View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9602_low_6 (Length: 278)
Name: NF9602_low_6
Description: NF9602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9602_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 19 - 260
Target Start/End: Original strand, 35529458 - 35529699
Alignment:
| Q |
19 |
cacagaagcacaatcagaaaagatgagagtcattaaaaaaggtaaagcaaaaccgatctttaaccgaagctacctttccgtgagaatagtaagcaacttt |
118 |
Q |
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|||| ||||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35529458 |
cacaaaagcacaatcagaaaagattaaagtcattaaaaaaggtaaagcaaaacccatctttaaccgaagctacctttccgtgagaatagtaagcaacttc |
35529557 |
T |
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| Q |
119 |
agctccatctagtaacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35529558 |
agctccatctagtaacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctga |
35529657 |
T |
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| Q |
219 |
taacactagaacaccgtgtgttaatgcatataatatacatct |
260 |
Q |
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| T |
35529658 |
taacactagaacaccgtgtgttaatgcatataatatacatct |
35529699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 35536930 - 35537165
Alignment:
| Q |
19 |
cacagaagcacaatcagaaaagatgagagtcattaaaaaaggtaaagcaaaaccgatctttaaccgaagctacctttccgtgagaatagtaagcaacttt |
118 |
Q |
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|||| ||||||||||||||||||||| || | |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
35536930 |
cacaaaagcacaatcagaaaagatgaaagccgttaaaaaaggtaaagcaaaacc-atctttaaccgaagctacctttccgtgagaatagtaagaaacttc |
35537028 |
T |
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| Q |
119 |
agctccatctagtaacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctga |
218 |
Q |
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|||||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||| |||| ||||| |
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| T |
35537029 |
agctccatctggtaacacgtcttcttcaaataccaacttatgcaaccgtacatccctatcaaaataggatcaagaatcagagcaaaattaaaatccctga |
35537128 |
T |
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| Q |
219 |
taacactagaacaccgtgtgttaatgcatataatata |
255 |
Q |
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| T |
35537129 |
tgaaactagaacgccgtgtgttaatgcatataatata |
35537165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 19 - 255
Target Start/End: Original strand, 35577195 - 35577434
Alignment:
| Q |
19 |
cacagaagcacaatcagaaaagatgagagtcattaaaaaaggtaaagcaaaaccgatctttaaccgaagctacctttccgtgagaatagtaagcaacttt |
118 |
Q |
| |
|
|||| ||||||||||||||||||||| |||||| ||| |||||||| | |||| |||||||||| ||||||||||||| ||||||||||||||||||| |
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| T |
35577195 |
cacaaaagcacaatcagaaaagatgaaagtcataaaacaaggtaaaactgaacccatctttaaccaaagctacctttccatgagaatagtaagcaacttc |
35577294 |
T |
|
| Q |
119 |
agctccatctagtaacaagtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggatcaagaaaaagagaaaaatttaaattcctga |
218 |
Q |
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|| ||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| |
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| T |
35577295 |
agttccatcttctaacacgtcttcttcaaataccaacttatgcaaccgtagatccctatcaaaataggttcaagaaaaagagcaaaatttaaattcctgg |
35577394 |
T |
|
| Q |
219 |
taacactagaacaccgtg---tgttaatgcatataatata |
255 |
Q |
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| | |||||||| | ||| ||||||||||||||||||| |
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| T |
35577395 |
tgaaactagaacgctgtgtgttgttaatgcatataatata |
35577434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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