View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9602_high_1 (Length: 565)
Name: NF9602_high_1
Description: NF9602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9602_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 87 - 550
Target Start/End: Complemental strand, 4266870 - 4266407
Alignment:
| Q |
87 |
gaacaaaggagtggttcatgcatctataaatactcaagacgctcaagcaagttttagatagacgtgagtaagaggttttatagaatgaaatgtctacctt |
186 |
Q |
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| T |
4266870 |
gaacaaaggagtggttcatgcatctataaatactcaagacgctcaagcaagttttagatagacgtgagtaagaggttttatagaatgaaatatctacctt |
4266771 |
T |
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| Q |
187 |
tttcatggtacaaaggttcttttatagcaagagtttctagggaaatggatgaaaaatccattgaggtccttgagggatttgcgttgtgaccgattgatca |
286 |
Q |
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| T |
4266770 |
tttcatggtacaaaggttcttttagagcaagagtttctagggaaatggatgaaaaatccattgaggtccttgagggatttgcgttgtgaccgattgatca |
4266671 |
T |
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| Q |
287 |
ccctttattttcattacatagtgattattaaggagtaatgcatgggttgggagactcaactatttgagttaagggttaagaagtttgaggttcatggtta |
386 |
Q |
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| T |
4266670 |
ccctttattttcattacatagtgattgttaaggagtaatgcatgggttgggagactcaactatttgagttaagggttaagaagtttgaggttcatggtta |
4266571 |
T |
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| Q |
387 |
agttatgacaaaaactaacatattatcgtttattattaaaaagaaagaaagagcaatgcatgtttgtgcttgcggtgtagagcgtacattgcttgcacct |
486 |
Q |
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| T |
4266570 |
agttatgacaaaaactaacatattatcgtttattattaaaaagaaagaaagagcaatgcatgtttgtgcctgcggtgtagagcgtacattgcttgcacct |
4266471 |
T |
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| Q |
487 |
tcatattagtccaatctaccaataattttacatgagtataatctattacctataatgatgagag |
550 |
Q |
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| T |
4266470 |
tcatattagtccaatctaccaataatcttacatgagtataatctattacctataatgatgagag |
4266407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 13 - 107
Target Start/End: Complemental strand, 4267081 - 4266988
Alignment:
| Q |
13 |
tttggtgtttaatttgtcccttattgttgataaacttcataatgtggtttttactttggtgagtacgaatgggagaacaaaggagtggttcatgc |
107 |
Q |
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| T |
4267081 |
tttggtgtttaatttgtcccttattgttgataaacttcataatgtggtttttactttggtgagtac-tatgggagaacaaaggagtggttcatgc |
4266988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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