View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9601_low_16 (Length: 209)
Name: NF9601_low_16
Description: NF9601
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9601_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 51547458 - 51547278
Alignment:
| Q |
18 |
gcttgaaatttcaacattttcctcatatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcattaatg |
117 |
Q |
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| T |
51547458 |
gcttgaaatttcaacattttcctcatatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcattaatg |
51547359 |
T |
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| Q |
118 |
gtgctaaagtttcccgttccatctgcagccacaacaatcacattgtcggtgctttgcaagaacctgcggcgatctctgctt |
198 |
Q |
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| T |
51547358 |
gtgctaaagtttcccgttccatctgcagccacaacaatcacattgtcggtgctttgcaagaacctgcggtgatctttgctt |
51547278 |
T |
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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 25 - 145
Target Start/End: Complemental strand, 19475343 - 19475223
Alignment:
| Q |
25 |
atttcaacattttcctcatatatcccttcttttacatagattattatcctagcatagctgttatttggagcaaattcaatggcttcattaatggtgctaa |
124 |
Q |
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|||||||||||||| ||||| ||||||||| ||||| || | ||||||| | | || |||||||||||||| | || || |||||||| ||||||| |
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| T |
19475343 |
atttcaacattttcatcataatacccttctttaacataaataactatcctaaccaaactattatttggagcaaagtttatagcatcattaatagtgctaa |
19475244 |
T |
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| Q |
125 |
agtttcccgttccatctgcag |
145 |
Q |
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| T |
19475243 |
agtttccacttccatctgcag |
19475223 |
T |
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