View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9601_low_12 (Length: 241)
Name: NF9601_low_12
Description: NF9601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9601_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 37475213 - 37475432
Alignment:
| Q |
1 |
aatattttactcatggtggtgtgtgtatgaaaaacaattggtgcaaataataatactcgggctttaaagcccacgggttgttaattgcctggaacttgga |
100 |
Q |
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| T |
37475213 |
aatattttactcatggtggtgtgtgtatgaaaaacaattggtgcaaataataatactcgggctttaaagcccacgggttgttaattgcctggaacttgga |
37475312 |
T |
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| Q |
101 |
tgggttagttcctttacggcgtcgtcggtgaatccgtgtttgagcggtcaacggtcaatttcgaaagttcgccgagaaagcaaggttgttgttcaacatt |
200 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37475313 |
tgggttagttcctttacgg---cgtcggtgaatccgtgtttgagcggtcaacggtcaatttcgaaagttcgccgagaaagcaaggttgttgttcaacatt |
37475409 |
T |
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| Q |
201 |
attaacattcttccttctcttgg |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
37475410 |
attaacattcttccttctcttgg |
37475432 |
T |
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