View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9600_2 (Length: 1074)

Name: NF9600_2
Description: NF9600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9600_2
NF9600_2
[»] chr3 (72 HSPs)
chr3 (1-1053)||(3753723-3754775)
chr3 (363-1053)||(4142016-4142709)
chr3 (363-1053)||(4157823-4158519)
chr3 (59-315)||(4142736-4142992)
chr3 (59-315)||(4158546-4158802)
chr3 (736-944)||(3745866-3746074)
chr3 (62-180)||(3745168-3745286)
chr3 (746-943)||(2678385-2678582)
chr3 (748-942)||(2686299-2686496)
chr3 (835-934)||(803213-803312)
chr3 (832-956)||(989350-989474)
chr3 (878-949)||(2456249-2456320)
chr3 (836-942)||(968629-968735)
chr3 (840-937)||(1007423-1007520)
chr3 (840-937)||(1022451-1022548)
chr3 (835-934)||(2696727-2696826)
chr3 (54-159)||(967861-967966)
chr3 (868-925)||(997566-997623)
chr3 (868-925)||(1013956-1014013)
chr3 (877-946)||(1931137-1931206)
chr3 (878-927)||(13498224-13498273)
chr3 (54-174)||(2679178-2679298)
chr3 (881-953)||(9587161-9587233)
chr3 (840-955)||(956343-956458)
chr3 (836-927)||(2459233-2459324)
chr3 (876-927)||(9608346-9608397)
chr3 (837-927)||(1891066-1891156)
chr3 (485-547)||(2441622-2441684)
chr3 (878-940)||(2644351-2644413)
chr3 (878-940)||(2659141-2659203)
chr3 (878-927)||(771501-771550)
chr3 (836-937)||(1936972-1937073)
chr3 (877-946)||(1940562-1940631)
chr3 (878-934)||(2442039-2442095)
chr3 (879-927)||(2631358-2631406)
chr3 (878-953)||(7334215-7334290)
chr3 (62-184)||(2651142-2651264)
chr3 (877-943)||(7432040-7432106)
chr3 (490-551)||(3745614-3745675)
chr3 (878-927)||(7324433-7324482)
chr3 (878-927)||(37753347-37753396)
chr3 (878-927)||(43991960-43992009)
chr3 (878-946)||(2476634-2476702)
chr3 (878-946)||(7942485-7942553)
chr3 (878-953)||(783775-783850)
chr3 (878-940)||(2502148-2502210)
chr3 (56-174)||(2687085-2687203)
chr3 (878-932)||(12133097-12133151)
chr3 (888-938)||(44001605-44001655)
chr3 (878-927)||(754611-754660)
chr3 (886-927)||(1438003-1438044)
chr3 (878-927)||(9561987-9562036)
chr3 (880-945)||(23197014-23197079)
chr3 (78-166)||(803972-804060)
chr3 (879-927)||(2492083-2492131)
chr3 (884-927)||(7427607-7427650)
chr3 (493-544)||(12132703-12132754)
chr3 (884-927)||(12218033-12218076)
chr3 (85-159)||(1003714-1003788)
chr3 (85-159)||(1021711-1021785)
chr3 (53-159)||(1937720-1937826)
chr3 (495-549)||(2686698-2686752)
chr3 (366-432)||(3745484-3745550)
chr3 (884-946)||(13479584-13479646)
chr3 (890-927)||(746385-746422)
chr3 (839-933)||(899967-900063)
chr3 (738-787)||(2441875-2441924)
chr3 (597-642)||(2686599-2686644)
chr3 (878-927)||(7430538-7430587)
chr3 (879-924)||(7442982-7443027)
chr3 (878-927)||(9565831-9565880)
chr3 (888-921)||(37757744-37757777)
[»] chr5 (20 HSPs)
chr5 (623-1053)||(11081555-11081988)
chr5 (62-230)||(11081379-11081547)
chr5 (868-937)||(23766854-23766923)
chr5 (868-937)||(23816702-23816771)
chr5 (877-946)||(23769629-23769698)
chr5 (877-946)||(23819477-23819546)
chr5 (744-943)||(1427679-1427878)
chr5 (878-927)||(20292995-20293044)
chr5 (877-941)||(23732166-23732230)
chr5 (877-927)||(3181716-3181766)
chr5 (878-927)||(20301443-20301492)
chr5 (878-927)||(20305856-20305905)
chr5 (878-927)||(20310260-20310309)
chr5 (877-946)||(23861009-23861078)
chr5 (877-925)||(41973474-41973522)
chr5 (491-545)||(2067457-2067511)
chr5 (877-946)||(23764243-23764312)
chr5 (877-946)||(23814076-23814145)
chr5 (739-790)||(2067209-2067260)
chr5 (878-927)||(6401768-6401817)
[»] scaffold0044 (1 HSPs)
scaffold0044 (876-946)||(89141-89211)
[»] chr7 (6 HSPs)
chr7 (876-946)||(39298975-39299045)
chr7 (878-955)||(1078134-1078211)
chr7 (738-880)||(1078227-1078369)
chr7 (877-927)||(1421171-1421221)
chr7 (493-547)||(1078566-1078620)
chr7 (882-927)||(3927063-3927108)
[»] chr4 (7 HSPs)
chr4 (868-946)||(22672110-22672188)
chr4 (868-955)||(20019746-20019833)
chr4 (497-547)||(20020151-20020201)
chr4 (878-927)||(11032910-11032959)
chr4 (890-934)||(20016180-20016224)
chr4 (888-939)||(55419792-55419843)
chr4 (51-152)||(20020552-20020653)
[»] chr8 (2 HSPs)
chr8 (868-945)||(19727871-19727948)
chr8 (53-186)||(19727108-19727241)
[»] chr1 (9 HSPs)
chr1 (877-946)||(51381438-51381507)
chr1 (876-928)||(23896138-23896190)
chr1 (878-927)||(24629213-24629262)
chr1 (86-162)||(25611754-25611830)
chr1 (877-920)||(24246506-24246549)
chr1 (876-927)||(25478863-25478914)
chr1 (877-927)||(24242859-24242909)
chr1 (877-927)||(51782798-51782848)
chr1 (877-927)||(51858605-51858655)
[»] chr2 (10 HSPs)
chr2 (878-927)||(36577366-36577415)
chr2 (878-923)||(33026657-33026702)
chr2 (878-953)||(7160730-7160805)
chr2 (881-952)||(7168667-7168738)
chr2 (876-923)||(33038158-33038205)
chr2 (878-952)||(7156169-7156243)
chr2 (888-932)||(6538844-6538888)
chr2 (878-946)||(7174356-7174424)
chr2 (879-923)||(33020314-33020358)
chr2 (878-927)||(34570471-34570520)
[»] scaffold0015 (2 HSPs)
scaffold0015 (876-927)||(32331-32382)
scaffold0015 (877-927)||(40383-40433)
[»] scaffold0200 (1 HSPs)
scaffold0200 (877-925)||(782-830)
[»] chr6 (12 HSPs)
chr6 (881-937)||(370777-370833)
chr6 (879-927)||(24417488-24417536)
chr6 (884-939)||(1442098-1442153)
chr6 (880-927)||(19119065-19119112)
chr6 (880-927)||(19126359-19126406)
chr6 (882-928)||(9819830-9819876)
chr6 (889-939)||(176345-176395)
chr6 (882-932)||(7564748-7564798)
chr6 (882-928)||(9825516-9825562)
chr6 (882-927)||(1459543-1459588)
chr6 (882-927)||(1470925-1470970)
chr6 (882-927)||(9703888-9703933)
[»] scaffold1004 (1 HSPs)
scaffold1004 (879-926)||(2144-2191)
[»] scaffold0760 (1 HSPs)
scaffold0760 (879-926)||(4639-4686)


Alignment Details
Target: chr3 (Bit Score: 957; Significance: 0; HSPs: 72)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 957; E-Value: 0
Query Start/End: Original strand, 1 - 1053
Target Start/End: Original strand, 3753723 - 3754775
Alignment:
Q  1 caatcagctctcggttgtaccaccttcacccaatcaccgccgttataaccattcacttccaactcttccttacgacgtcattccagaaatcctatgtagg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3753723 caatcagctctcggttgtaccaccttcacccaatcaccgccgttataaccattcacttccaactcttccttacgacgtcattccagaaatcctatgtagg 3753822  T
Q  101 ttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgatccaaaattcgtcaagaaacaactccgtgtgtcca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3753823 ttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgatccaaaattcgtcaagaaacaactcagtgtgtcca 3753922  T
Q  201 tcgctcggaacctccacttcctaaactacagccgttggtcacacaagtatattctcacatcttatccaatcgactctattttcagagacataacctctaa 300  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3753923 tcgcttggaacctccacttcctaaactacagccgttggtcacacaagtatattctcacatcttatccaatcgactctattttcacagacataacctctaa 3754022  T
Q  301 cttcatacaatctgagtataacctttctaatgaagatcggacttatggcaaactttattttatcattggctcttgcaacggcattgtgtgtattgcagac 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754023 cttcatacaatctgagtataacctttctaatgaagatcggacttatggcaaactttattttatcattggctcttgcaacggcattgtgtgtattgcagac 3754122  T
Q  401 aatcataacggcttagttatattgtggaacccttccacnnnnnnnntcaagcagttgcccctttatgaaaagtcgaatggtcctactctcatgacgtttg 500  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754123 aatcataacggcttagttatattgtggaacccttccacaaaaaaaatcaagcagttgcccctttatgaaaagtcgaatggtcctactctcatgacgtttg 3754222  T
Q  501 gctttggctatgattctttaaacgataattacaaggtggttgttgttcttgcctacctagttcttgatgaggattataggttttttaacaaaaataaagt 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754223 gctttggctatgattctttaaacgataattacaaggtggttgttgttcttgcctacctagttcttgatgaggattataggttttttaacaaaaataaagt 3754322  T
Q  601 aaaggttcatactttgggtactaatatatggagaaccatccaggactatcctcttggaggtcttcctgttccagttatgaagggggaatttgtgagtggc 700  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3754323 aaaggttcatactttgggtactaatatatggagaaccatccaggactatccttttggaggtcttcctgttccagttatgaagggggaatttgtgagtggc 3754422  T
Q  701 acaattaattggttgttgtccgaagaatcatcggaatgtccacgctttattgtttcatttgatttggcaaaggagtcttatcaaaagatttcacctccta 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||    
T  3754423 acaattaattggttgttgtccgaagaatcatcggaatgtccacgctttattgtttcttttgatttggcaaaggagtcatatcaaaagatttcacctccta 3754522  T
Q  801 atttgggaggggtggatgttggtgacttgtcggttttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaata 900  Q
    |||||||||||||||||||  ||||| |||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  3754523 atttgggaggggtggatgtgtgtgacatgtcggctttgagtgttttgagggattgcttgtgcgtgacttctggtgttgatgtttgggttatgaaggaata 3754622  T
Q  901 tggaaataaagagtcttggactaaatttttcactattccttacatgagagatccttctaaacctaaggcctttgcgaaggcattgtatacttttgaggat 1000  Q
    ||||||||||||||||||||||||||| || |||||||||| |||||||||||||||||||||  ||| |||||||||||||||||||||||||||||||    
T  3754623 tggaaataaagagtcttggactaaattgtttactattccttgcatgagagatccttctaaacccgaggtctttgcgaaggcattgtatacttttgaggat 3754722  T
Q  1001 gatcaagtgttgctgaagtttatgaatgatattgacttgaatttggttcttta 1053  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3754723 gatcaagtgttgctgaagtttatgaatgatattgacttgaatttggttcttta 3754775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 363 - 1053
Target Start/End: Complemental strand, 4142709 - 4142016
Alignment:
Q  363 tcattggctcttgcaacggcattgtgtgtattgcagacaatca---taacggcttagttatattgtggaacccttccacnnnnnnnntcaagcagttgcc 459  Q
    ||||||||||||||||||||||||||||| ||||||||||  |   ||   ||||||||||||  ||||||||||||||        ||||| |||||||    
T  4142709 tcattggctcttgcaacggcattgtgtgtcttgcagacaacgaatatacaagcttagttatatgttggaacccttccacaagaaaattcaaggagttgcc 4142610  T
Q  460 cctttatgaaaagtc---gaatggtcctactctcatgacgtttggctttggctatgattctttaaacgataattacaaggtggttgttgttcttgcctac 556  Q
    ||||| ||||||| |   || |||||  | | |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||    
T  4142609 cctttttgaaaagcccacgactggtctaaatgtcatgacgtttggctttggctatgattcttcaaaggataattacaaggtggttgttgttcttgactac 4142510  T
Q  557 ctagttcttgatgaggattataggttttttaacaaaaataaagtaaaggttcatactttgggtactaatatatggagaaccatccaggactatcctcttg 656  Q
    | | ||||||||||||||||||| ||| ||||||||| | |||||| |||||||||||||||||||||||||||||||||||| ||||| |||||| |||    
T  4142509 caatttcttgatgaggattatagttttgttaacaaaactcaagtaatggttcatactttgggtactaatatatggagaaccattcaggagtatccttttg 4142410  T
Q  657 gaggtcttcctgttccagttatgaagggggaatttgtgagtggcacaattaattggttgttgtccgaagaatcatcggaatgtccacgctttattgtttc 756  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |||||||||||||    
T  4142409 gaggtcttcctgttccagttaagaagggggaatttgtgagtggcacaattaattggttgttctccgaagaatcattggaatgtccatgctttattgtttc 4142310  T
Q  757 atttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttttgagggattgc 856  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4142309 ttttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttttgagggattgc 4142210  T
Q  857 ttatgcgt---gacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagatc 953  Q
    || |||||   |||||||||   |||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4142209 ttgtgcgtgacgacttctggctatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactattccttacatgagagatc 4142110  T
Q  954 cttctaaacctaaggcctttgcgaaggcattgtatacttttgaggatgatcaagtgttgctgaagtttatgaatgatattgacttgaatttggttcttta 1053  Q
    ||||||||||||||| |  ||| | |||| | |||  |||||||||||||||||||||||||||||      ||||| |||||||||||||| |||||||    
T  4142109 cttctaaacctaaggtcgatgccagggcaatatatgtttttgaggatgatcaagtgttgctgaagt------atgattttgacttgaatttgattcttta 4142016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 363 - 1053
Target Start/End: Complemental strand, 4158519 - 4157823
Alignment:
Q  363 tcattggctcttgcaacggcattgtgtgtattgcagacaatca---taacggcttagttatattgtggaacccttccacnnnnnnnntcaagcagttgcc 459  Q
    ||||||| ||||||||||||||||||||||||||||||||  |   ||   ||||||||||||  ||||||||||| ||        ||||| |||||||    
T  4158519 tcattggttcttgcaacggcattgtgtgtattgcagacaacgaatatacaagcttagttatatgttggaacccttcaacaagaaaattcaaggagttgcc 4158420  T
Q  460 cctttatgaaaagtc---gaatggtcctactctcatgacgtttggctttggctatgattctttaaacgataattacaaggtggttgttgttcttgcctac 556  Q
    ||||| ||||||| |   || ||||   | | |||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||  |||    
T  4158419 cctttttgaaaagcccatgactggtgtaaatgtcatgacgtttggctttggctatgattcttcaaaggataattacaaggtggttgttgttcttgaatac 4158320  T
Q  557 ctagttcttgatgaggattataggttttttaacaaaaataaagtaaaggttcatactttgggtactaatatatggagaaccatccaggactatcctcttg 656  Q
    |||||||||||||||||| |||| ||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||| |||||||||| | |||    
T  4158319 ctagttcttgatgaggatgatagtttttttaacaaaactcaagtaaaggttcatactttgggtactaatatttggagaaccattcaggactatcattttg 4158220  T
Q  657 gaggtcttcctgttccagttatgaagggggaatttgtgagtggcacaattaattggttgttgtccgaagaa---tcatcggaatgtccacgctttattgt 753  Q
    | ||||||  ||||||    ||||||||||||||||||||||| || |||||||||||||| ||  ||||    |  | ||||| |||| ||||||||||    
T  4158219 gcggtcttattgttccc---atgaagggggaatttgtgagtggtacgattaattggttgttctctaaagagcagttctgggaatatccatgctttattgt 4158123  T
Q  754 ttcatttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttttgagggat 853  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| |||||||||||||||||||    
T  4158122 ttcatttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgtgtgtgacttgtcggctttgggtgttttgagggat 4158023  T
Q  854 tgcttatgcgtg---acttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagag 950  Q
    ||||| ||||||   |||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||  |||||| ||||     
T  4158022 tgcttgtgcgtgaccacttctggttatgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattgttcactatctcttacaagagac 4157923  T
Q  951 atccttctaaacctaaggcctttgcgaaggcattgtatacttttgaggatgatcaagtgttgctgaagtttatgaatgatattgacttgaatttggttct 1050  Q
    |||||||||||  |||||| ||||| |||||| | |||  ||||||||||||||||||||||||| |||   || |||||  ||||||||||||||| ||    
T  4157922 atccttctaaatttaaggcttttgccaaggcaatatatgtttttgaggatgatcaagtgttgctggagt---tgtatgattctgacttgaatttggtcct 4157826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 142; E-Value: 6e-74
Query Start/End: Original strand, 59 - 315
Target Start/End: Complemental strand, 4142992 - 4142736
Alignment:
Q  59 ccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaa 158  Q
    ||||||||||||| ||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4142992 ccaactcttccttccgacgtcattccagaaatcatatgtaggctaccagtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattctctaa 4142893  T
Q  159 tatccgatccaaaattcgtcaagaaacaactccgtgtgtccatcgctcggaacctccacttcctaaactacagccgttg-gtcacacaagtatattctca 257  Q
    |||| ||||| |||||||||||||| |||||| ||||||||| | |||||||||||||||||| ||||||| |||  ||  |||   ||||| |||||||    
T  4142892 tatctgatcccaaattcgtcaagaagcaactctgtgtgtccaccactcggaacctccacttccgaaactac-gcctatgactcaagaaagtacattctca 4142794  T
Q  258 catcttatccaatcgactctattttcagagacataacctctaacttcatacaatctga 315  Q
    ||||||||||| | ||||||  ||||| |||||||||||||||||||| |||||||||    
T  4142793 catcttatccactggactctgatttcacagacataacctctaacttcacacaatctga 4142736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 130; E-Value: 8e-67
Query Start/End: Original strand, 59 - 315
Target Start/End: Complemental strand, 4158802 - 4158546
Alignment:
Q  59 ccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaa 158  Q
    ||||||||||||| ||||||||||| ||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||    
T  4158802 ccaactcttccttccgacgtcattctagaaatcatatgtaggctaccggtaaagttcatcctccgattccaatgtgtttgcaagtcatggaattctctaa 4158703  T
Q  159 tatccgatccaaaattcgtcaagaaacaactccgtgtgtccatcgctcggaacctccacttcctaaactacagccgttg-gtcacacaagtatattctca 257  Q
    |||| ||||| |||||||||||||| |||||| ||||||||| | |||||||||||||||||||||||||  |||  ||  |||   ||||| |||||||    
T  4158702 tatctgatcccaaattcgtcaagaagcaactctgtgtgtccaccactcggaacctccacttcctaaacta-tgcctatgactcaagaaagtacattctca 4158604  T
Q  258 catcttatccaatcgactctattttcagagacataacctctaacttcatacaatctga 315  Q
    ||||||| ||| ||||||||  ||||| |||||||| ||||||||||| |||||||||    
T  4158603 catcttacccactcgactctgatttcacagacataaactctaacttcacacaatctga 4158546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 117; E-Value: 5e-59
Query Start/End: Original strand, 736 - 944
Target Start/End: Original strand, 3745866 - 3746074
Alignment:
Q  736 atgtccacgctttattgtttcatttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggtt 835  Q
    ||||||| ||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||| | | |||||| | |||||  |||||||||||  |    
T  3745866 atgtccatgctttattgtttcttttgatttggcaaaggagacttttcaaaagatttcacctcctagtattggagggatagatgtgtgtgacttgtcgtct 3745965  T
Q  836 ttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcacta 935  Q
    ||||||||||| ||||||||||| |||||||||||||||| |||| ||||| ||||||||||||||| |||  ||||||||||||||||||| || ||||    
T  3745966 ttgggtgttttaagggattgcttgtgcgtgacttctggtgatgatatttggattatgaaggaatatgcaaagcaagagtcttggactaaattgttgacta 3746065  T
Q  936 ttccttaca 944  Q
    |||||||||    
T  3746066 ttccttaca 3746074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 62 - 180
Target Start/End: Original strand, 3745168 - 3745286
Alignment:
Q  62 actcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatat 161  Q
    |||||||||| ||||||||||||||||||| |||||||| ||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||    
T  3745168 actcttccttccgacgtcattccagaaatcttatgtaggctaccggtgaagttcatccttcaattccgatgtgtttgcaagtcatggaattctctaatat 3745267  T
Q  162 ccgatccaaaattcgtcaa 180  Q
    | ||||| ||||| |||||    
T  3745268 ctgatcccaaatttgtcaa 3745286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 82; E-Value: 4e-38
Query Start/End: Original strand, 746 - 943
Target Start/End: Complemental strand, 2678582 - 2678385
Alignment:
Q  746 tttattgtttcatttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttt 845  Q
    ||||||||||| |||||||||||||| ||||||||||||||| | |||||||||| ||  |||||||   |||| ||| |  || |    ||||||||||    
T  2678582 tttattgtttcttttgatttggcaaaagagtcttatcaaaagctatcacctcctagttatggaggggcaaatgtgggtaaaatgcctaccttgggtgttt 2678483  T
Q  846 tgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttac 943  Q
    ||| ||||||||| ||| |||||| ||||| ||||||||||||||||||  |||||||||| |||||||| ||||||||||| |||||||||||||||    
T  2678482 tgaaggattgcttgtgcttgacttgtggtgatgatgtttgggttatgaaacaatatggaaaaaaagagtcatggactaaattgttcactattccttac 2678385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 748 - 942
Target Start/End: Complemental strand, 2686496 - 2686299
Alignment:
Q  748 tattgtttcatttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgttttg 847  Q
    ||||||||| |||||||||||||| ||||||||||||||||| || ||||||| ||  |||||||| |||||  || || ||      ||||||||||||    
T  2686496 tattgtttcttttgatttggcaaaagagtcttatcaaaagatatcccctcctagttatggaggggtagatgtctgtaacatgcttaccttgggtgttttg 2686397  T
Q  848 agggattgcttatgcgtgacttctggtgttgatgtttgggttat---gaaggaatatggaaataaagagtcttggactaaatttttcactattcctta 942  Q
    |||||||| || ||| |||  | ||||| |||||||||||||||   ||||||||||||||| ||||||||||||| |||||| ||||||||||||||    
T  2686396 agggattgtttgtgcttgatctgtggtgatgatgtttgggttattatgaaggaatatggaaaaaaagagtcttggaataaattgttcactattcctta 2686299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 835 - 934
Target Start/End: Complemental strand, 803312 - 803213
Alignment:
Q  835 tttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcact 934  Q
    ||||||| | |||||||||||||| ||| ||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||    
T  803312 tttgggtatgttgagggattgcttgtgcatgatttctggtgatgatgtttgggttatgaaagaatatggaaataaagagtcttggactaagttgttcact 803213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 832 - 956
Target Start/End: Original strand, 989350 - 989474
Alignment:
Q  832 ggttttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttc 931  Q
    |||||||  ||||||||| |||||||| ||| |   |||||||| |||||||||||| ||||| || || |||||||||||||||||||||||||| |||    
T  989350 ggttttgactgttttgagagattgcttgtgcattttttctggtgatgatgtttgggtaatgaaagagtacggaaataaagagtcttggactaaattgttc 989449  T
Q  932 actattccttacatgagagatcctt 956  Q
    |||||| ||||||||  ||||||||    
T  989450 actatttcttacatgcaagatcctt 989474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 878 - 949
Target Start/End: Original strand, 2456249 - 2456320
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgaga 949  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||| | |  ||||||||||||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattgtaccatattccttacatgaga 2456320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 836 - 942
Target Start/End: Original strand, 968629 - 968735
Alignment:
Q  836 ttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcacta 935  Q
    |||||||| ||||||||||| || ||| ||| |   |||  |||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||    
T  968629 ttgggtgtgttgagggattgtttgtgcatgattatcggtcatgatgtttgggttatgaaggaacatggaaataaagagtcatggactaaattattcacta 968728  T
Q  936 ttcctta 942  Q
    || ||||    
T  968729 tttctta 968735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 840 - 937
Target Start/End: Original strand, 1007423 - 1007520
Alignment:
Q  840 gtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactatt 937  Q
    ||||||| |||||||||||   ||||  || ||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  1007423 gtgtttttagggattgcttgaccgtgttttgtggtgatgatgtttgggtaatgaaggaatatggaaataacgagtcctggactaaattgttcactatt 1007520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 840 - 937
Target Start/End: Original strand, 1022451 - 1022548
Alignment:
Q  840 gtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactatt 937  Q
    ||||||| |||||||||||   ||||  || ||||| |||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||    
T  1022451 gtgtttttagggattgcttgaccgtgttttgtggtgatgatgtttgggtaatgaaggaatatggaaataacgagtcatggactaaattgttcactatt 1022548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 835 - 934
Target Start/End: Complemental strand, 2696826 - 2696727
Alignment:
Q  835 tttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcact 934  Q
    ||||||||| || |||||||||||  || ||| ||| | |  |||||||||| ||||||||||||||||||||||||||||||||| |||||| ||||||    
T  2696826 tttgggtgtgttaagggattgcttgggcttgatttccgatcatgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattgttcact 2696727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 54 - 159
Target Start/End: Original strand, 967861 - 967966
Alignment:
Q  54 cacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattt 153  Q
    ||||||| |||||||||| |||  ||||||||||||| ||||||||| || |||||||| || || | | |||||||||||| |||||||| |||||||     
T  967861 cacttccgactcttcctttcgatctcattccagaaattctatgtaggctatcggtaaagctcctcatgcaattccgatgtgtgtgcaagtcgtggaattc 967960  T
Q  154 tctaat 159  Q
    ||||||    
T  967961 tctaat 967966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 868 - 925
Target Start/End: Original strand, 997566 - 997623
Alignment:
Q  868 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaa 925  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||    
T  997566 ttctggtgatgttgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 997623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 868 - 925
Target Start/End: Original strand, 1013956 - 1014013
Alignment:
Q  868 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaa 925  Q
    |||||||| || ||||||||| ||||||||||||||||||||||||||||||||||||    
T  1013956 ttctggtgatgttgtttgggtaatgaaggaatatggaaataaagagtcttggactaaa 1014013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 877 - 946
Target Start/End: Complemental strand, 1931206 - 1931137
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    ||||||||||||||||| |||| ||||||||||||| || ||||||||||| ||||||||| ||||||||    
T  1931206 tgatgtttgggttatgatggaacatggaaataaagactcctggactaaattgttcactatttcttacatg 1931137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 878 - 927
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 54 - 174
Target Start/End: Complemental strand, 2679298 - 2679178
Alignment:
Q  54 cacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattt 153  Q
    ||||||| |||||||||| |||| |||| ||||| || || | |||||||| ||| || ||| |||||| | |||||||||| |||||||||||||| |     
T  2679298 cacttcccactcttcctttcgacctcatcccagatatactgtctaggttacaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatc 2679199  T
Q  154 tctaatatccgatccaaaatt 174  Q
    ||| || ||||||||||||||    
T  2679198 tctgatctccgatccaaaatt 2679178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 881 - 953
Target Start/End: Complemental strand, 9587233 - 9587161
Alignment:
Q  881 gtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagatc 953  Q
    |||||| |||||||||||||||||||||||||| ||||||| ||||| | || ||||||||||||| ||||||    
T  9587233 gtttggattatgaaggaatatggaaataaagagccttggacaaaattgtacaatattccttacatgggagatc 9587161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 840 - 955
Target Start/End: Original strand, 956343 - 956458
Alignment:
Q  840 gtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcc 939  Q
    ||||||| ||||||||||| ||| ||| || ||||   ||||||||| ||||||||||||||||||| ||||||||||||  |||||| |||| |||| |    
T  956343 gtgttttcagggattgcttgtgcatgatttttggttgcgatgtttggattatgaaggaatatggaaaaaaagagtcttggcataaattgttcattatttc 956442  T
Q  940 ttacatgagagatcct 955  Q
    | |||||  |||||||    
T  956443 tcacatgcaagatcct 956458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 836 - 927
Target Start/End: Original strand, 2459233 - 2459324
Alignment:
Q  836 ttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||| ||||| |||||||| | | | | |||||||  || ||||||| |||||||||||||||||||||||||||||||||| |||||    
T  2459233 ttgggtgtattgagtgattgcttgtccataatttctggtcatgttgtttggattatgaaggaatatggaaataaagagtcttggacaaaatt 2459324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 876 - 927
Target Start/End: Complemental strand, 9608397 - 9608346
Alignment:
Q  876 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  9608397 ttgatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 837 - 927
Target Start/End: Complemental strand, 1891156 - 1891066
Alignment:
Q  837 tgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||| ||||||||||| || ||| ||  || ||||  |||||||||| ||||||||||| ||||||||||||| ||||||||||||||    
T  1891156 tgggtgtgttgagggattgtttgtgcctggtttttggtcatgatgtttggattatgaaggaacatggaaataaagactcttggactaaatt 1891066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 485 - 547
Target Start/End: Original strand, 2441622 - 2441684
Alignment:
Q  485 actctcatgacgtttggctttggctatgattctttaaacgataattacaaggtggttgttgtt 547  Q
    |||| |||| ||||||||||||||||||||||||| || ||||||||||| ||||||||||||    
T  2441622 actcacatggcgtttggctttggctatgattcttttaatgataattacaaagtggttgttgtt 2441684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 878 - 940
Target Start/End: Complemental strand, 2644413 - 2644351
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcct 940  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||||| | ||||||||||    
T  2644413 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2644351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 878 - 940
Target Start/End: Complemental strand, 2659203 - 2659141
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcct 940  Q
    ||||||||| |||||||||| ||||||||| ||||||||||||||||||| | ||||||||||    
T  2659203 gatgtttggattatgaaggagtatggaaatcaagagtcttggactaaattgtacactattcct 2659141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 878 - 927
Target Start/End: Complemental strand, 771550 - 771501
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  771550 gatgtttgggttatgaaggaatatggaaatacagactcttggactaaatt 771501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 836 - 937
Target Start/End: Complemental strand, 1937073 - 1936972
Alignment:
Q  836 ttgggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcacta 935  Q
    |||||||| ||||||||||| || ||| ||  || ||||  |||||||||||||||||||||||||  ||||||||| || ||| ||||||| |||||||    
T  1937073 ttgggtgtgttgagggattgtttgtgcatggtttttggttatgatgtttgggttatgaaggaatataaaaataaagaatcctggtctaaattgttcacta 1936974  T
Q  936 tt 937  Q
    ||    
T  1936973 tt 1936972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 877 - 946
Target Start/End: Complemental strand, 1940631 - 1940562
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    |||||||||||||||||||||| |||||||| |||| || ||||||||||| ||||||||| ||| ||||    
T  1940631 tgatgtttgggttatgaaggaacatggaaatcaagactcgtggactaaattgttcactatttcttgcatg 1940562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 878 - 934
Target Start/End: Original strand, 2442039 - 2442095
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcact 934  Q
    ||||||||| |||||||||| |||||||||||||| |||||||||||||| ||||||    
T  2442039 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattgttcact 2442095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 879 - 927
Target Start/End: Original strand, 2631358 - 2631406
Alignment:
Q  879 atgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaatt 2631406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 878 - 953
Target Start/End: Complemental strand, 7334290 - 7334215
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagatc 953  Q
    ||||||||| | |||||||| || |||||||||||||||||||||||||| | |||||||||| || ||| |||||    
T  7334290 gatgtttggatcatgaaggactacggaaataaagagtcttggactaaattgtacactattcctaacctgaaagatc 7334215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 184
Target Start/End: Complemental strand, 2651264 - 2651142
Alignment:
Q  62 actcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatat 161  Q
    |||||||||| |||| | |||| |||||| ||| ||||||||||||||||| || || ||| | | |||||||| |||||| ||||||||| ||| || |    
T  2651264 actcttcctttcgaccttattcaagaaattctacgtaggttaccggtaaagctcctctttcaacttcgatgtgtctgcaagccatggaattctcttatct 2651165  T
Q  162 ccgatccaaaattcgtcaagaaa 184  Q
    ||||||  |||||| ||| ||||    
T  2651164 ccgatcacaaattcatcatgaaa 2651142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 877 - 943
Target Start/End: Complemental strand, 7432106 - 7432040
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttac 943  Q
    ||||||||||  |||||||||||||||||||||||| || ||||||||||| ||||| ||| |||||    
T  7432106 tgatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattgttcaccatttcttac 7432040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 490 - 551
Target Start/End: Original strand, 3745614 - 3745675
Alignment:
Q  490 catgacgtttggctttggctatgattctttaaacgataattacaaggtggttgttgttcttg 551  Q
    |||| |||||||||| || ||| |||||| ||| ||||||||||||||||||||||||||||    
T  3745614 catgtcgtttggcttcggttataattcttcaaaggataattacaaggtggttgttgttcttg 3745675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 878 - 927
Target Start/End: Complemental strand, 7324482 - 7324433
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| |||||||||| || ||||||||||||||||||||||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaatt 7324433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 878 - 927
Target Start/End: Complemental strand, 37753396 - 37753347
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  37753396 gatgtttggattatggaggaatatggaaagaaagagtcttggactaaatt 37753347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 878 - 927
Target Start/End: Original strand, 43991960 - 43992009
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| |||||    
T  43991960 gatgtttggattatgaaggaatatggaaatatagagtcttggaccaaatt 43992009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 878 - 946
Target Start/End: Original strand, 2476634 - 2476702
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    ||||||||| |||||||  | ||||||||||||||||||||||||||||| | |||| ||||| |||||    
T  2476634 gatgtttggattatgaaacactatggaaataaagagtcttggactaaattgtacactgttcctaacatg 2476702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #44
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 878 - 946
Target Start/End: Original strand, 7942485 - 7942553
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    ||||||||| |||||||||| ||||| |||||||||||||||| |||||| | || | |||||||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattgtacaatgttccttacatg 7942553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #45
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 878 - 953
Target Start/End: Complemental strand, 783850 - 783775
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagatc 953  Q
    ||||||||| ||||||||||||||||||||| | || | ||||||||||| |  ||| ||||||||||| ||||||    
T  783850 gatgtttggattatgaaggaatatggaaatacaaagccatggactaaattgtatactgttccttacatgggagatc 783775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #46
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 878 - 940
Target Start/End: Original strand, 2502148 - 2502210
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcct 940  Q
    ||||||||| |||||||||| ||||||||||| |||| |||||||||| | | ||||||||||    
T  2502148 gatgtttggattatgaaggagtatggaaataaggagttttggactaaactgtacactattcct 2502210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #47
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 174
Target Start/End: Complemental strand, 2687203 - 2687085
Alignment:
Q  56 cttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttc 155  Q
    ||||| || ||||||| |||| |||| ||||| || || | |||||| | ||| || ||| |||||| | |||||||||| |||||||||||||| | ||    
T  2687203 cttcccacccttcctttcgacctcatcccagatatactgtctaggttgcaggtgaaattcctccttcaactccgatgtgtctgcaagtcatggaaatctc 2687104  T
Q  156 taatatccgatccaaaatt 174  Q
    | || ||||||||||||||    
T  2687103 tgatctccgatccaaaatt 2687085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #48
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 878 - 932
Target Start/End: Original strand, 12133097 - 12133151
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttca 932  Q
    |||||||||||||||| ||| |||||||||| |||||| ||||||||||| ||||    
T  12133097 gatgtttgggttatgagggagtatggaaatagagagtcgtggactaaattgttca 12133151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #49
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 888 - 938
Target Start/End: Original strand, 44001605 - 44001655
Alignment:
Q  888 ttatgaaggaatatggaaataaagagtcttggactaaatttttcactattc 938  Q
    |||||||||||||||||| ||||||||||||||||||| | | ||||||||    
T  44001605 ttatgaaggaatatggaattaaagagtcttggactaaactgtacactattc 44001655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #50
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 878 - 927
Target Start/End: Complemental strand, 754660 - 754611
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| |||||||||| |||||| || |||||||||||||||||||    
T  754660 gatgtttggattatgaaggagtatggagatcaagagtcttggactaaatt 754611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #51
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 886 - 927
Target Start/End: Original strand, 1438003 - 1438044
Alignment:
Q  886 ggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||||||||||||||||||||| ||||||| ||||||    
T  1438003 ggttatgaaggaatatggaaataaagactcttggattaaatt 1438044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #52
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 878 - 927
Target Start/End: Complemental strand, 9562036 - 9561987
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| ||||||| || ||||||||| |||||||||||||||||||    
T  9562036 gatgtttggattatgaatgagtatggaaatcaagagtcttggactaaatt 9561987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #53
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 880 - 945
Target Start/End: Original strand, 23197014 - 23197079
Alignment:
Q  880 tgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacat 945  Q
    ||||||| | |||||||||||||||||| |||| |||||||||||||| ||   ||||||||||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattgtttcgtattccttacat 23197079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #54
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 78 - 166
Target Start/End: Complemental strand, 804060 - 803972
Alignment:
Q  78 tcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatccgat 166  Q
    ||||| |||||||  | ||| ||||||| || |||||| | |||| | ||||||| ||||||||||||||||||| |||||||| ||||    
T  804060 tcattgcagaaattttgtgttggttacctgtgaagttcttacttcaactccgatgcgtttgcaagtcatggaattctctaatatgcgat 803972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #55
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 879 - 927
Target Start/End: Original strand, 2492083 - 2492131
Alignment:
Q  879 atgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||| |||||||||| |||||||||  ||||||||||||||||||    
T  2492083 atgtttggattatgaaggagtatggaaatcgagagtcttggactaaatt 2492131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #56
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 884 - 927
Target Start/End: Complemental strand, 7427650 - 7427607
Alignment:
Q  884 tgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||    
T  7427650 tgggttatgatggaatatggaaataaagagtcgtgggctaaatt 7427607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #57
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 493 - 544
Target Start/End: Original strand, 12132703 - 12132754
Alignment:
Q  493 gacgtttggctttggctatgattctttaaacgataattacaaggtggttgtt 544  Q
    |||| |||||||||||||||||||||  |  |||||||||||||||||||||    
T  12132703 gacgcttggctttggctatgattcttgtactgataattacaaggtggttgtt 12132754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #58
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 884 - 927
Target Start/End: Original strand, 12218033 - 12218076
Alignment:
Q  884 tgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||||| ||||||||||||||||||||| ||| |||||||    
T  12218033 tgggttatgatggaatatggaaataaagagtcgtgggctaaatt 12218076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #59
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 1003714 - 1003788
Alignment:
Q  85 agaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaat 159  Q
    ||||||||||  ||||||||| || ||| || |||||| | | ||||| | ||||||||||||||||||||||||    
T  1003714 agaaatcctagctaggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaat 1003788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #60
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 159
Target Start/End: Original strand, 1021711 - 1021785
Alignment:
Q  85 agaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaat 159  Q
    ||||||||||  ||||||||| || ||| || |||||| | | ||||| | ||||||||||||||||||||||||    
T  1021711 agaaatcctagctaggttaccagtgaagctcctccttcaacttcgatgcgcttgcaagtcatggaattttctaat 1021785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #61
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 53 - 159
Target Start/End: Complemental strand, 1937826 - 1937720
Alignment:
Q  53 tcacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaatt 152  Q
    |||||||| ||||||||||  ||  |||||||||||||||| | |||| || |||| ||  || ||||  ||||||| || ||||||||||||| |||||    
T  1937826 tcacttcccactcttccttttgatctcattccagaaatcctctctaggctatcggtgaaactcctcctgagattccggtgcgtttgcaagtcatagaatt 1937727  T
Q  153 ttctaat 159  Q
     ||||||    
T  1937726 ctctaat 1937720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #62
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 495 - 549
Target Start/End: Complemental strand, 2686752 - 2686698
Alignment:
Q  495 cgtttggctttggctatgattctttaaacgataattacaaggtggttgttgttct 549  Q
    |||||||||| ||||| |||||||| || || |||||||||||| ||||||||||    
T  2686752 cgtttggcttcggctacgattcttttaaggagaattacaaggtgattgttgttct 2686698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #63
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 366 - 432
Target Start/End: Original strand, 3745484 - 3745550
Alignment:
Q  366 ttggctcttgcaacggcattgtgtgtattgcagacaatcataacggcttagttatattgtggaaccc 432  Q
    |||||||||||||||||||  | |||||||||||  || |||| ||||| |||||| ||||||||||    
T  3745484 ttggctcttgcaacggcatcctttgtattgcagatgattataaaggcttggttatactgtggaaccc 3745550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #64
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 946
Target Start/End: Original strand, 13479584 - 13479646
Alignment:
Q  884 tgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    ||||| ||||| |||||||||| | ||||||||||||| ||||| ||||||||| || |||||    
T  13479584 tgggtcatgaaagaatatggaattcaagagtcttggacaaaattgttcactatttctaacatg 13479646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #65
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 890 - 927
Target Start/End: Complemental strand, 746422 - 746385
Alignment:
Q  890 atgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  746422 atgaaggagtatggaaatcaagagtcttggactaaatt 746385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #66
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 839 - 933
Target Start/End: Original strand, 899967 - 900063
Alignment:
Q  839 ggtgttttgagggattgcttatgcgtgacttctggtgttgatgtttgggt--tatgaaggaatatggaaataaagagtcttggactaaatttttcac 933  Q
    ||||| |||||||| ||||| ||| ||| |||| ||  ||||||||||||  |||||| |||||| |||| |||||||||| || |||||| |||||    
T  899967 ggtgtgttgagggaatgcttgtgcatgatttcttgtcatgatgtttgggttatatgaatgaatattgaaacaaagagtcttcgattaaattgttcac 900063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #67
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 738 - 787
Target Start/End: Original strand, 2441875 - 2441924
Alignment:
Q  738 gtccacgctttattgtttcatttgatttggcaaaggagtcttatcaaaag 787  Q
    |||||||||||||| |||| ||||||||||  || |||||||||||||||    
T  2441875 gtccacgctttattatttcttttgatttggagaaagagtcttatcaaaag 2441924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #68
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 597 - 642
Target Start/End: Complemental strand, 2686644 - 2686599
Alignment:
Q  597 aagtaaaggttcatactttgggtactaatatatggagaaccatcca 642  Q
    ||||||||||||||||||||||| ||||||| |||| || ||||||    
T  2686644 aagtaaaggttcatactttgggttctaatatttggaaaaacatcca 2686599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #69
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 878 - 927
Target Start/End: Complemental strand, 7430587 - 7430538
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| |||||||| | |||||||||||| |||||| |||||||||    
T  7430587 gatgtttggattatgaagaagtatggaaataaaaagtcttagactaaatt 7430538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #70
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 924
Target Start/End: Complemental strand, 7443027 - 7442982
Alignment:
Q  879 atgtttgggttatgaaggaatatggaaataaagagtcttggactaa 924  Q
    |||||||| | |||||||| ||||||||| ||||||||||||||||    
T  7443027 atgtttggatcatgaaggagtatggaaatcaagagtcttggactaa 7442982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #71
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 878 - 927
Target Start/End: Complemental strand, 9565880 - 9565831
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| |||||||||| || ||| || |||||||||||||||||||    
T  9565880 gatgtttggattatgaaggagtacggagatcaagagtcttggactaaatt 9565831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #72
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 888 - 921
Target Start/End: Complemental strand, 37757777 - 37757744
Alignment:
Q  888 ttatgaaggaatatggaaataaagagtcttggac 921  Q
    ||||||||||||||||||| ||||||||||||||    
T  37757777 ttatgaaggaatatggaaacaaagagtcttggac 37757744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 20)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 623 - 1053
Target Start/End: Original strand, 11081555 - 11081988
Alignment:
Q  623 aatatatggagaaccatccaggactatcctcttggaggtcttcctgttccagttatgaagggggaatttgtgagtggcacaattaatt-ggttgttgtcc 721  Q
    ||||| ||||||||||| ||||| |||| | |||| ||||||  |||||| |||||||| |||||||||||||||||| ||||||||| ||||||| ||     
T  11081555 aatatttggagaaccattcaggattatctttttggcggtcttattgttcccgttatgaaaggggaatttgtgagtggcgcaattaatttggttgttctct 11081654  T
Q  722 gaagaatcatcggaatgtccacgctttattgtttcatttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttg 821  Q
     | |  |  | |||||||||||||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||      
T  11081655 aatgg-tgttgggaatgtccacgctttattgtttgtttcgatttggcaaaggagtcttatcaaaagatttcacctcctaatttggaaggggtggatgtgc 11081753  T
Q  822 gtgacttgtcggttttgggtgttttgagggattgcttatgcgtgac---ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttg 918  Q
    || ||||||||| |||||||||||||||||||||||| || |||||   | || ||| ||||||||||||||||||||| ||||||||||||||||||||    
T  11081754 gtaacttgtcggctttgggtgttttgagggattgcttgtgtgtgacgactactagtgatgatgtttgggttatgaaggagtatggaaataaagagtcttg 11081853  T
Q  919 gactaaatttttcactattccttacatgagagatccttctaaacctaaggcctttgcgaaggcattgtatacttttgaggatgatcaagtgttgctgaag 1018  Q
    ||||||||| || ||||||||||||||||||||||||||||||| | | | |||| | |||||| | ||||  ||||||||||||||||||||| |||||    
T  11081854 gactaaattgtttactattccttacatgagagatccttctaaacgtgatgtctttcccaaggcagtatatatatttgaggatgatcaagtgttgttgaag 11081953  T
Q  1019 tttatgaatgatattgacttgaatttggttcttta 1053  Q
    |||||||||||| |||||||||||||| |||||||    
T  11081954 tttatgaatgattttgacttgaatttgattcttta 11081988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 105; E-Value: 7e-52
Query Start/End: Original strand, 62 - 230
Target Start/End: Original strand, 11081379 - 11081547
Alignment:
Q  62 actcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatat 161  Q
    |||||||||| |||  |||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||| || |||| | ||||||    
T  11081379 actcttccttccgatctcattctagaaatcctatgtaggttaccggttaagttcatccttcgattccaatgtgtttgcaagtcgtgaaattctttaatat 11081478  T
Q  162 ccgatccaaaattcgtcaagaaacaactccgtgtgtccatcgctcggaacctccacttcctaaactaca 230  Q
    | ||||| ||||||||||||||||||||||||||||||  | |||| ||||||||||||||||||||||    
T  11081479 ctgatcccaaattcgtcaagaaacaactccgtgtgtccgccactcgaaacctccacttcctaaactaca 11081547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 868 - 937
Target Start/End: Complemental strand, 23766923 - 23766854
Alignment:
Q  868 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactatt 937  Q
    |||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  23766923 ttctggtaatgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23766854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 868 - 937
Target Start/End: Complemental strand, 23816771 - 23816702
Alignment:
Q  868 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactatt 937  Q
    |||||||  |||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  23816771 ttctggtaatgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattgttcactatt 23816702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 877 - 946
Target Start/End: Complemental strand, 23769698 - 23769629
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    |||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||| |||| ||||    
T  23769698 tgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctttcatg 23769629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 877 - 946
Target Start/End: Complemental strand, 23819546 - 23819477
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    |||||||||| |||||||||||||||| ||||||| ||||||||||||||| |||||||| |||| ||||    
T  23819546 tgatgtttggattatgaaggaatatgggaataaagcgtcttggactaaattgttcactatacctttcatg 23819477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 744 - 943
Target Start/End: Complemental strand, 1427878 - 1427679
Alignment:
Q  744 gctttattgtttcatttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggttttgggtgt 843  Q
    ||||||||||| | ||||||||||  |||||||||||||||||| |||  | ||| |||   ||||| || |||||  ||| ||| |||   ||||||||    
T  1427878 gctttattgttgcttttgatttggggaaggagtcttatcaaaaggttttgcttccaaatcgtggaggagtagatgtgagtggcttctcgaccttgggtgt 1427779  T
Q  844 tttgagggattgcttatgcgtgacttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttac 943  Q
    | | |||| || ||| | | || ||| ||||| |||||||||||||||||| || |||||||||| ||||||||||| |||| | ||||| ||| |||||    
T  1427778 tctaaggggtttcttgtccttgtcttatggtgatgatgtttgggttatgaaagagtatggaaatacagagtcttggattaaactgttcacaatttcttac 1427679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 878 - 927
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| |||||||||||||||||| |||||||||||||||||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 877 - 941
Target Start/End: Original strand, 23732166 - 23732230
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcctt 941  Q
    |||||||||| |||||||||||||||| ||||||| |||||||| |||| | |||||||||||||    
T  23732166 tgatgtttggattatgaaggaatatgggaataaagcgtcttggaataaactgttcactattcctt 23732230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 877 - 927
Target Start/End: Original strand, 3181716 - 3181766
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||||| |||||||||||||||||||| |||||||||||| ||||||    
T  3181716 tgatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaatt 3181766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 878 - 927
Target Start/End: Original strand, 20301443 - 20301492
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| ||||||||||||||| || |||||||||||||||||||||    
T  20301443 gatgtttggattatgaaggaatatgcaattaaagagtcttggactaaatt 20301492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 878 - 927
Target Start/End: Original strand, 20305856 - 20305905
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  20305856 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20305905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 878 - 927
Target Start/End: Original strand, 20310260 - 20310309
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||| ||| |||||||||||||||||| |||||||||||||||||||||    
T  20310260 gatgtctggattatgaaggaatatggaattaaagagtcttggactaaatt 20310309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 877 - 946
Target Start/End: Complemental strand, 23861078 - 23861009
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    |||||||||| | |||||||||||||| |  |||| ||||||||||||||| ||||||||||||| ||||    
T  23861078 tgatgtttggataatgaaggaatatgggatgaaagcgtcttggactaaattgttcactattcctttcatg 23861009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 877 - 925
Target Start/End: Complemental strand, 41973522 - 41973474
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaa 925  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  41973522 tgatgtttgggttatgaaggaatatgaaaataaagtgtcatggactaaa 41973474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 491 - 545
Target Start/End: Complemental strand, 2067511 - 2067457
Alignment:
Q  491 atgacgtttggctttggctatgattctttaaacgataattacaaggtggttgttg 545  Q
    ||||||||||| ||||||||||||||||| |  |||| |||||||||||||||||    
T  2067511 atgacgtttggttttggctatgattcttttagagatacttacaaggtggttgttg 2067457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 877 - 946
Target Start/End: Complemental strand, 23764312 - 23764243
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    |||||||||| | |||||||||||||| |  |||| ||||||||||| ||| ||||||||||||| ||||    
T  23764312 tgatgtttggataatgaaggaatatgggatgaaagcgtcttggactacattgttcactattcctttcatg 23764243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 877 - 946
Target Start/End: Complemental strand, 23814145 - 23814076
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    |||||||||| | |||||||||||||| |  | || ||||||||||||||| ||||||||||||| ||||    
T  23814145 tgatgtttggataatgaaggaatatgggatgacagcgtcttggactaaattgttcactattcctttcatg 23814076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 739 - 790
Target Start/End: Complemental strand, 2067260 - 2067209
Alignment:
Q  739 tccacgctttattgtttcatttgatttggcaaaggagtcttatcaaaagatt 790  Q
    |||| ||||||||||||||| ||||||||  || ||||||||||||||||||    
T  2067260 tccaagctttattgtttcatatgatttggggaaagagtcttatcaaaagatt 2067209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 878 - 927
Target Start/End: Complemental strand, 6401817 - 6401768
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| |||||||||||| || ||||| |||||| |||||||||||    
T  6401817 gatgtttggcttatgaaggaatttgaaaatagagagtcatggactaaatt 6401768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 51; Significance: 1e-19; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 876 - 946
Target Start/End: Original strand, 89141 - 89211
Alignment:
Q  876 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||| | || | |||||||||||    
T  89141 ttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattgtacaatgttccttacatg 89211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 3e-17; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 876 - 946
Target Start/End: Original strand, 39298975 - 39299045
Alignment:
Q  876 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    |||||||||||||| ||||||||| ||||||||||||||| ||||||||||||| || | |||||||||||    
T  39298975 ttgatgtttgggttttgaaggaatgtggaaataaagagtcctggactaaattttacagtgttccttacatg 39299045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 878 - 955
Target Start/End: Complemental strand, 1078211 - 1078134
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagatcct 955  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||||||| |||| | || |||||| | ||||||||    
T  1078211 gatgtttgggttatgaaggagtatggaaatagagagtcgtggactaaattgttcaatgtttcttacaggggagatcct 1078134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 738 - 880
Target Start/End: Complemental strand, 1078369 - 1078227
Alignment:
Q  738 gtccacgctttattgtttcatttgatttggcaaaggagtcttatcaaaagatttcacctcctaatttgggaggggtggatgttggtgacttgtcggtttt 837  Q
    |||| |||||||||||||| |||||||||| ||| || |||||||||||| |||  |||||| |||  |||||||| |||||  || |||| |  |  ||    
T  1078369 gtcctcgctttattgtttcttttgatttgggaaaagaatcttatcaaaaggttttgcctcctgattatggaggggtagatgtgtgtcacttcttagcctt 1078270  T
Q  838 gggtgttttgagggattgcttatgcgtgacttctggtgttgat 880  Q
    |||||| |||||||||||||| ||| || ||||| ||| ||||    
T  1078269 gggtgtgttgagggattgcttgtgcctggcttctcgtgatgat 1078227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 877 - 927
Target Start/End: Complemental strand, 1421221 - 1421171
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  1421221 tgatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 1421171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 493 - 547
Target Start/End: Complemental strand, 1078620 - 1078566
Alignment:
Q  493 gacgtttggctttggctatgattctttaaacgataattacaaggtggttgttgtt 547  Q
    |||| ||||||||||||| |||||||| | ||| |||||||||||||||||||||    
T  1078620 gacgcttggctttggctacgattcttttaccgagaattacaaggtggttgttgtt 1078566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 882 - 927
Target Start/End: Original strand, 3927063 - 3927108
Alignment:
Q  882 tttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||||||||||| |||||||||||| | ||||||||||||||    
T  3927063 tttgggttatgaaggattatggaaataaaaattcttggactaaatt 3927108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 868 - 946
Target Start/End: Complemental strand, 22672188 - 22672110
Alignment:
Q  868 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    ||||||||  || |||||||| |||||||||||||||||||| || |||||||||||||| ||||||||| ||||||||    
T  22672188 ttctggtgacgacgtttgggtaatgaaggaatatggaaataaggaatcttggactaaattgttcactatttcttacatg 22672110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 868 - 955
Target Start/End: Complemental strand, 20019833 - 20019746
Alignment:
Q  868 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagatcct 955  Q
    |||||||  |||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||| || || |||||  |||||||    
T  20019833 ttctggtaatgatgtttgggtcatgaaggaatatggaattcaagagtcttggactaaattgttcactctttctaacatgcaagatcct 20019746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 497 - 547
Target Start/End: Complemental strand, 20020201 - 20020151
Alignment:
Q  497 tttggctttggctatgattctttaaacgataattacaaggtggttgttgtt 547  Q
    |||||||||||||||||||||| ||  || |||||||||||||||||||||    
T  20020201 tttggctttggctatgattcttcaacggacaattacaaggtggttgttgtt 20020151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 878 - 927
Target Start/End: Original strand, 11032910 - 11032959
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| | ||||||||||| ||||||||||||||||||| ||||||    
T  11032910 gatgtttggctcatgaaggaatacggaaataaagagtcttggattaaatt 11032959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 890 - 934
Target Start/End: Complemental strand, 20016224 - 20016180
Alignment:
Q  890 atgaaggaatatggaaataaagagtcttggactaaatttttcact 934  Q
    |||||||||||||||| | ||||||||||||||||||| ||||||    
T  20016224 atgaaggaatatggaattcaagagtcttggactaaattgttcact 20016180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 888 - 939
Target Start/End: Original strand, 55419792 - 55419843
Alignment:
Q  888 ttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcc 939  Q
    |||||||||  |||||||||||||| |||||||||||||| || ||||||||    
T  55419792 ttatgaaggtttatggaaataaagattcttggactaaattgtttactattcc 55419843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 51 - 152
Target Start/End: Complemental strand, 20020653 - 20020552
Alignment:
Q  51 attcacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaa 150  Q
    |||||||||| | |||||||| |||| |||||  |||||| || ||||||||||| || ||| || |||||| | | |||||||| || || ||||||||    
T  20020653 attcacttcccattcttcctttcgacctcattgaagaaattctgtgtaggttaccagtgaagctcctccttcaacttcgatgtgtatgtaattcatggaa 20020554  T
Q  151 tt 152  Q
    ||    
T  20020553 tt 20020552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 868 - 945
Target Start/End: Original strand, 19727871 - 19727948
Alignment:
Q  868 ttctggtgttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacat 945  Q
    |||||||| |||||||||||||||||  ||||||| |||||||||||| ||||||||| | ||||||||| |||||||    
T  19727871 ttctggtgatgatgtttgggttatgacagaatatgcaaataaagagtcatggactaaactgttcactatttcttacat 19727948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 53 - 186
Target Start/End: Original strand, 19727108 - 19727241
Alignment:
Q  53 tcacttccaactcttccttacgacgtcattccagaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaatt 152  Q
    |||||||| |||||||||| |||  ||||||||||||| ||| ||||| |||| || || ||| || | |  |||||||||||||||||||| | |||||    
T  19727108 tcacttcctactcttcctttcgatctcattccagaaattctaagtaggctacccgtgaaattcctcttgcagttccgatgtgtttgcaagtcgttgaatt 19727207  T
Q  153 ttctaatatccgatccaaaattcgtcaagaaaca 186  Q
     |||||| || ||||  ||||||| ||| |||||    
T  19727208 ctctaatctctgatcacaaattcgccaacaaaca 19727241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 1e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 877 - 946
Target Start/End: Complemental strand, 51381507 - 51381438
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    |||| ||||| ||||||| |||||||||||| ||||||||||||||||||| |||| |||||||||||||    
T  51381507 tgatatttggattatgaaagaatatggaaatgaagagtcttggactaaattgttcagtattccttacatg 51381438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 876 - 928
Target Start/End: Complemental strand, 23896190 - 23896138
Alignment:
Q  876 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattt 928  Q
    ||||||||||| ||||||||||||||||||||||||||||||||  |||||||    
T  23896190 ttgatgtttggcttatgaaggaatatggaaataaagagtcttgggttaaattt 23896138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 878 - 927
Target Start/End: Complemental strand, 24629262 - 24629213
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| ||||||||||||| ||||||||||||||||||| ||||||    
T  24629262 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 162
Target Start/End: Complemental strand, 25611830 - 25611754
Alignment:
Q  86 gaaatcctatgtaggttaccggtaaagttcatccttcgattccgatgtgtttgcaagtcatggaattttctaatatc 162  Q
    |||||||| |||||| | ||||| |||||| |||||| |||| | || || |||||||||||||||| |||||||||    
T  25611830 gaaatcctttgtaggctcccggtcaagttcctccttcaattctgttgcgtctgcaagtcatggaattctctaatatc 25611754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 877 - 920
Target Start/End: Complemental strand, 24246549 - 24246506
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttgga 920  Q
    |||||||||| ||||||| ||||| |||||||||||||||||||    
T  24246549 tgatgtttggcttatgaaagaatacggaaataaagagtcttgga 24246506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 876 - 927
Target Start/End: Original strand, 25478863 - 25478914
Alignment:
Q  876 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||||| ||||||||||||| || |||||||| ||||||| ||||||    
T  25478863 ttgatgtttggcttatgaaggaatacggtaataaagaatcttggattaaatt 25478914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 877 - 927
Target Start/End: Complemental strand, 24242909 - 24242859
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||||| ||||||||  ||| ||||||||||||||||||| ||||||    
T  24242909 tgatgtttggcttatgaagatatacggaaataaagagtcttggattaaatt 24242859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 877 - 927
Target Start/End: Original strand, 51782798 - 51782848
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||||| |||||||||||||||||||| || | ||||||| ||||||    
T  51782798 tgatgtttggattatgaaggaatatggaaatgaacaatcttggaataaatt 51782848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 877 - 927
Target Start/End: Original strand, 51858605 - 51858655
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||||| | ||||||||||||||||||  ||| ||||||||||||||    
T  51858605 tgatgtttggatcatgaaggaatatggaaatgtagaatcttggactaaatt 51858655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 878 - 927
Target Start/End: Original strand, 36577366 - 36577415
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaatt 36577415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 878 - 923
Target Start/End: Original strand, 33026657 - 33026702
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggacta 923  Q
    |||||||||||||||||| |||||||||||||| ||||||||||||    
T  33026657 gatgtttgggttatgaagcaatatggaaataaaaagtcttggacta 33026702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 878 - 953
Target Start/End: Complemental strand, 7160805 - 7160730
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagatc 953  Q
    ||||||||| |||||||||| ||||||||||| || |||||||||||||| |||  | ||||| |||||| |||||    
T  7160805 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattgttccgtcttcctcacatgaaagatc 7160730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 881 - 952
Target Start/End: Complemental strand, 7168738 - 7168667
Alignment:
Q  881 gtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagat 952  Q
    |||||| |||||||||||||||||||||| || |||||||||||||| |||    ||||||||||| |||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattgttccgagttccttacatgggagat 7168667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 876 - 923
Target Start/End: Original strand, 33038158 - 33038205
Alignment:
Q  876 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggacta 923  Q
    ||||||||||| ||||||||||||||||||| ||| ||||||||||||    
T  33038158 ttgatgtttggattatgaaggaatatggaaacaaaaagtcttggacta 33038205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 878 - 952
Target Start/End: Complemental strand, 7156243 - 7156169
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatgagagat 952  Q
    ||||||||| |||||||||| ||||||||| |||| |||||| ||||||| |||  | ||||||||||| |||||    
T  7156243 gatgtttggcttatgaaggagtatggaaatgaagattcttgggctaaattgttccgtgttccttacatgggagat 7156169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 888 - 932
Target Start/End: Original strand, 6538844 - 6538888
Alignment:
Q  888 ttatgaaggaatatggaaataaagagtcttggactaaatttttca 932  Q
    |||||||||| |||||||||||||| |||||||||||||| ||||    
T  6538844 ttatgaaggagtatggaaataaagattcttggactaaattgttca 6538888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 878 - 946
Target Start/End: Complemental strand, 7174424 - 7174356
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattccttacatg 946  Q
    ||||| ||| |||||||||||||||||||| |||| |||||||||| ||| |||  | |||||||||||    
T  7174424 gatgtctggcttatgaaggaatatggaaatcaagattcttggactagattgttccgtgttccttacatg 7174356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 879 - 923
Target Start/End: Original strand, 33020314 - 33020358
Alignment:
Q  879 atgtttgggttatgaaggaatatggaaataaagagtcttggacta 923  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||    
T  33020314 atgtgtggattatgaaggaatatggaaataaaaagtcttggacta 33020358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 878 - 927
Target Start/End: Complemental strand, 34570520 - 34570471
Alignment:
Q  878 gatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||||||||| ||||||||||||||||| ||| ||  ||||||||    
T  34570520 gatgtttgggttatggaggaatatggaaataaaaagtattcaactaaatt 34570471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 876 - 927
Target Start/End: Complemental strand, 32382 - 32331
Alignment:
Q  876 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||| ||||||    
T  32382 ttgatgtttggcttatgaaggaatatggaaataaagactcttggattaaatt 32331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 877 - 927
Target Start/End: Complemental strand, 40433 - 40383
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||||| ||||||||||||||| ||||||||| ||||||| ||||||    
T  40433 tgatgtttggcttatgaaggaatatgaaaataaagactcttggattaaatt 40383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0200 (Bit Score: 37; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 877 - 925
Target Start/End: Complemental strand, 830 - 782
Alignment:
Q  877 tgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaa 925  Q
    |||||||||||||||||||||||||| |||||||| ||| |||||||||    
T  830 tgatgtttgggttatgaaggaatatgaaaataaagtgtcatggactaaa 782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 881 - 937
Target Start/End: Complemental strand, 370833 - 370777
Alignment:
Q  881 gtttgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactatt 937  Q
    ||||||||||||||| | |||||||||||||| |||||||||||||| |||| ||||    
T  370833 gtttgggttatgaagaattatggaaataaagattcttggactaaattgttcaatatt 370777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 879 - 927
Target Start/End: Complemental strand, 24417536 - 24417488
Alignment:
Q  879 atgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    |||||||| ||||||| ||||||||||||||||| ||||||||||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaatt 24417488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 884 - 939
Target Start/End: Complemental strand, 1442153 - 1442098
Alignment:
Q  884 tgggttatgaaggaatatggaaataaagagtcttggactaaatttttcactattcc 939  Q
    |||||||||||||| ||||||| |||||| |||||||||||||| |||||| ||||    
T  1442153 tgggttatgaaggattatggaattaaagattcttggactaaattgttcactgttcc 1442098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 880 - 927
Target Start/End: Original strand, 19119065 - 19119112
Alignment:
Q  880 tgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||| | |||||||||||||||||| |||||||||||||||||||    
T  19119065 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaatt 19119112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 880 - 927
Target Start/End: Original strand, 19126359 - 19126406
Alignment:
Q  880 tgtttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||| | |||||||||||||||||| |||||||||||||||||||    
T  19126359 tgtttggttgatgaaggaatatggaaatgaagagtcttggactaaatt 19126406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 882 - 928
Target Start/End: Complemental strand, 9819876 - 9819830
Alignment:
Q  882 tttgggttatgaaggaatatggaaataaagagtcttggactaaattt 928  Q
    ||||| ||||||||||||||||||||| ||| |||||||||||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaattt 9819830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 889 - 939
Target Start/End: Original strand, 176345 - 176395
Alignment:
Q  889 tatgaaggaatatggaaataaagagtcttggactaaatttttcactattcc 939  Q
    |||||| || |||||||||||||| |||||||||||||| |||||| ||||    
T  176345 tatgaatgattatggaaataaagattcttggactaaattgttcactcttcc 176395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 882 - 932
Target Start/End: Complemental strand, 7564798 - 7564748
Alignment:
Q  882 tttgggttatgaaggaatatggaaataaagagtcttggactaaatttttca 932  Q
    |||||||||||||||| |||||||| || || |||||||||||||| ||||    
T  7564798 tttgggttatgaaggattatggaaacaaggattcttggactaaattgttca 7564748  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 882 - 928
Target Start/End: Complemental strand, 9825562 - 9825516
Alignment:
Q  882 tttgggttatgaaggaatatggaaataaagagtcttggactaaattt 928  Q
    ||||| ||||||||||||||||||||| | | |||||||||||||||    
T  9825562 tttggcttatgaaggaatatggaaatagaaactcttggactaaattt 9825516  T

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Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 882 - 927
Target Start/End: Complemental strand, 1459588 - 1459543
Alignment:
Q  882 tttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||||||| || | |||||||||||| ||||||||||||||    
T  1459588 tttgggttatgaaagattttggaaataaagaatcttggactaaatt 1459543  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 882 - 927
Target Start/End: Complemental strand, 1470970 - 1470925
Alignment:
Q  882 tttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||||||||||| || |||||||||||||| |||||| |||||||    
T  1470970 tttgggttatgaaagattatggaaataaagattcttggtctaaatt 1470925  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 882 - 927
Target Start/End: Complemental strand, 9703933 - 9703888
Alignment:
Q  882 tttgggttatgaaggaatatggaaataaagagtcttggactaaatt 927  Q
    ||||| ||||||||||||||||||||| ||| | ||||||||||||    
T  9703933 tttggcttatgaaggaatatggaaatagagatttttggactaaatt 9703888  T

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Target: scaffold1004 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold1004
Description:

Target: scaffold1004; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 879 - 926
Target Start/End: Original strand, 2144 - 2191
Alignment:
Q  879 atgtttgggttatgaaggaatatggaaataaagagtcttggactaaat 926  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||||    
T  2144 atgtttgggctatgaaggaatatggaaatgtagagtcttggactaaat 2191  T

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Target: scaffold0760 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0760
Description:

Target: scaffold0760; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 879 - 926
Target Start/End: Original strand, 4639 - 4686
Alignment:
Q  879 atgtttgggttatgaaggaatatggaaataaagagtcttggactaaat 926  Q
    ||||||||| |||||||||||||||||||  |||||||||||||||||    
T  4639 atgtttgggctatgaaggaatatggaaatgtagagtcttggactaaat 4686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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