View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9602_low_11 (Length: 224)
Name: NF9602_low_11
Description: NF9602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9602_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 3249059 - 3249255
Alignment:
| Q |
18 |
gcaatttctctgtgtcatgtagttcattcaagcttccaagtcgtaaatggaaatcaggggagttggttatgttgtgtagttcagtagcagcctgttcaga |
117 |
Q |
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| T |
3249059 |
gcaatttctctgtgtcatgtagttcattcaagcttccaagtcgtaaatggaaatcaggggagttggttatgttgtgtagttcagtagcagcctgttcaga |
3249158 |
T |
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| Q |
118 |
atgtgtatttttagtattggttgtttcaaggtcgaaaatcttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcagtgcccttt |
214 |
Q |
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| T |
3249159 |
atgtgtatttttagtattggttgtttcaaggtcgaaaatcttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcagtgcccttt |
3249255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 27 - 206
Target Start/End: Complemental strand, 36905562 - 36905383
Alignment:
| Q |
27 |
ctgtgtcatgtagttcattcaagcttccaagtcgtaaatggaaatcaggggagttggttatgttgtgtagttcagtagcagcctgttcagaatgtgtatt |
126 |
Q |
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| T |
36905562 |
ctgtgttatgtaggtcattcaagcttccaagacgtaaatgagaatcagaggaattggttatgttgtgtagttcagtagcagcctgtttagattgtgcatt |
36905463 |
T |
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| Q |
127 |
tttagtattggttgtttcaaggtcgaaaatcttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcag |
206 |
Q |
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| T |
36905462 |
ttcagtattggtggtttcaaggtcgaaaatcttaacaggggagttcacaaactcagcaatatctttatgcatcaaatcag |
36905383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 29 - 206
Target Start/End: Original strand, 28102443 - 28102620
Alignment:
| Q |
29 |
gtgtcatgtagttcattcaagcttccaagtcgtaaatggaaatcaggggagttggttatgttgtgtagttcagtagcagcctgttcagaatgtgtatttt |
128 |
Q |
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| T |
28102443 |
gtgtcatgtaggtcattcaagcttccaagtcgtaaatgagaatcaggggagttggttatgttgtgtagttcagtagcagcctgttcagattgtgtatttt |
28102542 |
T |
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| Q |
129 |
tagtattggttgtttcaaggtcgaaaatcttaacaggggagttcacaggctcagcagtttctttatgcatcaaatcag |
206 |
Q |
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| T |
28102543 |
cattattggtggtttcaaggtcgaaaatcttaacaggggagttcacatgctcatcagtttctttatgcatcaaatcag |
28102620 |
T |
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