View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9601_high_2 (Length: 356)

Name: NF9601_high_2
Description: NF9601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9601_high_2
NF9601_high_2
[»] chr3 (11 HSPs)
chr3 (16-349)||(42433408-42433741)
chr3 (53-336)||(557386-557664)
chr3 (245-334)||(8819373-8819463)
chr3 (239-332)||(9192326-9192420)
chr3 (245-334)||(30499011-30499101)
chr3 (246-334)||(26373389-26373478)
chr3 (268-334)||(47720898-47720965)
chr3 (251-307)||(35695169-35695225)
chr3 (251-334)||(28541481-28541564)
chr3 (243-334)||(43335268-43335360)
chr3 (129-177)||(9192482-9192530)
[»] chr2 (5 HSPs)
chr2 (60-349)||(17303340-17303629)
chr2 (207-334)||(33050833-33050961)
chr2 (251-337)||(44742186-44742273)
chr2 (234-333)||(25221726-25221823)
chr2 (251-333)||(31055542-31055623)
[»] chr4 (8 HSPs)
chr4 (53-334)||(22065597-22065877)
chr4 (152-334)||(20626624-20626807)
chr4 (239-334)||(23096509-23096605)
chr4 (241-334)||(12328406-12328500)
chr4 (251-305)||(51267467-51267521)
chr4 (245-325)||(30257590-30257671)
chr4 (251-322)||(7784776-7784847)
chr4 (288-348)||(50300487-50300547)
[»] chr7 (4 HSPs)
chr7 (61-334)||(47810491-47810754)
chr7 (286-325)||(43574029-43574068)
chr7 (251-334)||(22575191-22575279)
chr7 (211-288)||(1763454-1763531)
[»] chr6 (3 HSPs)
chr6 (153-334)||(31750137-31750317)
chr6 (251-333)||(1717616-1717698)
chr6 (255-334)||(24439407-24439486)
[»] scaffold0445 (1 HSPs)
scaffold0445 (245-334)||(10389-10479)
[»] chr5 (8 HSPs)
chr5 (149-334)||(3925438-3925624)
chr5 (252-334)||(35078051-35078134)
chr5 (245-335)||(5215099-5215190)
chr5 (272-325)||(18012884-18012938)
chr5 (246-334)||(4157574-4157663)
chr5 (245-325)||(24099591-24099672)
chr5 (239-307)||(35193232-35193301)
chr5 (251-334)||(19932330-19932413)
[»] scaffold0042 (1 HSPs)
scaffold0042 (246-334)||(31129-31218)
[»] chr1 (6 HSPs)
chr1 (271-334)||(43031359-43031422)
chr1 (251-334)||(14635747-14635829)
chr1 (245-340)||(8881428-8881524)
chr1 (286-334)||(23043551-23043599)
chr1 (251-298)||(33350378-33350426)
chr1 (245-305)||(32365991-32366052)


Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 349
Target Start/End: Complemental strand, 42433741 - 42433408
Alignment:
Q  16 agagacttcgagtggtggtagttatggactttttgttccgaaagggtgtggttcttttaatcccgaaagggttgttagggttctttgcaatcggttgagt 115  Q
    |||||||||| |||||||||||||||||||||||||   ||     | ||||| |  ||| |||||||||||||||||| ||||||||||||||||||||    
T  42433741 agagacttcgggtggtggtagttatggactttttgtggtga-----tttggtt-tcataaacccgaaagggttgttaggattctttgcaatcggttgagt 42433648  T
Q  116 tggtgttcatgtgtgtttgactccctgaagtttcaggtctgttgagatttgcaggcctcaagtcttcaaggttacctcctctt-----tggttct-acct 209  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||      || |||| ||||    
T  42433647 tggtgttcttgtgtgtttgactccctgaagtttcaggtctgttgagatctgcaggcctcaagtcttcaaggttacctcctctcctctctgattctgacct 42433548  T
Q  210 cttatccatctcagtcaatgtggctgttatcggattgttaagctcgaaagagctattatacctgctgctttgttcaggggttgctggtacgtggatctcg 309  Q
    ||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42433547 cttatccatcttagtcaatgtggctgttatcggactgttaagttcgaaagagctattatacctgctgctttgttcaggggttgctggtacgtggatctcg 42433448  T
Q  310 ataccgtgttggcggtggatccatttgctaattataaacc 349  Q
    ||||||||||||||||||||||||| |  |||||||||||    
T  42433447 ataccgtgttggcggtggatccattcgtcaattataaacc 42433408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 53 - 336
Target Start/End: Original strand, 557386 - 557664
Alignment:
Q  53 ccgaaagggtgtggttcttttaatcccgaaagggttgttagggttctttgcaatcggttgagttggtgttcatgtgtgtttgactccctgaagtttcagg 152  Q
    |||||||||| |||||||||||| | ||||||||||||| ||||||||||||||||||||| || ||  || ||||   ||| ||| |||| ||| ||||    
T  557386 ccgaaagggtttggttcttttaa-ctcgaaagggttgttcgggttctttgcaatcggttgattttgtactcttgtgc--ttg-ctctctgatgttccagg 557481  T
Q  153 tctgttgagatttgcaggcctcaagtcttcaaggttacctcctctttggttctacctcttatccatctcagtcaatgtggctgttatcggattgttaagc 252  Q
    ||||||||||| ||||||| ||||||||||| |||||| ||||||   ||  ||||| |||||||||||||||||||||  |||||||| | ||||||||    
T  557482 tctgttgagatctgcaggcttcaagtcttcagggttacgtcctctccagt--tacctgttatccatctcagtcaatgtgattgttatcgaactgttaagc 557579  T
Q  253 tcgaaagagctattatacctgctgctttgttca-ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatttg 336  Q
    ||||||||||||||||||||| || |||||||| ||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  557580 tcgaaagagctattatacctgatgttttgttcagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccatttg 557664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 8819463 - 8819373
Alignment:
Q  245 tgttaagctcgaaagagctattatacctgctgctttgttcag-gggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    ||||| |||| ||||||||| ||| ||||||| ||||||||| ||||||||||||||||||||| || ||||| |||||||||||||||||    
T  8819463 tgttatgctcaaaagagctactatgcctgctgatttgttcagtgggttgctggtacgtggatcttgaaaccgtattggcggtggatccatt 8819373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 239 - 332
Target Start/End: Complemental strand, 9192420 - 9192326
Alignment:
Q  239 tcggattgttaagctcgaaagagctattatacctgctgctttgttca-ggggttgctggtacgtggatctcgataccgtgttggcggtggatcca 332  Q
    ||||||||||| |||||||||||||||||| | || || |||||||| |||| ||||||||||||||| | |||||||||||||| || ||||||    
T  9192420 tcggattgttatgctcgaaagagctattattcttgttgttttgttcatggggctgctggtacgtggattttgataccgtgttggcagtcgatcca 9192326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 245 - 334
Target Start/End: Complemental strand, 30499101 - 30499011
Alignment:
Q  245 tgttaagctcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    ||||| |||||||||||||| ||| | || ||||||||| ||||| |||||||||| ||||||| || |||||||||||||| ||||||||    
T  30499101 tgttatgctcgaaagagctactatgcatgttgctttgttgagggggttgctggtacttggatcttgaaaccgtgttggcggtcgatccatt 30499011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 246 - 334
Target Start/End: Complemental strand, 26373478 - 26373389
Alignment:
Q  246 gttaagctcgaaagagctattatacctgctgctttgttcagg-ggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    |||| |||||||||||||||| | | || || |||||||| | |||||||||||||||||||| |||||||||||| |||| ||||||||    
T  26373478 gttatgctcgaaagagctattttgcttgttgttttgttcaagaggttgctggtacgtggatcttgataccgtgttgacggtcgatccatt 26373389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 334
Target Start/End: Original strand, 47720898 - 47720965
Alignment:
Q  268 tacctgctgctttgttcagggg-ttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    ||||||||| |||||||||||| ||| |||||||||||||| |||||| |||||||||| ||||||||    
T  47720898 tacctgctgttttgttcagggggttgttggtacgtggatcttgataccttgttggcggtcgatccatt 47720965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 251 - 307
Target Start/End: Original strand, 35695169 - 35695225
Alignment:
Q  251 gctcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggatct 307  Q
    ||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||    
T  35695169 gctcgaaagagct-ttatacctgctgctttgtttaggggattgctggtacgtggatct 35695225  T

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Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 28541564 - 28541481
Alignment:
Q  251 gctcgaaagagctattatacctgctgctttgttca-ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    |||||||||||||  ||| |||||| ||||||||| ||||||| |||||| ||||| | ||||||||||||||||| ||||||||    
T  28541564 gctcgaaagagctcctatgcctgctactttgttcagggggttgatggtacatggat-ttgataccgtgttggcggtcgatccatt 28541481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 334
Target Start/End: Complemental strand, 43335360 - 43335268
Alignment:
Q  243 attgttaagctcgaaagagctattatacctgctgctttgttcaggg-gttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    ||||||| ||||||||||||| |||||| || ||||||| |||||| |||| |||||||||||| | ||| | | ||||||||| | ||||||    
T  43335360 attgttatgctcgaaagagcttttatacttgttgctttggtcagggagttgttggtacgtggattttgattctgagttggcggttggtccatt 43335268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 177
Target Start/End: Complemental strand, 9192530 - 9192482
Alignment:
Q  129 tgtttgactccctgaagtttcaggtctgttgagatttgcaggcctcaag 177  Q
    ||||||| || |||| ||| |||||||||||||||||||||| ||||||    
T  9192530 tgtttgattctctgatgttccaggtctgttgagatttgcaggtctcaag 9192482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 180; Significance: 4e-97; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 60 - 349
Target Start/End: Original strand, 17303340 - 17303629
Alignment:
Q  60 ggtgtggttcttttaatcccgaaagggttgttagggttctttgcaatcggttgagttggtgttcatgtgtgtttgactccctgaagtttcaggtctgttg 159  Q
    |||||||| ||||||| ||| |||| |||||||||||||||||||||||||||||||| |||||||||||| ||||  || ||||||| |||||||||||    
T  17303340 ggtgtggtccttttaa-cccaaaagagttgttagggttctttgcaatcggttgagttgatgttcatgtgtgcttgaaacc-tgaagttccaggtctgttg 17303437  T
Q  160 agatttgcaggcctcaagtcttcaaggttacctcctctttggttct-acctcttatccatctcagtcaatgtggctgttatcggattgttaagctcgaaa 258  Q
    |||| ||||||| |||||||||||||||||||| |||| ||||||| ||||||||||||||||||||| |||| ||||||||||| ||||||||||||||    
T  17303438 agatctgcaggcttcaagtcttcaaggttaccttctctctggttctgacctcttatccatctcagtcattgtgactgttatcggactgttaagctcgaaa 17303537  T
Q  259 gagctattatacctgctgctttgttca-ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatttgctaattataaacc 349  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||||||| ||| || |||||||||||    
T  17303538 gagctattatacctgctgctttgttcagggggttgttggtacgtggatctcgatatcgtgttggcggtggatctattcgccaattataaacc 17303629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 207 - 334
Target Start/End: Complemental strand, 33050961 - 33050833
Alignment:
Q  207 cctcttatccatctcagtcaatgtggctgttatcggattgttaagctcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggat 305  Q
    ||||| ||| |||||||||| ||||  |||||||||| ||||||| | ||||| ||||||||||||||||||||||||||||| |  |||||||||||||    
T  33050961 cctctaatcgatctcagtcattgtgattgttatcggactgttaagtttgaaagggctattatacctgctgctttgttcaggggatcactggtacgtggat 33050862  T
Q  306 ctcgataccgtgttggcggtggatccatt 334  Q
     | ||||||||||||||||| ||||||||    
T  33050861 ttggataccgtgttggcggtcgatccatt 33050833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 251 - 337
Target Start/End: Original strand, 44742186 - 44742273
Alignment:
Q  251 gctcgaaagagctattatacctgctgctttgttcagg-ggttgctggtacgtggatctcgataccgtgttggcggtggatccatttgc 337  Q
    |||||||||||||||||| | || || |||||||||| |||||||||||||||||||| ||||| ||||||||| | |||| ||||||    
T  44742186 gctcgaaagagctattatgcatgttgttttgttcaggaggttgctggtacgtggatcttgatactgtgttggcgattgatctatttgc 44742273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 234 - 333
Target Start/End: Original strand, 25221726 - 25221823
Alignment:
Q  234 tgttatcggattgttaagctcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggatctcgataccgtgttggcggtggatcca 332  Q
    |||| ||||||||||  ||||||||||||| |||||||||||| |||||||||||| ||||||| |||||||||| | |||| || ||||||| ||||||    
T  25221726 tgttctcggattgtt--gctcgaaagagct-ttatacctgctgatttgttcagggggttgctggaacgtggatcttggtaccatgctggcggtcgatcca 25221822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 333
Target Start/End: Original strand, 31055542 - 31055623
Alignment:
Q  251 gctcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggatctcgataccgtgttggcggtggatccat 333  Q
    ||||||||||||| |||||||| ||||||| |||||||| |||||||  ||||||| | | ||||||||||||||| |||||||    
T  31055542 gctcgaaagagct-ttataccttctgcttttttcagggggttgctggaccgtggattt-gttaccgtgttggcggtcgatccat 31055623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 129; Significance: 1e-66; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 53 - 334
Target Start/End: Original strand, 22065597 - 22065877
Alignment:
Q  53 ccgaaagggtgtggttcttttaatcccgaaagggttgttagggttctttgcaatcggttgagttggtgttcatgtgtgtttgactccctgaagtttcagg 152  Q
    |||||||||| |||||||||||| ||||||||||||||| ||||||||||||||| ||||| || ||| || ||||   ||||||| |||| ||| ||||    
T  22065597 ccgaaagggtttggttcttttaa-cccgaaagggttgtttgggttctttgcaatccgttgattttgtgctcttgtgc--ttgactctctgatgttccagg 22065693  T
Q  153 tctgttgagatttgcaggcctcaagtcttcaaggttacctcctctttggttct-acctcttatccatctcagtcaatgtggctgttatcggattgttaag 251  Q
    ||||||||||| ||||||| ||||||||||| | |||| ||||||   ||||| |||| ||||||||||| |||||||||  |||||||||| |||||||    
T  22065694 tctgttgagatctgcaggcttcaagtcttcaggattacgtcctctccagttctgacctgttatccatctcggtcaatgtgattgttatcggactgttaag 22065793  T
Q  252 ctcgaaagagctattatacctgctgctttgttca-ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    ||||||| | |||||||||||||||||||||| | ||||||| |||||||||||||| ||||||||||||||||| ||||||||    
T  22065794 ctcgaaaaaactattatacctgctgctttgttaagggggttgttggtacgtggatcttgataccgtgttggcggtcgatccatt 22065877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 334
Target Start/End: Complemental strand, 20626807 - 20626624
Alignment:
Q  152 gtctgttgagatttgcaggcctcaagtcttcaaggttacctcctctttggttctacctctt---atccatctcagtcaatgtggctgttatcggattgtt 248  Q
    |||||||||||||||||||||  ||||||||| | |||||||||||| | | ||  || ||   |||||||| |||||    | ||||||||||| | ||    
T  20626807 gtctgttgagatttgcaggcc--aagtcttcaggattacctcctcttcgatactgtctttttatatccatcttagtcatatcgactgttatcggactatt 20626710  T
Q  249 aagctcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    |||||| ||||||||||| |||||||| ||| ||||||||| ||||| |||||||||||| ||||||||||||||||| ||||||||    
T  20626709 aagctcaaaagagctatt-tacctgctacttggttcagggggttgctagtacgtggatcttgataccgtgttggcggttgatccatt 20626624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 239 - 334
Target Start/End: Complemental strand, 23096605 - 23096509
Alignment:
Q  239 tcggattgttaagctcgaaagagctattatacctgctgctttgttcag-gggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    ||||||||||| |||||||||||||||||| | || || ||| ||||| ||| ||||||||||||||| | ||||||||||||||||| ||||||||    
T  23096605 tcggattgttatgctcgaaagagctattatgcatgttgttttattcagcgggatgctggtacgtggattttgataccgtgttggcggtcgatccatt 23096509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 334
Target Start/End: Original strand, 12328406 - 12328500
Alignment:
Q  241 ggattgttaagctcgaaagagctattatacctgctgctttgttca-ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    ||||||||| |||||||||||||||||| || ||||  ||||||| ||||||||||||| |||||||  |||||||| ||| |||| ||||||||    
T  12328406 ggattgttatgctcgaaagagctattatgccggctgtgttgttcagggggttgctggtatgtggatcgtgataccgtattgacggtcgatccatt 12328500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 51267467 - 51267521
Alignment:
Q  251 gctcgaaagagctattatacctgctgctttgttca-ggggttgctggtacgtggat 305  Q
    |||||||| |||| ||||||||||||||||||||| ||||||||||| ||||||||    
T  51267467 gctcgaaaaagct-ttatacctgctgctttgttcagggggttgctggaacgtggat 51267521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 30257590 - 30257671
Alignment:
Q  245 tgttaagctcgaaagagctattatacctgctgctttgttcaggg-gttgctggtacgtggatctcgataccgtgttggcggt 325  Q
    ||||| ||||||||||||| |||||| |||||||||| | |||| |||| | || ||||||| | ||| |||||||||||||    
T  30257590 tgttatgctcgaaagagcttttatacttgctgctttggttagggagttgtttgttcgtggatttggattccgtgttggcggt 30257671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 322
Target Start/End: Original strand, 7784776 - 7784847
Alignment:
Q  251 gctcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggatctcgataccgtgttggc 322  Q
    ||||||||||||  ||||||||||||||||| ||||||| ||||||| |||||||| | | ||||||| ||||    
T  7784776 gctcgaaagagcg-ttatacctgctgctttgctcaggggattgctggaacgtggattttgttaccgtgctggc 7784847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 348
Target Start/End: Complemental strand, 50300547 - 50300487
Alignment:
Q  288 ggttgctggtacgtggatctcgataccgtgttggcggtggatccatttgctaattataaac 348  Q
    |||||||| || |||||||| ||||||||||||| ||| |||||||| || |||| |||||    
T  50300547 ggttgctgatatgtggatcttgataccgtgttggtggtcgatccattcgccaattctaaac 50300487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 61 - 334
Target Start/End: Complemental strand, 47810754 - 47810491
Alignment:
Q  61 gtgtggttcttttaatcccgaaagggttgttagggttctttgcaatcggttgagttggtgttcatgtgtgtttgactccctgaagtttcaggtctgttga 160  Q
    ||||||||||||||| ||||||||||||||| |||||||||| |||||||||| |||||| |||||||   ||||||| |  | ||| ||||||||||||    
T  47810754 gtgtggttcttttaa-cccgaaagggttgtttgggttctttgaaatcggttgaattggtgctcatgtgc--ttgactctc--atgttccaggtctgttga 47810660  T
Q  161 gatttgcaggcctcaagtcttcaaggttacctcctctttggttctacctcttatccatctcagtcaatgtggctgttatcggattgttaagctcgaaaga 260  Q
    ||| ||||||||||||||||||| ||||||||  |||| ||| ||  |||| |||||||||||||| |||| ||||||| ||| ||||||||||||||||    
T  47810659 gatctgcaggcctcaagtcttcagggttacct--tcttcggtactgtctctaatccatctcagtcattgtgactgttattggactgttaagctcgaaaga 47810562  T
Q  261 gctattatacctgctgctttgttca-ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    | |||||||||||||||    |||| |||||||||  ||||||||||| |||| | ||||| |||| ||||||||    
T  47810561 gttattatacctgctgc----ttcagggggttgctaatacgtggatctggataacatgttgtcggtcgatccatt 47810491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 286 - 325
Target Start/End: Complemental strand, 43574068 - 43574029
Alignment:
Q  286 ggggttgctggtacgtggatctcgataccgtgttggcggt 325  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  43574068 ggggttgctggtacgtggatcttgataccgtgttggcggt 43574029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 22575279 - 22575191
Alignment:
Q  251 gctcgaaagagctattatacctgctgctttgttca-ggggttgctggtacgtgga---tctcgataccgtgttggc-ggtggatccatt 334  Q
    ||||||||||||  |||  |||||||||||||||| |||||||||||||||||||   ||| |||||||||||||| ||| ||||||||    
T  22575279 gctcgaaagagcatttacgcctgctgctttgttcagggggttgctggtacgtggatcttcttgataccgtgttggctggtcgatccatt 22575191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 1763531 - 1763454
Alignment:
Q  211 ttatccatctcagtcaatgtggctgttatcggattgttaagctcgaaagagctattatacctgctgctttgttcaggg 288  Q
    ||||| |||||||||  |||| || || || |||||||| ||||||||||||| |||||| | |||||||| ||||||    
T  1763531 ttatctatctcagtccttgtgactattctcagattgttatgctcgaaagagcttttatacttcctgctttgctcaggg 1763454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 3e-30; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 153 - 334
Target Start/End: Original strand, 31750137 - 31750317
Alignment:
Q  153 tctgttgagatttgcaggcctcaagtcttcaaggttacctcctctttggttctacctc-ttatccatctcagtcaatgtggctgttatcggattgttaag 251  Q
    ||||||||||| |||||| |||||||||||| ||| |||||||||  | | ||  ||  |||||||||||||| ||| || ||||||| |||||||   |    
T  31750137 tctgttgagatctgcaggtctcaagtcttcagggtcacctcctctccgatactgtcttattatccatctcagtaaatatgtctgttattggattgt---g 31750233  T
Q  252 ctcgaaagagctattatacctgctgctttgttca--ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    ||||||||||||||||||||||||||||| ||||  |||||||||||||||||||| | | ||||||||||||||| ||||||||    
T  31750234 ctcgaaagagctattatacctgctgctttattcaggggggttgctggtacgtggat-ttgttaccgtgttggcggtcgatccatt 31750317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 333
Target Start/End: Complemental strand, 1717698 - 1717616
Alignment:
Q  251 gctcgaaagagctattatacctgctgctttgttca-ggggttgctggtacgtggatctcgataccgtgttggcggtggatccat 333  Q
    ||||||||||||| ||||||||||||||||||||| |||||||||||  ||||||| | | ||||||| ||||||| |||||||    
T  1717698 gctcgaaagagct-ttatacctgctgctttgttcagggggttgctggatcgtggattttgttaccgtgctggcggtcgatccat 1717616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 334
Target Start/End: Complemental strand, 24439486 - 24439407
Alignment:
Q  255 gaaagagctattatacctgctgctttgttcag-gggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    |||||||||  ||| |||||| ||||||| || |||||||||||||||||| ||  ||||| |||||||||| ||||||||    
T  24439486 gaaagagctcctatgcctgctactttgtttagagggttgctggtacgtgga-cttcataccatgttggcggtagatccatt 24439407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 245 - 334
Target Start/End: Original strand, 10389 - 10479
Alignment:
Q  245 tgttaagctcgaaagagctattatacctgctgctttgttcagggg-ttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    ||||| |||| ||||||||  ||| |||||||||||||||||||| |||||||||||||||||| || || ||||||||||||||||||||    
T  10389 tgttatgctcaaaagagcttctatgcctgctgctttgttcagggggttgctggtacgtggatcttgaaactgtgttggcggtggatccatt 10479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 149 - 334
Target Start/End: Original strand, 3925438 - 3925624
Alignment:
Q  149 caggtctgttgagatttgcaggcctcaagtcttcaaggttacctcctctttggttctacctc-ttatccatctcagtcaatgtggctgttatcggattgt 247  Q
    ||||||||||||||| |||||| |||||||||||| ||| |||||||||  | | ||  ||  ||| |||||||||| ||| ||| |||||| ||| | |    
T  3925438 caggtctgttgagatctgcaggtctcaagtcttcagggtcacctcctctccgatactgtcttattaaccatctcagtaaatatggttgttattggactat 3925537  T
Q  248 taagctcgaaagagctatt---atacctgctgctttgttca-ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
       ||||||||||||||||   ||||||||||||||||||| |||||||||||||||||||| | | ||||||||||| ||| ||||||||    
T  3925538 ---gctcgaaagagctattattatacctgctgctttgttcagggggttgctggtacgtggat-ttgttaccgtgttggtggtcgatccatt 3925624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 252 - 334
Target Start/End: Complemental strand, 35078134 - 35078051
Alignment:
Q  252 ctcgaaagagctattatacctgctgctttgttca-ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    ||||||||||||| | | ||||||||||| |||| |||||| ||||||||||||||| || |||||||||||||| ||||||||    
T  35078134 ctcgaaagagctactgtgcctgctgctttcttcatggggtttctggtacgtggatcttgaaaccgtgttggcggtcgatccatt 35078051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 245 - 335
Target Start/End: Original strand, 5215099 - 5215190
Alignment:
Q  245 tgttaagctcgaaagagctattatacctgctgctttgttca-ggggttgctggtacgtggatctcgataccgtgttggcggtggatccattt 335  Q
    ||||| |||||||||||||| ||| | || ||||||||||| ||||||| |||||||||||||| || || |||||| |||| |||||||||    
T  5215099 tgttatgctcgaaagagctactatgcatgttgctttgttcaaggggttgttggtacgtggatcttgaaactgtgttgacggtcgatccattt 5215190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 325
Target Start/End: Original strand, 18012884 - 18012938
Alignment:
Q  272 tgctgctttgttca-ggggttgctggtacgtggatctcgataccgtgttggcggt 325  Q
    |||||||||||||| ||||||| |||||||||||||| |||||||| ||||||||    
T  18012884 tgctgctttgttcaaggggttgttggtacgtggatcttgataccgtattggcggt 18012938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 334
Target Start/End: Original strand, 4157574 - 4157663
Alignment:
Q  246 gttaagctcgaaagagctattatacctgctgctttgttcagg-ggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    |||| ||| |||||||||||| | ||| ||  |||||||||| || ||||||| ||||||||| |||||||||||| ||||  |||||||    
T  4157574 gttatgctggaaagagctattttgcctactattttgttcaggaggctgctggtgcgtggatcttgataccgtgttgacggtcaatccatt 4157663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 325
Target Start/End: Original strand, 24099591 - 24099672
Alignment:
Q  245 tgttaagctcgaaagagctattatacctgctgctttgttcaggg-gttgctggtacgtggatctcgataccgtgttggcggt 325  Q
    ||||| ||||||||||||| ||| || || ||||||| |||||| |||| |||| ||||||| | ||| |||||||||||||    
T  24099591 tgttatgctcgaaagagcttttacacttgttgctttggtcagggagttgatggttcgtggatttggattccgtgttggcggt 24099672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 239 - 307
Target Start/End: Original strand, 35193232 - 35193301
Alignment:
Q  239 tcggattgttaagctcgaaagagctattatacctgctgctttgttcagg-ggttgctggtacgtggatct 307  Q
    ||||| ||||| |||||||||||||||||| |||  || |||||||||| ||||| ||||||| ||||||    
T  35193232 tcggactgttatgctcgaaagagctattatgcctattggtttgttcaggaggttgttggtacgcggatct 35193301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 19932413 - 19932330
Alignment:
Q  251 gctcgaaagagctattatacctgctgctttgttcaggg-gttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    ||||||||||||| |||| | |||||| |||||||||| | || ||| || ||||| || |||||||||||||||| ||||||||    
T  19932413 gctcgaaagagcttttatgcttgctgcattgttcagggagctgttggcacttggatttc-ataccgtgttggcggtcgatccatt 19932330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 246 - 334
Target Start/End: Original strand, 31129 - 31218
Alignment:
Q  246 gttaagctcgaaagagctattatacctgctgctttgttcagg-ggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    |||| |||||||||||||||| | |||| || |||||||||| |||||||||||||||||||| |||||||||||| |||| ||||||||    
T  31129 gttatgctcgaaagagctattttgcctggtgttttgttcaggaggttgctggtacgtggatcttgataccgtgttgacggtcgatccatt 31218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 334
Target Start/End: Complemental strand, 43031422 - 43031359
Alignment:
Q  271 ctgctgctttgttcaggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    ||||||||||||||| ||||||||||||||||||||| | ||||||||||||||| ||||||||    
T  43031422 ctgctgctttgttcatgggttgctggtacgtggatctggttaccgtgttggcggtagatccatt 43031359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 334
Target Start/End: Complemental strand, 14635829 - 14635747
Alignment:
Q  251 gctcgaaagagctattatacctgctgctttgttcaggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    |||||||||||||  ||| ||||||||||||||||||||   ||||||||||||| | | |||||||||| |||| ||||||||    
T  14635829 gctcgaaagagctcctatgcctgctgctttgttcaggggggtctggtacgtggat-ttgttaccgtgttgacggtcgatccatt 14635747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 340
Target Start/End: Complemental strand, 8881524 - 8881428
Alignment:
Q  245 tgttaagctcgaaagagctattatacctgctgctttgttcagg-ggttgctggtacgtggatctcgataccgtgttggcggtggatccatttgctaa 340  Q
    ||||| |||||||| ||||||||| |||| || ||| || ||| |||||||||||||||||||| || ||  ||||||| || |||||||| |||||    
T  8881524 tgttatgctcgaaatagctattatgcctgttgtttttttaaggaggttgctggtacgtggatcttgaaactatgttggccgttgatccattcgctaa 8881428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 286 - 334
Target Start/End: Original strand, 23043551 - 23043599
Alignment:
Q  286 ggggttgctggtacgtggatctcgataccgtgttggcggtggatccatt 334  Q
    |||||||||||||||||||| | ||||||||||||| ||| ||||||||    
T  23043551 ggggttgctggtacgtggatattgataccgtgttggtggtcgatccatt 23043599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 251 - 298
Target Start/End: Complemental strand, 33350426 - 33350378
Alignment:
Q  251 gctcgaaagagctattatacctgctgctttgttcagg-ggttgctggta 298  Q
    ||||||||||||||||||||| ||||||||||| ||| |||||||||||    
T  33350426 gctcgaaagagctattatacccgctgctttgtttaggaggttgctggta 33350378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 305
Target Start/End: Original strand, 32365991 - 32366052
Alignment:
Q  245 tgttaagctcgaaagagctattatacctgctgctttg-ttcaggggttgctggtacgtggat 305  Q
    ||||| ||||||||||||| |||| |||||||| ||| || |||||||| ||||||||||||    
T  32365991 tgttatgctcgaaagagcttttatgcctgctgcattgtttgaggggttgttggtacgtggat 32366052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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