View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9601_low_14 (Length: 234)
Name: NF9601_low_14
Description: NF9601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9601_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 220
Target Start/End: Complemental strand, 6490359 - 6490156
Alignment:
| Q |
17 |
caagaacaactccaccaggaccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattgg |
116 |
Q |
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| T |
6490359 |
caagaacaactccaccaggaccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattgg |
6490260 |
T |
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| Q |
117 |
tgaagcatatcccaaatcagcagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccattttctcagcagcc |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6490259 |
tgaagcatatcccaaatcagcagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccattttctcagcagcc |
6490160 |
T |
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| Q |
217 |
tttg |
220 |
Q |
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|||| |
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| T |
6490159 |
tttg |
6490156 |
T |
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Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 6348351 - 6348534
Alignment:
| Q |
37 |
ccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattggtgaagcatatcccaaatcag |
136 |
Q |
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| T |
6348351 |
ccattagcaaacttctcaagcaaataagatgaacaatcattgaagcaattatgtgtatctttaatagtatcatgaattggtgacttagacccaaaagatt |
6348450 |
T |
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| Q |
137 |
cagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccattttctcagcagcctttg |
220 |
Q |
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| T |
6348451 |
cagccaatgtactttctgttgacatataagcacctctaaccaatttaaatcccataggaattccaattttttcagcagcttttg |
6348534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 6326115 - 6326298
Alignment:
| Q |
37 |
ccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattggtgaagcatatcccaaatcag |
136 |
Q |
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|||||||||| ||||||||||| ||| ||||||||||||||| || ||||||||||| | |||||| | |||||||||||| | | || ||| |
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| T |
6326115 |
ccattagcaaacttctcaagcaaataagatgaacaatcattgaagcaattatgtgtatcttcaatagtatcatgaattggtgacttagacccaaaagatt |
6326214 |
T |
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| Q |
137 |
cagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccattttctcagcagcctttg |
220 |
Q |
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| T |
6326215 |
cagccaatgtactttctgtggacatataagcacctctaaccaatttaaatcccataggaattccaatttcttcagcagcttttg |
6326298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 37 - 220
Target Start/End: Original strand, 6333071 - 6333254
Alignment:
| Q |
37 |
ccattagcaatcttctcaagcatgtaatctgaacaatcattgaaacacttatgtgtatccttaatagtgttatgaattggtgaagcatatcccaaatcag |
136 |
Q |
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|||||||||| ||||||||||| ||| ||||||||||||||| || ||||||||||| | |||||| | |||||||||||| | | || ||| |
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| T |
6333071 |
ccattagcaaacttctcaagcaaataagatgaacaatcattgaagcaattatgtgtatcttcaatagtatcatgaattggtgacttagacccaaaagatt |
6333170 |
T |
|
| Q |
137 |
cagccaattttctttcactagacatataagcacctctaaccaacttaaatcccattggtatccccattttctcagcagcctttg |
220 |
Q |
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|||||||| | ||||| | ||||||||||||||||||||||| ||||||||||| || || || |||| |||||||| |||| |
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| T |
6333171 |
cagccaatgtactttctgtggacatataagcacctctaaccaatttaaatcccataggaattccaatttcttcagcagcttttg |
6333254 |
T |
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