View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9601_low_11 (Length: 243)
Name: NF9601_low_11
Description: NF9601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9601_low_11 |
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| [»] scaffold0504 (1 HSPs) |
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Alignment Details
Target: scaffold0504 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 15 - 172
Target Start/End: Complemental strand, 8197 - 8041
Alignment:
| Q |
15 |
catacaacatcatagttagttaaacatcaaaagacaattcaaaatgcaagggaatcattcatccatgaaagaaccatcaataccctcaaaaaatggatca |
114 |
Q |
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| T |
8197 |
catacaatatcatagttagttaaacagcaaaagacaatttaaagtgcaagggaatcattcatccatgaaagaaccatcaataccctcaaaaaatggatca |
8098 |
T |
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| Q |
115 |
ctgaagagcttcacttcctctgctcttcatcatcaaagattgaagagttcatatttca |
172 |
Q |
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| T |
8097 |
ctgaagagcttcacttcctctgctcttcatcatcaaag-ttgaagagttcagatttca |
8041 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 12026321 - 12026421
Alignment:
| Q |
16 |
atacaacatcatagttagttaaacatcaaaagacaattcaaaatgcaagggaatcattcatccatgaaagaaccatcaataccctcaaaaaatggatcac |
115 |
Q |
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| T |
12026321 |
atacaacatcatagttagttaaacatgaaaagacaatttaaagtgcaagggaatcattcattcatgaaagaaccatcaataccctcaaaaaatggatcac |
12026420 |
T |
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| Q |
116 |
t |
116 |
Q |
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| T |
12026421 |
t |
12026421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 12026421 - 12026496
Alignment:
| Q |
168 |
tttcaggaaaagcaaaaccggaacgctttgcagtttccaacagagtaagtttcttcttaatagctttcaatacttc |
243 |
Q |
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| T |
12026421 |
tttcaggaaaagcaaaaccggaacgctttgcagtttccaacagagtaagtttcttcttaagagctttcaatacttc |
12026496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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