View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9601_low_15 (Length: 233)
Name: NF9601_low_15
Description: NF9601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9601_low_15 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 34860937 - 34860731
Alignment:
| Q |
9 |
aagcaaaggaaagaagtaggaatttgttatcttcaccttgacttggatctttagtagttttgaagttgatatacgacatatgaacctatatattagcata |
108 |
Q |
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| T |
34860937 |
aagcataggaaagaagtaggaattcgttatcttcaccttgacttggatctttagtagttttgaagttgatatacgacatatgaacctatatattagctta |
34860838 |
T |
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| Q |
109 |
tgaaaattgttgctcacttgtttgactaaaaaattctaataattttgtttttattttgatatatgatttggatctttagttatgttgaagttcatatatg |
208 |
Q |
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| T |
34860837 |
tgaaaattgttgctcacttgtttgactaaaaaattctaataattttgtttttattttgatatatgatttggatctttagttatgttgaagttcatatatg |
34860738 |
T |
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| Q |
209 |
acatgtg |
215 |
Q |
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||||||| |
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| T |
34860737 |
acatgtg |
34860731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 51 - 158
Target Start/End: Complemental strand, 34860770 - 34860663
Alignment:
| Q |
51 |
ttggatctttagtagttttgaagttgatatacgacatatgaacctatatattagcatatgaaaattgttgctcacttgtttgactaaaaaattctaataa |
150 |
Q |
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||||||||||||| | |||||||| ||||| ||||| ||||| ||||| ||||| ||| ||||||||| ||||||||||||| |||||| ||||| |
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| T |
34860770 |
ttggatctttagttatgttgaagttcatatatgacatgtgaacttatattttagcttattcaaattgttgtgcacttgtttgactcaaaaatgataatat |
34860671 |
T |
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| Q |
151 |
ttttgttt |
158 |
Q |
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| T |
34860670 |
ttttgttt |
34860663 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Complemental strand, 19745778 - 19745739
Alignment:
| Q |
170 |
tatgatttggatctttagttatgttgaagttcatatatga |
209 |
Q |
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| T |
19745778 |
tatgatttggatatttagttatgttgaagtttatatatga |
19745739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 170 - 209
Target Start/End: Original strand, 24023073 - 24023112
Alignment:
| Q |
170 |
tatgatttggatctttagttatgttgaagttcatatatga |
209 |
Q |
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| T |
24023073 |
tatgacttggatctttatttatgttgaagttcatatatga |
24023112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 83 - 131
Target Start/End: Original strand, 36341389 - 36341437
Alignment:
| Q |
83 |
gacatatgaacctatatattagcatatgaaaattgttgctcacttgttt |
131 |
Q |
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||||||||||| ||| ||||||| |||| ||||||||| |||||||||| |
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| T |
36341389 |
gacatatgaacttatgtattagcttatgtaaattgttgttcacttgttt |
36341437 |
T |
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