View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9601_high_4 (Length: 266)
Name: NF9601_high_4
Description: NF9601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9601_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 46642251 - 46642478
Alignment:
| Q |
20 |
cacaacaaacactaacttccaatatttctccaacatacacacatttatataaattcgcattcccataacacaaaatcaaacccatccattatcagtaatg |
119 |
Q |
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| T |
46642251 |
cacaacaaacactaacttccaatatttctccaacatacacacatttatataaattcacattcccataacacaaaatcaaacccatccattatcggtaatg |
46642350 |
T |
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| Q |
120 |
gaatcctcttatagtctacaattcttaattaccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaacccaagac |
219 |
Q |
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|||||||||||||||| | || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
46642351 |
gaatcctcttatagtccaaaactcttaatttccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaatccaagac |
46642450 |
T |
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| Q |
220 |
tcaccaaagcctacatagcactccaagc |
247 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
46642451 |
tcaccaaagcctacatagcactccaagc |
46642478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 20 - 247
Target Start/End: Original strand, 46639956 - 46640186
Alignment:
| Q |
20 |
cacaacaaacactaacttccaatatttctccaacatacacacat---ttatataaattcgcattcccataacacaaaatcaaacccatccattatcagta |
116 |
Q |
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||||||||||| ||||||||| |||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46639956 |
cacaacaaacagaaacttccaaaatttctccaacatacacacaccccttatataaattcacattcccataacacaaaatcaaacccatccattatcagta |
46640055 |
T |
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| Q |
117 |
atggaatcctcttatagtctacaattcttaattaccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaacccaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46640056 |
atggaatcctcttatagtctacaattcttaattaccttcattgtcattctcatatccatcaacccctcatcacaccaatctctaccaccactaaacccaa |
46640155 |
T |
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| Q |
217 |
gactcaccaaagcctacatagcactccaagc |
247 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
46640156 |
gactcaccaaagcctacatagcactccaagc |
46640186 |
T |
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