View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9600_low_2 (Length: 402)
Name: NF9600_low_2
Description: NF9600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9600_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 275; Significance: 1e-154; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 688364 - 688073
Alignment:
| Q |
1 |
ataagcacaattttgaatgtttatgtagatgttacagaagttccggatttactcggtgattatttaggtggtgttataaattttacctcaacaactactt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
688364 |
ataagcacaattttgaatgtttatgtagatgttacagaagttccggatttacttggtgattatttaggtggtgttataaattttacctcaacaactactt |
688265 |
T |
|
| Q |
101 |
tagtaggtaaagtcaagatatttaatttcataaagatcaaagccacaacttactccacttgtgatatttttgtatacatacatggccaaattgccaattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
688264 |
tagtaggtaaagtcaagatatttaatttcataaagatcaaagccacaacttactccacttgtgatatttttgtatacatacatggccaaattgccaattc |
688165 |
T |
|
| Q |
201 |
aacctgcgacaataaaatcaaattctgaatattgtttctattgttggaacctcactattactatatattattgttagttattattattccgattca |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
688164 |
aacctgcgacaataaaatcaaattctgaatattgtttctattgttggaacctcactattac----tattattgttagttattattattccgattca |
688073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 292 - 388
Target Start/End: Complemental strand, 688047 - 687951
Alignment:
| Q |
292 |
attcattcatttgtactgcggataaagtttctgactagtaattgatttaactcactgaaatggaagcttgtttgttgcttatatattttctgatctg |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
688047 |
attcattcatttgtactgcggataaagtttctgactagtaattgatttaactcactgaaatggaagcttgtttgttgcttatatattttctgatctg |
687951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University