View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9600_3 (Length: 536)
Name: NF9600_3
Description: NF9600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9600_3 |
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Alignment Details
Target: chr6 (Bit Score: 438; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 21 - 507
Target Start/End: Complemental strand, 14914489 - 14914003
Alignment:
| Q |
21 |
acatcatcaagaacaacagtaaactcaagcttgttctgagctagagagcccattgtaaatagagtcttctccccgtcgtaagcaaagtcttttcctctaa |
120 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14914489 |
acatcttcaagaacaacagtaaactcaagcttgttctgagctagagagcccattgtaaatagagtcttctccccgtcgtaagcaaagtcttttcctctaa |
14914390 |
T |
|
| Q |
121 |
gctcagaatcataagnnnnnnnaactttatcaagtatcttcctaccagcaccgctcgcttcaaccaggcatccatcttcataaaatatagcaacccgcac |
220 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
14914389 |
gctcagaatcataagtttttttaactttatcaagtatcttcctaccagcaccgctcgcttcaaccgggcatccatcttcataaaatatagcaacctgcac |
14914290 |
T |
|
| Q |
221 |
caattcatggcatgagccaacacttagcgaaaacttatacacatatattagtaacaaatcaactgaattttgaaatacgatgcatacattgtactgaaag |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14914289 |
caattcatggcatgagccaacacttagcgaaaacttatacacatatattagtaacaaatcaactgaattttgaaatacgatgcatacattgtactgaaag |
14914190 |
T |
|
| Q |
321 |
aaaaacccatcggtgttagcagcattcactttaaagtgatttgttaacaaagaaagtttatttcccattgttcctaggccacgtctagccatcggaactt |
420 |
Q |
| |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
14914189 |
aaaaacccatcggtgttagcggcattcactttaaagtgatttgttaacaaagacagtttatttcccgttgttcctaggccacgtctagccatcggaactt |
14914090 |
T |
|
| Q |
421 |
tagttagaagcttcttctttacatgctcttgttcaataattactggtttaacatttcgaggaacagtgggaggtggtgggggaaaag |
507 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14914089 |
tagatagaagcttcttctttacatgctcttgttcaataattactggtttaacatttcgaggaacagtgggaggtggtgggggaaaag |
14914003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 1e-45; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 20 - 502
Target Start/End: Complemental strand, 38122114 - 38121638
Alignment:
| Q |
20 |
gacatcatcaagaacaacagtaaactcaagcttgttctgagctagagagcccattgtaaatagagtcttctccccgtcgtaagcaaagtcttttcctcta |
119 |
Q |
| |
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|||||| |||| ||||||| | ||||| ||||| ||||||||||||||||| ||||| || || |||| ||||||| ||||||| ||||||||| || |
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| T |
38122114 |
gacatcttcaacaacaacaatgaactcgagctttttctgagctagagagccgattgtgaacagggtct---ccccgtcataagcaaggtcttttccatta |
38122018 |
T |
|
| Q |
120 |
agctcagaatcataagnnnnnnnaactttatcaagtatcttcctaccagcaccgctcgcttcaaccaggcatccatcttcataaaatatagcaacccgca |
219 |
Q |
| |
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||||| |||||||| | |||||| |||| ||||||||| || || || || ||||||| | | ||| ||||||||||| | ||||||| ||| |
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| T |
38122017 |
agctcggaatcatatgtttcttgaactttgtcaattatcttcctcccggcgcctttcccttcaacaggacgtccgtcttcataaaacaaagcaacctgca |
38121918 |
T |
|
| Q |
220 |
ccaattcatggcatgagccaacacttagcgaaaacttatacacatatattagtaacaaatcaactgaattttgaaatacgatgcatacattgtactgaaa |
319 |
Q |
| |
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| ||| ||| | | ||||||||| | | |||| | ||||| || || | || ||| ||||||||| | |||||| | |||||| |||||||||| |
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| T |
38121917 |
caaatacatagtacgagccaaca---aacaaaaaaattaacacaaatgttcgcaagaaaacaactgaatcataaaatacaaaacatacactgtactgaaa |
38121821 |
T |
|
| Q |
320 |
gaaaaacccatcggtgttagcagcattcactttaaagtgatttgttaacaaagaaagtttatttcccattgttcctaggccacgtctagccatcggaact |
419 |
Q |
| |
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||||| || || ||||||||| ||||||||| |||||||||||||||||||| |||||| |||| | || ||||||||||| |||||||| ||| | |
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| T |
38121820 |
gaaaaccctatttgtgttagcaacattcacttcaaagtgatttgttaacaaaggcagtttagctcccttcgtccctaggccacgcctagccattggagcc |
38121721 |
T |
|
| Q |
420 |
ttagttagaagcttcttctttacatgctcttgttcaataattactggtttaacatttcgaggaacagtgggaggtggtggggg |
502 |
Q |
| |
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||||| ||||||||||||||| |||||| ||||| || ||| |||||||||||| | |||||| |||||||||||||||| |
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| T |
38121720 |
ttagtaggaagcttcttctttaaatgctcctgttctatctttattggtttaacattgggtggaacaatgggaggtggtggggg |
38121638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 21 - 215
Target Start/End: Complemental strand, 38113594 - 38113400
Alignment:
| Q |
21 |
acatcatcaagaacaacagtaaactcaagcttgttctgagctagagagcccattgtaaatagagtcttctccccgtcgtaagcaaagtcttttcctctaa |
120 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||||||||| || ||||| || ||||| |||||||||||||| || ||||||| |||||| || ||| |
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| T |
38113594 |
acatcttcaagaacaacagtaaattcaagcttgttctgagcaagtgagccaatagtaaacagagtcttctccccatcataagcaaggtctttcccgttaa |
38113495 |
T |
|
| Q |
121 |
gctcagaatcataagnnnnnnnaactttatcaagtatcttcctaccagcaccgctcgcttcaaccaggcatccatcttcataaaatatagcaacc |
215 |
Q |
| |
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|||| ||| |||||| |||| ||||||||||||||||||||||||| | ||||||| ||| ||||||||||||||| | ||||||| |
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| T |
38113494 |
gctcggaaccataagtttcttgaactctatcaagtatcttcctaccagcaccctttccttcaacagggcgtccatcttcataaaaaagagcaacc |
38113400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 305 - 361
Target Start/End: Complemental strand, 38113304 - 38113248
Alignment:
| Q |
305 |
tacattgtactgaaagaaaaacccatcggtgttagcagcattcactttaaagtgatt |
361 |
Q |
| |
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|||| |||||||||||||| | ||||| ||||| | | ||||||||||||||||||| |
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|
| T |
38113304 |
tacactgtactgaaagaaataaccatcagtgttggtaacattcactttaaagtgatt |
38113248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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