View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9600_9 (Length: 337)
Name: NF9600_9
Description: NF9600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9600_9 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 162 - 337
Target Start/End: Original strand, 6175582 - 6175753
Alignment:
| Q |
162 |
attattgtggcgcgtggggtgttggtgatagtgagtagcgtgaaatgatatgatacaaaacccgcacacaaatctttcctccataccatgtccatgtcca |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6175582 |
attattgtggcgcgtggggtgttggtgatagtgagtagcgtgaaatgatatgatacaaaacccgcacacaaatctttcctccataccatgtccatgtcca |
6175681 |
T |
|
| Q |
262 |
tgtccttctcttcccattccatgccatggatttgtgaaagtatcatcaactaactagttatagttgttgcataatg |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
6175682 |
tgtccttctcttcccattccatgccatggatttgtgaaagtatcatc----aactagttatagttgttgcataatg |
6175753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 25 - 139
Target Start/End: Original strand, 6174906 - 6175020
Alignment:
| Q |
25 |
catcaaatatcaatatactcaaaattacttccttcgtgttatactatatgacacaattaactttgtcacacatgccaatgtgcaattttgattttaaata |
124 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6174906 |
catcaaatatcaatatactcaaaattacttccttcgtgttatactatatgacacaattaactttgtcacacatgccaatgtgcaattttgattttaaata |
6175005 |
T |
|
| Q |
125 |
tatttaataatttat |
139 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6175006 |
tatttaataatttat |
6175020 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 23591208 - 23591239
Alignment:
| Q |
108 |
aattttgattttaaatatatttaataatttat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23591208 |
aattttgattttaaatatatttaataatttat |
23591239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 139
Target Start/End: Original strand, 23591476 - 23591507
Alignment:
| Q |
108 |
aattttgattttaaatatatttaataatttat |
139 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
23591476 |
aattttgattttaaatatatttaataatttat |
23591507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University