View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9601_high_3 (Length: 289)
Name: NF9601_high_3
Description: NF9601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9601_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 263
Target Start/End: Complemental strand, 52947955 - 52947692
Alignment:
| Q |
1 |
aacaacaacacaaaaacaagtataaaacggcatcaaacaacatataacgacatccattctactcttttacatcattacaaactaacattcaaagattttt |
100 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |
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| T |
52947955 |
aacaacaacacaaaaacaagtataaaacaacatcaaacaacatataacgacatccattctactcttttacatcattataaactagcattcaaagattttt |
52947856 |
T |
|
| Q |
101 |
tgattcaaacaacaaacaaaatataacaag--nnnnnnnnncagaggatatgnnnnnnntgttctacctcaatcgcaagccaaaaaccgcttcttctacc |
198 |
Q |
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||||||||||||||||||||| |||| ||| |||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
52947855 |
tgattcaaacaacaaacaaaagataagaagaagaaaaaaataagaggata-ggttagaatgttctacctcaatcgcaagccaaaaaccgcttcttctacc |
52947757 |
T |
|
| Q |
199 |
gtcgatcaccttcacaaaccttcgttgaccatcgattacactttgttgccgtgattcaccgtcaa |
263 |
Q |
| |
|
|||||||||||||| ||||||||| | || | |||||||||| ||||||||||||||||||||| |
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|
| T |
52947756 |
gtcgatcaccttcaaaaaccttcgctaactgttgattacacttcgttgccgtgattcaccgtcaa |
52947692 |
T |
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