View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9600_low_3 (Length: 227)
Name: NF9600_low_3
Description: NF9600
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9600_low_3 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 29500607 - 29500834
Alignment:
| Q |
1 |
tcacaatttcaccttccataatccattttttcttctataaaa-attcaatttctctcacccaatcaaaaccatatattattatcaacattttatttttca |
99 |
Q |
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| T |
29500607 |
tcacaattttaccttccataatccattttttcttctataaaaaattcaatttctctcacccaatcaaaaccatatattattatcaacattttatttttca |
29500706 |
T |
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| Q |
100 |
ttcttcctttcttgcccgaccatctgagtatagaacgatccctacatctcctcctccaccatcgcttgacagttattttccatttttgtcctttcaagct |
199 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
29500707 |
ttcttcctttcttgcacgaccatctgagtatagaacgatccctacatctcctcctccaccatcgcttgacagttattttccatatttgtcctttcaagct |
29500806 |
T |
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| Q |
200 |
ttaagccgtagaacaaaaaacaatggtt |
227 |
Q |
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| |||||||||||||||||||||||||| |
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| T |
29500807 |
tcaagccgtagaacaaaaaacaatggtt |
29500834 |
T |
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