttcacacatattaagaaaaatgtataaatgaaggagagagaaaaatggttttaagttcttttgttatgtattgctgcattctcca 2868641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 11251100 - 11251178
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| || ||| |||| || ||||||||||| |||||||||||||||||||| |||| || |||||||    
T  11251100 aaatgtataaatgaatgagagaaaaaaatgattttaagtgctcttgttaagtattggtgcattctccactatcataaat 11251178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 686 - 814
Target Start/End: Original strand, 17776911 - 17777045
Alignment:
Q  686 tactccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgcttt 779  Q
    |||| |||| |||| | ||| ||| ||||||||||||||||||||  ||||     ||||||||||||||| || |||| ||||| |||||| |||||||    
T  17776911 tacttcctccgtcccagattaactgagtcatttgctcatttcacacgtattaaaaaaaatgtataaatgaatgagagagaaaaatggttttaggtgcttt 17777010  T
Q  780 tgttaagtattggtgcattttccattagcataaat 814  Q
    | ||||||||| ||||||| |||| || |||||||    
T  17777011 ttttaagtatttgtgcattctccactaccataaat 17777045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 686 - 814
Target Start/End: Original strand, 19078212 - 19078346
Alignment:
Q  686 tactccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgcttt 779  Q
    |||| |||| |||| | ||| ||| ||||||||||||||||||||  ||||     ||||||||||||||| || |||| ||||| |||||| |||||||    
T  19078212 tacttcctccgtcccagattaactgagtcatttgctcatttcacacgtattaaaaaaaatgtataaatgaatgagagagaaaaatggttttaggtgcttt 19078311  T
Q  780 tgttaagtattggtgcattttccattagcataaat 814  Q
    | ||||||||| ||||||| |||| || |||||||    
T  19078312 ttttaagtatttgtgcattctccactaccataaat 19078346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 21296476 - 21296554
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| |||| ||| || |||||| |||| |||||||||||||||||||||| || || |||||||    
T  21296476 aaatgtataaatgaaggagagaggaaaatgattttaaatgctcttgttaagtattggtgcatttttcactatcataaat 21296554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 790
Target Start/End: Original strand, 26134676 - 26134730
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtatt 790  Q
    |||||||||||||||||| |||||||| |||||||||||||| ||||||||||||    
T  26134676 aaatgtataaatgaaggagagagaaaaattgttttaagtgctcttgttaagtatt 26134730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 33994791 - 33994713
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| |||||||| |  ||||||||||  |||||||||||||||||||| |||| || |||||||    
T  33994791 aaatgtataaatgaaggagagagaaaaataattttaagtgcacttgttaagtattggtgcattctccactatcataaat 33994713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 760 - 844
Target Start/End: Complemental strand, 48744369 - 48744288
Alignment:
Q  760 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattgaaaa 844  Q
    ||||| ||||||||||| |||||||||||||| |||||| |||| || |||||||    |||| |||||||||||||||||||||    
T  48744369 aaaatagttttaagtgcatttgttaagtattgatgcattctccactatcataaat---gtaaagtgaaatatattgaattgaaaa 48744288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 708 - 803
Target Start/End: Complemental strand, 10855162 - 10855061
Alignment:
Q  708 cttagtcatttgctcatttcacatttat-----taaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttc 801  Q
    |||||||||||| ||||||||||  |||     ||||||||||||||||||| |||| ||||| |||||||||| |||| ||| ||||||||||||| ||    
T  10855162 cttagtcatttgatcatttcacacgtattaagataaatgtataaatgaaggagagagaaaaatagttttaagtgtttttattatgtattggtgcattatc 10855063  T
Q  802 ca 803  Q
    ||    
T  10855062 ca 10855061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 737 - 803
Target Start/End: Original strand, 32023073 - 32023141
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt--gttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||||||||||||||||| | |||||| |  ||||||||| ||||||||||||||||||||||| ||||    
T  32023073 aaatgtataaatgaaggagatagaaaaataagttttaagtacttttgttaagtattggtgcattctcca 32023141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 737 - 839
Target Start/End: Original strand, 32827277 - 32827377
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||||||||| ||| |||| | |||||||||||  |||||| ||||||||||||| |||| || |||||||    |||| ||||||||||||    
T  32827277 aaatgtataaatgaaggagagaaaaaaatagttttaagtgcacttgttacgtattggtgcattctccactatcataaat---gtaaagtgaaatatattg 32827373  T
Q  836 aatt 839  Q
    ||||    
T  32827374 aatt 32827377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 760 - 840
Target Start/End: Complemental strand, 41031685 - 41031605
Alignment:
Q  760 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattg 840  Q
    ||||| |||||||||||  ||||||||||||||||||||||||| || |||||  |   |||| |||||||||||||||||    
T  41031685 aaaatagttttaagtgcacttgttaagtattggtgcattttccactatcataataaatgtaaagtgaaatatattgaattg 41031605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 796
Target Start/End: Original strand, 39365010 - 39365071
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaa--ttgttttaagtgcttttgttaagtattggtgca 796  Q
    |||||||||||| ||||| ||||||||  | |||||||||||| ||||||||||||||||||    
T  39365010 aaatgtataaataaaggagagagaaaaagtggttttaagtgctcttgttaagtattggtgca 39365071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 687 - 814
Target Start/End: Original strand, 14756032 - 14756165
Alignment:
Q  687 actccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgctttt 780  Q
    |||||||| |||||| ||| ||| |||||||||||||||| |||  ||||     |||||||||| | ||||| |||| |||||  ||||||||||| ||    
T  14756032 actccctctgtcctagattaactgagtcatttgctcattttacacatattaagaaaaatgtataattaaaggagagagaaaaataattttaagtgctctt 14756131  T
Q  781 gttaagtattggtgcattttccattagcataaat 814  Q
    |||||||| |||| |||| |||| || |||||||    
T  14756132 gttaagtactggtacattctccactatcataaat 14756165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 767 - 841
Target Start/End: Original strand, 54458313 - 54458384
Alignment:
Q  767 ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattga 841  Q
    ||||||||| ||||||||||||| |||||||| ||||||| |||||||    |||| || |||||||||||||||    
T  54458313 ttttaagtgattttgttaagtatgggtgcattctccattatcataaat---gtaaagtggaatatattgaattga 54458384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 741 - 803
Target Start/End: Original strand, 36097632 - 36097695
Alignment:
Q  741 gtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||||||||||||| |||||||| || |||||||| || ||||||||||| |||||||| ||||    
T  36097632 gtataaatgaaggagagagaaaaatggttttaagtactcttgttaagtatcggtgcattctcca 36097695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 798
Target Start/End: Complemental strand, 8706280 - 8706218
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 798  Q
    |||||||||||||||| | ||||| || || ||||||||||| ||||||||||||| ||||||    
T  8706280 aaatgtataaatgaagaagagagagaaatgattttaagtgctcttgttaagtattgatgcatt 8706218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 798
Target Start/End: Complemental strand, 9058167 - 9058105
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 798  Q
    |||||||||||||||| | ||||| || || ||||||||||| ||||||||||||| ||||||    
T  9058167 aaatgtataaatgaagaagagagagaaatgattttaagtgctcttgttaagtattgatgcatt 9058105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 798
Target Start/End: Complemental strand, 54783097 - 54783035
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcatt 798  Q
    ||||||||||||||| || |||||||| | |||||||||||  || |||||||||||||||||    
T  54783097 aaatgtataaatgaatgagagagaaaaatagttttaagtgcacttcttaagtattggtgcatt 54783035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 798
Target Start/End: Original strand, 55415412 - 55415474
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 798  Q
    |||||||||||| || || |||||||| || |||||| || ||||||||||||||||||||||    
T  55415412 aaatgtataaataaatgagagagaaaaatggttttaactgtttttgttaagtattggtgcatt 55415474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 737 - 793
Target Start/End: Original strand, 1772079 - 1772136
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggt 793  Q
    |||||||||||| ||||| |||||||| || ||||||||| | |||||||||||||||    
T  1772079 aaatgtataaataaaggagagagaaaaatggttttaagtgttcttgttaagtattggt 1772136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 1e-16; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 28572341 - 28572264
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||| ||||| |||||||||  ||||||||||| |||||||||||||||||||| |||| || |||||||    
T  28572341 aaatgtataaataaaggagagagaaaatgattttaagtgctcttgttaagtattggtgcattctccactatcataaat 28572264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 737 - 841
Target Start/End: Complemental strand, 23685093 - 23684991
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||| ||||| |||||||||| |||||||||| |||||||||||||| ||||||| |||| || |||||||     ||| ||||||||||||    
T  23685093 aaatgtataaataaaggagagagaaaattagttttaagtgtttttgttaagtattagtgcattctccactatcataaat---gcaaagtgaaatatattg 23684997  T
Q  836 aattga 841  Q
    ||||||    
T  23684996 aattga 23684991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 737 - 840
Target Start/End: Original strand, 30757541 - 30757642
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||||||||| |||||||| | |||||||||||  ||||||||||||  ||||||||||| || |||||||    ||||||| |||||||||    
T  30757541 aaatgtataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattaatgcattttccactatcataaat---gtaaattggaatatattg 30757637  T
Q  836 aattg 840  Q
    |||||    
T  30757638 aattg 30757642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 737 - 841
Target Start/End: Complemental strand, 28301568 - 28301466
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||  ||| |||| || |||||||     ||| ||||||||||||    
T  28301568 aaatgtataaatgaaggaaagagaaaaatggttttaagtgctcttgttaagtattggtctattctccactatcataaat---gcaaagtgaaatatattg 28301472  T
Q  836 aattga 841  Q
    ||||||    
T  28301471 aattga 28301466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 2882119 - 2882041
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| || | |||||| || ||||||||||| |||||||||||||||||||| |||| || |||||||    
T  2882119 aaatgtataaatgaaagagatagaaaaatgattttaagtgctcttgttaagtattggtgcattctccactatcataaat 2882041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 844
Target Start/End: Original strand, 24775781 - 24775886
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||||||||| |||||||| |  ||||||||||  |||||||||||||||| ||| |||| || |||||||    |||| ||||||||||||    
T  24775781 aaatgtataaatgaaggagagagaaaaataattttaagtgcacttgttaagtattggtgtattctccactatcataaat---gtaaagtgaaatatattg 24775877  T
Q  836 aattgaaaa 844  Q
    |||| ||||    
T  24775878 aattaaaaa 24775886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 711 - 814
Target Start/End: Original strand, 43950390 - 43950499
Alignment:
Q  711 agtcatttgctcatttcacatttattaaa-----tgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccat 804  Q
    |||||||| ||||||||||| ||||||||     ||||||| |||| || |||||||| | ||||||| || ||||||||||||||| || |||||||||    
T  43950390 agtcatttactcatttcacacttattaaaaaaaatgtataagtgaaagagagagaaaaatagttttaaatgtttttgttaagtattgatgtattttccat 43950489  T
Q  805 tagcataaat 814  Q
    || |||||||    
T  43950490 taacataaat 43950499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 684 - 798
Target Start/End: Complemental strand, 28527156 - 28527036
Alignment:
Q  684 aatactccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaagga-tagagaaaattgttttaagtgct 777  Q
    |||||||| || ||||  |||| ||| ||||||||||||||||||||  ||||     ||||||||||||||||||  | | ||||| ||||||||||||    
T  28527156 aatactccatccgtcccgaattaactgagtcatttgctcatttcacacatattaagaaaaatgtataaatgaaggagaaaaaaaaatggttttaagtgct 28527057  T
Q  778 tttgttaagtattggtgcatt 798  Q
     |||||||||||| |||||||    
T  28527056 cttgttaagtattcgtgcatt 28527036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 737 - 803
Target Start/End: Original strand, 15859318 - 15859385
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||| ||||||||||||| |||||||| | ||||||||| ||||||||||||||||| ||||| ||||    
T  15859318 aaatatataaatgaaggagagagaaaaatagttttaagtacttttgttaagtattggggcattctcca 15859385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 737 - 803
Target Start/End: Complemental strand, 36155647 - 36155580
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||||||||||||||||| ||| |||| || ||||||||||| |||||||||||||||| ||| ||||    
T  36155647 aaatgtataaatgaaggagagaaaaaaatgattttaagtgctcttgttaagtattggtgtattctcca 36155580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 737 - 791
Target Start/End: Complemental strand, 40965148 - 40965093
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattg 791  Q
    |||||||||||||||||| |||||||| | ||||||||||| ||||||||||||||    
T  40965148 aaatgtataaatgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 40965093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 565223 - 565145
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||| |||||||| | |||||| || ||||||||| | |||||||||||||||||||| |||| || |||||||    
T  565223 aaatgtatatatgaaggagaaagaaaaatgattttaagtgttcttgttaagtattggtgcattctccactatcataaat 565145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 2756808 - 2756730
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||| ||||||| | |||||||| || ||||||||||| |||| ||||||| |||||||| |||||| |||||||    
T  2756808 aaatgtattaatgaagaagagagaaaaattattttaagtgctcttgtcaagtattagtgcatttaccattatcataaat 2756730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 3100534 - 3100456
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||| ||||||||||||| |||||||| || ||||||||| | ||||||||||||| |||||| |||| || |||||||    
T  3100534 aaatatataaatgaaggagagagaaaaatgattttaagtgatcttgttaagtattgctgcattctccactatcataaat 3100456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 760 - 814
Target Start/End: Original strand, 18181210 - 18181264
Alignment:
Q  760 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||| || |||||||    
T  18181210 aaaatggttttaagtgcttttgttatgtattggtgcattctccactatcataaat 18181264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 742 - 803
Target Start/End: Original strand, 28108353 - 28108415
Alignment:
Q  742 tataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    ||||||||||||| |||||||| | |||||||||||  |||||||||||||||||||| ||||    
T  28108353 tataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattggtgcattctcca 28108415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 840
Target Start/End: Original strand, 28925821 - 28925922
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||| ||||| |||||||| | |||||||||||  ||||||||||||| |||||| |||| || ||||   ||  |||| ||||||||||||    
T  28925821 aaatgtataaataaaggagagagaaaaatagttttaagtgcacttgttaagtattgatgcattctccactatcata---attgtaaagtgaaatatattg 28925917  T
Q  836 aattg 840  Q
    |||||    
T  28925918 aattg 28925922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 844
Target Start/End: Original strand, 43077699 - 43077804
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    ||||||||||||||| || |||||||| | ||||||| ||   ||||||| ||||||||||||||||| |  ||||||| |||   | ||||||||||||    
T  43077699 aaatgtataaatgaatgagagagaaaaatagttttaaatgtacttgttaactattggtgcattttccactgtcataaatgtaa---agtgaaatatattg 43077795  T
Q  836 aattgaaaa 844  Q
    |||||||||    
T  43077796 aattgaaaa 43077804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 7649949 - 7650026
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| || | ||| | ||||||||||| |||||||||| || |||||| |||| || |||||||    
T  7649949 aaatgtataaatgaaggagagcgcaaaatattttaagtgctcttgttaagtactgatgcattctccactatcataaat 7650026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 737 - 793
Target Start/End: Complemental strand, 33755391 - 33755334
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggt 793  Q
    |||||||||||||||||| |||||||| || ||||||||| | |||||||||||||||    
T  33755391 aaatgtataaatgaaggagagagaaaaatgattttaagtgttattgttaagtattggt 33755334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 13375161 - 13375240
Alignment:
Q  737 aaatgtataaatgaaggatagaga-aaattgttttaagtgcttttgttaa-gtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| ||||| ||||  ||||||||||  ||||||| ||||||||||||| |||| || |||||||    
T  13375161 aaatgtataaatgaaggagagagataaataattttaagtgcagttgttaaggtattggtgcattctccactatcataaat 13375240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 737 - 841
Target Start/End: Original strand, 37247857 - 37247959
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    ||||||||||| |||||| ||| |||| | |||||||||||| |||||||||||||||  ||| |||| || |||||||     ||| ||||||||||||    
T  37247857 aaatgtataaaagaaggaaagaaaaaaatagttttaagtgctcttgttaagtattggtctattctccactatcataaat---gcaaagtgaaatatattg 37247953  T
Q  836 aattga 841  Q
    ||||||    
T  37247954 aattga 37247959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 798
Target Start/End: Original strand, 5211931 - 5211993
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcatt 798  Q
    |||||||||||||||| | || ||||| | |||||||||||| |||||||||||| |||||||    
T  5211931 aaatgtataaatgaagaagagggaaaaatagttttaagtgctcttgttaagtatttgtgcatt 5211993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 818
Target Start/End: Original strand, 36103274 - 36103356
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataa 818  Q
    ||||||| |||||||||| |||||||| || ||||||||| | ||||||||||| | |||||| |||| || ||| |||||||    
T  36103274 aaatgtacaaatgaaggagagagaaaaatgattttaagtgttcttgttaagtatcgatgcattctccactatcatgaatataa 36103356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 791
Target Start/End: Complemental strand, 41436212 - 41436158
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattg 791  Q
    |||||||||||||||  | |||||||||  ||||||||| |||||||||||||||    
T  41436212 aaatgtataaatgaattagagagaaaataattttaagtgtttttgttaagtattg 41436158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 44534456 - 44534534
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| ||| |||| || |||||| || | ||||||||||||||| |||| |||| || |||||||    
T  44534456 aaatgtataaatgaaggacagaaaaaaatgattttaaatgttcttgttaagtattggtacattctccactatcataaat 44534534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 739 - 841
Target Start/End: Original strand, 435053 - 435153
Alignment:
Q  739 atgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaa 837  Q
    ||||||||||||| || ||| |||| | |||||||||||  ||||||| |||| ||||||| |||| || |||||||    |||| ||||||||||||||    
T  435053 atgtataaatgaaagagagacaaaaatagttttaagtgcacttgttaaatattagtgcattctccactatcataaat---gtaaagtgaaatatattgaa 435149  T
Q  838 ttga 841  Q
    ||||    
T  435150 ttga 435153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 850 - 923
Target Start/End: Original strand, 5007686 - 5007759
Alignment:
Q  850 aatggataagttattttaaaacaataattttttacaaaatgatcatttattaaaggacggaatgagtagcaaat 923  Q
    |||||||  |||||||||  | |||| |||||||||||||||||| |||||| ||||||||  ||||| |||||    
T  5007686 aatggatcggttattttaggataatatttttttacaaaatgatcacttattataggacggagggagtaacaaat 5007759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 4e-16; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 744 - 841
Target Start/End: Complemental strand, 17342955 - 17342860
Alignment:
Q  744 taaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattgaattga 841  Q
    ||||||||||| || ||||| || ||||||||| |||||||||||||||||||||| ||||||| |||||||   | ||| ||||||||||||||||||    
T  17342955 taaatgaaggagagggaaaaatggttttaagtgtttttgttaagtattggtgcattctccattatcataaat---acaaagtgaaatatattgaattga 17342860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 737 - 841
Target Start/End: Complemental strand, 32587899 - 32587797
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||||||||  |||||||| |  ||||||||| ||||||||||||||| |||||||||||||| |||||||     ||| ||||||||||||    
T  32587899 aaatgtataaatgaaggtgagagaaaaataattttaagtgtttttgttaagtattgatgcattttccattatcataaat---gcaaagtgaaatatattg 32587803  T
Q  836 aattga 841  Q
    ||||||    
T  32587802 aattga 32587797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 737 - 840
Target Start/End: Original strand, 50267412 - 50267513
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    ||||||||||||||| |  |||||||| | |||||||||||  |||||||||||||||||||| ||||||| |||||||    |||| ||||||||||||    
T  50267412 aaatgtataaatgaaagtgagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccattatcataaat---gtaaagtgaaatatattg 50267508  T
Q  836 aattg 840  Q
    |||||    
T  50267509 aattg 50267513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 52830388 - 52830466
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| |||||||| |  |||| ||||| |||||||||||||||||||||||||| || |||||||    
T  52830388 aaatgtataaatgaaggagagagaaaaataattttgagtgcatttgttaagtattggtgcattttccactatcataaat 52830466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 738 - 844
Target Start/End: Complemental strand, 26756109 - 26756005
Alignment:
Q  738 aatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattga 836  Q
    |||||||||||||| || |||| ||||| |||||||||||  ||||||||||||| |||||| |||| || |||||||   ||||| || ||||||||||    
T  26756109 aatgtataaatgaatgagagaggaaaatagttttaagtgcacttgttaagtattgatgcattctccactatcataaat---ataaagtgtaatatattga 26756013  T
Q  837 attgaaaa 844  Q
    ||||||||    
T  26756012 attgaaaa 26756005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 737 - 844
Target Start/End: Original strand, 28277009 - 28277117
Alignment:
Q  737 aaatgtataaatgaaggatag----agaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatata 832  Q
    |||||||||||||||||| ||    | ||||| |||||||||||  |||||||||||||||||||| |||| || |||||||    |||| |||||||||    
T  28277009 aaatgtataaatgaaggagagaaaaaaaaaatagttttaagtgcacttgttaagtattggtgcattctccagtatcataaat---gtaaagtgaaatata 28277105  T
Q  833 ttgaattgaaaa 844  Q
    ||||||||||||    
T  28277106 ttgaattgaaaa 28277117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 737 - 803
Target Start/End: Complemental strand, 32348352 - 32348285
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||||||||||||||||| |||||||| || ||||||||||| |||||||||||||||  ||||||||    
T  32348352 aaatgtataaatgaaggagagagaaaaatggttttaagtgctcttgttaagtattggtctattttcca 32348285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 685 - 798
Target Start/End: Complemental strand, 49945123 - 49945004
Alignment:
Q  685 atactccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgctt 778  Q
    |||||| ||| |||||  ||| ||| ||||||||||||||||||||  ||||     |||||||||||||||| | |||| ||||| ||||||||||||     
T  49945123 atactctctctgtcctggattaactaagtcatttgctcatttcacacatattaagaaaaatgtataaatgaagaagagagaaaaatggttttaagtgctc 49945024  T
Q  779 ttgttaagtattggtgcatt 798  Q
    |||||||||||| |||||||    
T  49945023 ttgttaagtatttgtgcatt 49945004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 736 - 814
Target Start/End: Original strand, 51749156 - 51749235
Alignment:
Q  736 taaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||||||| |||||||| || ||||||||| | |||||||||||||||  ||| ||||||| |||||||    
T  51749156 taaatgtataaatgaaggagagagaaaactgattttaagtgttcttgttaagtattggtttattctccattatcataaat 51749235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 3555529 - 3555607
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||  ||| |||| || |||||||    
T  3555529 aaatgtataaatgaaggatagggaaaaatggttttaagtgctttttttaagtattggtctattctccactatcataaat 3555607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 42926268 - 42926190
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| || |||||||| || ||||||||| ||||||||||||| |||||||| |||| || |||||||    
T  42926268 aaatgtataaatgaatgaaagagaaaaatgattttaagtgtttttgttaagtatcggtgcattctccactatcataaat 42926190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 737 - 818
Target Start/End: Original strand, 21304781 - 21304862
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataa 818  Q
    ||||||||||||||| || ||| ||||||||||| ||||  ||||| |||||||| |||||||| | ||| |||||||||||    
T  21304781 aaatgtataaatgaaagagagataaaattgttttgagtgtctttgtcaagtattgatgcatttttctttatcataaatataa 21304862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 841 - 888
Target Start/End: Original strand, 13500862 - 13500909
Alignment:
Q  841 aaaaagtgaaatggataagttattttaaaacaataattttttacaaaa 888  Q
    |||||||||||||||||||||||||||  |||||| ||||||||||||    
T  13500862 aaaaagtgaaatggataagttattttaggacaatatttttttacaaaa 13500909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 737 - 837
Target Start/End: Original strand, 19532893 - 19532991
Alignment:
Q  737 aaatgtataaatgaaggatagag-aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||| |||||||||||||||||| ||||| ||||||||||   ||||||||||||||| |||| |||| || |||||||    |||| ||||||||||||    
T  19532893 aaatatataaatgaaggatagagaaaaatagttttaagtgtacttgttaagtattggttcattctccactatcataaat---gtaaagtgaaatatattg 19532989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 697 - 814
Target Start/End: Complemental strand, 27391526 - 27391403
Alignment:
Q  697 tcctaaattcacttagtcatttgctcatttcacatttatta-----aatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtatt 790  Q
    ||||||||| | | ||||||||| ||| |||||| ||||||     ||||||||| ||||||| |||||||| || ||||||||||| || |||||||||    
T  27391526 tcctaaattaagtgagtcatttgttcaattcacacttattacgaaaaatgtataagtgaaggagagagaaaaatgattttaagtgctcttattaagtatt 27391427  T
Q  791 ggtgcattttccattagcataaat 814  Q
    ||| ||||| | |||| |||||||    
T  27391426 ggttcatttactattatcataaat 27391403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 686 - 815
Target Start/End: Complemental strand, 46536530 - 46536395
Alignment:
Q  686 tactccctcagtcctaaattcacttagtcatttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaattg-ttttaagtgcttt 779  Q
    ||||||||| ||||  |||| ||| |||||||||||| |||||||| ||||||     || |||| |||||||| |||||||| || ||||||||||| |    
T  46536530 tactccctccgtcccgaattaactgagtcatttgctcgtttcacatgtattaagaaaaatttatagatgaaggaaagagaaaaatggttttaagtgctct 46536431  T
Q  780 tgttaagtattggtgcattttccattagcataaata 815  Q
    |||||| ||||| || ||| |||| || ||||||||    
T  46536430 tgttaaatattgttgtattctccactatcataaata 46536395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 17724688 - 17724766
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||  ||||||||| |||||||| |||||||||||||| ||||||| ||||| |||||| |||| || |||||||    
T  17724688 aaatgtaataatgaaggagagagaaaaattgttttaagtgctcttgttaattattgatgcattctccactaccataaat 17724766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 28839473 - 28839395
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| |||||||| | ||||||| |||| |||||||||||||||  ||| |||| || |||||||    
T  28839473 aaatgtataaatgaaggagagagaaaaatagttttaaatgctcttgttaagtattggtctattctccactatcataaat 28839395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 840
Target Start/End: Original strand, 36467169 - 36467270
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    ||||||||||||||| || |||||||| | |||||||||||  |||||||||||||||| ||| |||| ||  ||||||    |||| ||||||||||||    
T  36467169 aaatgtataaatgaatgagagagaaaaatagttttaagtgcacttgttaagtattggtggattctccactatgataaat---gtaaagtgaaatatattg 36467265  T
Q  836 aattg 840  Q
    |||||    
T  36467266 aattg 36467270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 798
Target Start/End: Complemental strand, 52432446 - 52432384
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 798  Q
    |||||||||||||||| | |||||||| || ||||||||||| ||||||||||||| ||||||    
T  52432446 aaatgtataaatgaagaagagagaaaaatgattttaagtgctcttgttaagtattgatgcatt 52432384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 737 - 798
Target Start/End: Complemental strand, 2571495 - 2571435
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcatt 798  Q
    ||||||||||||||| || ||||||||| ||||| |||| | ||||||||||||||||||||    
T  2571495 aaatgtataaatgaaagagagagaaaatagttttgagtg-tcttgttaagtattggtgcatt 2571435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 737 - 794
Target Start/End: Complemental strand, 43895980 - 43895923
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtg 794  Q
    ||||||||| ||||| || ||||||||| |||||| ||| ||||||||||||||||||    
T  43895980 aaatgtatagatgaaagagagagaaaatagttttatgtgtttttgttaagtattggtg 43895923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 737 - 790
Target Start/End: Original strand, 10370158 - 10370213
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaa--ttgttttaagtgcttttgttaagtatt 790  Q
    |||||||||||| ||||| ||||||||  | |||||||||||||||||||||||||    
T  10370158 aaatgtataaataaaggagagagaaaaaatagttttaagtgcttttgttaagtatt 10370213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 716 - 814
Target Start/End: Complemental strand, 34814077 - 34813973
Alignment:
Q  716 tttgctcatttcacatttattaa-----atgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagca 809  Q
    ||||||||||||||| |||||||     |||||| | ||||||| |||||||| | |||||||||| | |||||||||||| ||||||||  ||||| ||    
T  34814077 tttgctcatttcacacttattaagaaaaatgtattagtgaaggagagagaaaaatagttttaagtgttcttgttaagtattagtgcatttatcattatca 34813978  T
Q  810 taaat 814  Q
    |||||    
T  34813977 taaat 34813973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 760 - 803
Target Start/End: Complemental strand, 8773352 - 8773309
Alignment:
Q  760 aaaattgttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    ||||| |||||||||||| |||||||||||||||||||| ||||    
T  8773352 aaaatagttttaagtgctcttgttaagtattggtgcattctcca 8773309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 45889221 - 45889300
Alignment:
Q  737 aaatgtataaatgaa-ggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| ||| |||||||| || ||||||||||| ||||||| |||||||  ||| ||||||| |||||||    
T  45889221 aaatgtataaatgaaaggagagagaaaaatggttttaagtgctcttgttaactattggtctattctccattatcataaat 45889300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 5040549 - 5040627
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| || |||||||| || ||||| ||| | ||||||||||||| |||||| |||| || |||||||    
T  5040549 aaatgtataaatgaatgagagagaaaaatggttttaggtgatcttgttaagtattgatgcattctccactatcataaat 5040627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 5442474 - 5442396
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| || |||||||| || ||||||||  | |||||||||||| ||||||| |||| || |||||||    
T  5442474 aaatgtataaatgaatgagagagaaaaatggttttaagttatcttgttaagtattagtgcattctccactatcataaat 5442396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 760 - 814
Target Start/End: Original strand, 34877088 - 34877142
Alignment:
Q  760 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| | ||||| |||| |||||||||| |||| |||||||    
T  34877088 aaaattgttttaagtgctctggttaaatattcgtgcattttctattatcataaat 34877142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 737 - 793
Target Start/End: Complemental strand, 8327851 - 8327794
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggt 793  Q
    ||||||||||||||| || |||||||| |  ||||||||||| |||||||||||||||    
T  8327851 aaatgtataaatgaatgagagagaaaaataattttaagtgctcttgttaagtattggt 8327794  T

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Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 761 - 818
Target Start/End: Original strand, 40019059 - 40019116
Alignment:
Q  761 aaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataa 818  Q
    |||||||||||| |  ||||||||| |||||||||||||  ||||| |||||||||||    
T  40019059 aaattgttttaaatctttttgttaaatattggtgcatttaacattatcataaatataa 40019116  T

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Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 737 - 813
Target Start/End: Complemental strand, 40019893 - 40019816
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaa 813  Q
    |||||||||| |||| || |||||||| |||||||||||||| |||| ||||||| ||| |||  |||||| ||||||    
T  40019893 aaatgtataagtgaatgagagagaaaaattgttttaagtgctcttgtcaagtatttgtgtattcaccattatcataaa 40019816  T

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Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 737 - 815
Target Start/End: Original strand, 11099451 - 11099530
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaata 815  Q
    ||||||||||||||| || |||||||| | |||||||||| |||||||||||||||||||||| |||| || ||||||||    
T  11099451 aaatgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtattggtgcattctccactatcataaata 11099530  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 3725320 - 3725242
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||| |||||| |||||||| || ||||||||||| |||||||||||||||||||| |||| || |||||||    
T  3725320 aaatgtataaaggaaggagagagaaaaatggttttaagtgctattgttaagtattggtgcattctccactatcataaat 3725242  T

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Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 737 - 840
Target Start/End: Complemental strand, 7613841 - 7613740
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||||||| ||||| |||||||| | |||||||||||  |||||||||||||||||||| |||| || |||||||    |||| ||||||||||||    
T  7613841 aaatgtataaattaaggaaagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccactatcataaat---gtaaagtgaaatatattg 7613745  T
Q  836 aattg 840  Q
    |||||    
T  7613744 aattg 7613740  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 737 - 803
Target Start/End: Complemental strand, 39008266 - 39008199
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    |||||||||||||||||| |||||||| || ||||||||||| ||||||||||||||| |||| ||||    
T  39008266 aaatgtataaatgaaggagagagaaaaatggttttaagtgctcttgttaagtattggttcattctcca 39008199  T

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Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 711 - 803
Target Start/End: Complemental strand, 15814807 - 15814709
Alignment:
Q  711 agtcatttgctcatttcacatttattaaa-----tgtataaatgaaggatagagaaaa-ttgttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    ||||||||||| ||||||||| |||||||     ||||||||||||||| |||||||| || ||||||| ||| |||||||||||| ||| ||||||||    
T  15814807 agtcatttgcttatttcacatatattaaaaaaaatgtataaatgaaggagagagaaaaattattttaagcgctcttgttaagtatttgtgtattttcca 15814709  T

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Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 840
Target Start/End: Complemental strand, 25814498 - 25814397
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    ||||| |||||||||||| |||||||| | |||||||||||  ||||||||||||||| |||| |||| || |||||||    |||| ||||||||||||    
T  25814498 aaatgcataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattggtacattatccactatcataaat---gtaaagtgaaatatattg 25814402  T
Q  836 aattg 840  Q
    |||||    
T  25814401 aattg 25814397  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 737 - 814
Target Start/End: Complemental strand, 33988334 - 33988256
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| | |||||| || ||||||||| |||||||||||||||||| ||| |||| || |||||||    
T  33988334 aaatgtataaatgaaggagaaagaaaaatggttttaagtgtttttgttaagtattggtgtattctccactatcataaat 33988256  T

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Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 737 - 839
Target Start/End: Complemental strand, 6610971 - 6610871
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgt-tttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatattg 835  Q
    |||||||| ||||||||| |||||||| ||  |||||||| |||| ||||||||||||||||| |||| || |||||||    |||| ||||||||||||    
T  6610971 aaatgtatcaatgaaggagagagaaaaatgagtttaagtgtttttattaagtattggtgcattctccactatcataaat---gtaaagtgaaatatattg 6610875  T
Q  836 aatt 839  Q
    ||||    
T  6610874 aatt 6610871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 720 - 815
Target Start/End: Complemental strand, 35667039 - 35666940
Alignment:
Q  720 ctcatttcacatttattaa-----atgtataaatgaaggatagagaaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||||     || ||| | ||||||| ||| ||||| ||||||||||||||| |||||||||||||||||| ||||||  ||||||    
T  35667039 ctcatttcacatttattaagaaaaatttattattgaaggagaga-aaaatagttttaagtgcttttcttaagtattggtgcatttaccattattataaat 35666941  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 760 - 814
Target Start/End: Original strand, 8369694 - 8369748
Alignment:
Q  760 aaaattgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||| |||| |||||||||||||||||||| |||| || |||||||    
T  8369694 aaaattgttttaaatgctcttgttaagtattggtgcattctccactatcataaat 8369748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 8692792 - 8692870
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||| |||||||||||||  ||||||| || ||||||||| | |||||||||||||||||||| |||| || |||||||    
T  8692792 aaatatataaatgaaggagggagaaaaatggttttaagtgttcttgttaagtattggtgcattctccactatcataaat 8692870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 35646063 - 35646141
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||| |||||||||| || |||||||| || ||||||||| | |||||||||||||||||||| |||| || |||||||    
T  35646063 aaatatataaatgaatgagagagaaaaatgattttaagtgatcttgttaagtattggtgcattctccactatcataaat 35646141  T

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Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 798
Target Start/End: Complemental strand, 41184794 - 41184732
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaatt-gttttaagtgcttttgttaagtattggtgcatt 798  Q
    |||||||||||||||||| | |||||| | |||||||||||  ||||||||||||||||||||    
T  41184794 aaatgtataaatgaaggagaaagaaaaatagttttaagtgcacttgttaagtattggtgcatt 41184732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 685 - 789
Target Start/End: Complemental strand, 42211520 - 42211410
Alignment:
Q  685 atactccctcagtcctaaattcacttagtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatagag-aaaattgttttaagtgctt 778  Q
    |||||||||| |||| ||||| ||  ||||||||||||||||||||  ||||     |||||||||||||||||   ||| ||||| ||||||||||||     
T  42211520 atactccctctgtcccaaattaaccgagtcatttgctcatttcacacatattaaaaaaaatgtataaatgaaggtgggagaaaaatggttttaagtgctc 42211421  T
Q  779 ttgttaagtat 789  Q
    |||||||||||    
T  42211420 ttgttaagtat 42211410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 42575612 - 42575690
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    ||||||||||||||| || |||||||| || ||||||||||| ||| |||||||||||| ||| |||| || |||||||    
T  42575612 aaatgtataaatgaatgagagagaaaaatggttttaagtgctcttggtaagtattggtgtattctccactatcataaat 42575690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 841 - 917
Target Start/End: Complemental strand, 12678345 - 12678268
Alignment:
Q  841 aaaaagtgaaatggataagttattttaaaacaata-attttttacaaaatgatcatttattaaaggacggaatgagta 917  Q
    |||||||||||| ||| ||||||||||  |||||| |||||| ||||||  |||| ||||||||||||||| ||||||    
T  12678345 aaaaagtgaaatagatcagttattttaggacaatatatttttaacaaaacaatcacttattaaaggacggattgagta 12678268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 737 - 841
Target Start/End: Complemental strand, 20190027 - 20189924
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaa--ttgttttaagtgcttttgttaagtattggtgcattttccattagcataaatataataaattgaaatatatt 834  Q
    ||||| |||||||||||| ||| ||||  | ||||||||||| ||||||||||| || |||||| ||||||| |||||||    |||| || ||||||||    
T  20190027 aaatgcataaatgaaggagagataaaaaatagttttaagtgcatttgttaagtactgatgcattctccattatcataaat---gtaaagtggaatatatt 20189931  T
Q  835 gaattga 841  Q
    |||||||    
T  20189930 gaattga 20189924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 736 - 814
Target Start/End: Complemental strand, 32539797 - 32539718
Alignment:
Q  736 taaatgtataaatgaaggatagagaaa-attgttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||| ||||| |||||| ||| ||| || ||||||||||||||| ||| ||||||||||||| |||| || |||||||    
T  32539797 taaatgaataaacgaaggagagacaaagatggttttaagtgcttttattatgtattggtgcattctccactatcataaat 32539718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 798
Target Start/End: Original strand, 16283561 - 16283623
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcatt 798  Q
    |||||||||||||||||| ||| |||| || |||||| || |||||||| |||||||||||||    
T  16283561 aaatgtataaatgaaggagagaaaaaaatggttttaaatgattttgttatgtattggtgcatt 16283623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 737 - 814
Target Start/End: Original strand, 36469068 - 36469146
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattgttt-taagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||||||| | | |||| || || |||||| |||||||| ||||||||||||| |||| || |||||||    
T  36469068 aaatgtataaatgaaggagataaaaaaatgattataagtgtttttgttatgtattggtgcattctccactatcataaat 36469146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 711 - 814
Target Start/End: Complemental strand, 858500 - 858391
Alignment:
Q  711 agtcatttgctcatttcacatttatt-----aaatgtataaatgaaggatag-agaaaattgttttaagtgcttttgttaagtattggtgcattttccat 804  Q
    ||||||||||||||||||||  ||||     |||||||||||| ||||| || | ||||| |||||||||  | ||||||| ||||||| |||| |||||    
T  858500 agtcatttgctcatttcacacatattaagaaaaatgtataaataaaggagagaaaaaaatggttttaagttatcttgttaaatattggtacattctccat 858401  T
Q  805 tagcataaat 814  Q
    || |||||||    
T  858400 tatcataaat 858391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 737 - 803
Target Start/End: Complemental strand, 98959 - 98892
Alignment:
Q  737 aaatgtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttcca 803  Q
    ||||||||||||||| || |||||||| || ||||||||||| ||| |||||||||||||||| ||||    
T  98959 aaatgtataaatgaatgagagagaaaaatgattttaagtgctcttgataagtattggtgcattatcca 98892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 741 - 814
Target Start/End: Original strand, 9529 - 9603
Alignment:
Q  741 gtataaatgaaggatagagaaaattg-ttttaagtgcttttgttaagtattggtgcattttccattagcataaat 814  Q
    |||||||||||||| |||||||| || ||||||||||| ||||||||||||  || ||| ||||||| |||||||    
T  9529 gtataaatgaaggagagagaaaaatggttttaagtgctcttgttaagtattaatgtattctccattatcataaat 9603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 850 - 923
Target Start/End: Complemental strand, 3992 - 3919
Alignment:
Q  850 aatggataagttattttaaaacaataattttttacaaaatgatcatttattaaaggacggaatgagtagcaaat 923  Q
    |||||||  |||||||||  | |||| |||||||||||||||||| |||||| ||||||||  ||||| |||||    
T  3992 aatggatcggttattttaggataatatttttttacaaaatgatcacttattataggacggagggagtaacaaat 3919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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