View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9602_low_8 (Length: 255)

Name: NF9602_low_8
Description: NF9602
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9602_low_8
NF9602_low_8
[»] chr8 (10 HSPs)
chr8 (1-255)||(33005158-33005412)
chr8 (1-255)||(3777913-3778176)
chr8 (3-125)||(3700915-3701037)
chr8 (3-117)||(3707682-3707796)
chr8 (3-117)||(3770399-3770513)
chr8 (3-115)||(3719191-3719303)
chr8 (153-235)||(3701080-3701162)
chr8 (153-255)||(3770246-3770348)
chr8 (162-255)||(3707856-3707949)
chr8 (153-235)||(3719356-3719438)


Alignment Details
Target: chr8 (Bit Score: 251; Significance: 1e-139; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 33005412 - 33005158
Alignment:
Q  1 ctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctgagtggtcaaaaattcttgtg 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  33005412 ctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagatcaatgaactagctttagggttagagctgagtggtcaaaaattcttgtg 33005313  T
Q  101 ggttttgagagaacctaataattctgaaattctaggtgaccatagtgctaaaaatgaccctttaaaatacttaccaagtgggttcttagggagaaccaaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33005312 ggttttgagagaacctaataattctgaaattctaggtgaccatagtgctaaaaatgaccctttaaaatacttaccaagtgggttcttagggagaaccaaa 33005213  T
Q  201 gaacaaggattagtagtttctttttgggcaccacagactcaaatcctaagccaca 255  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33005212 gaacaaggattagtagtttctttttgggcaccacagactcaaatcctaagccaca 33005158  T

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Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 3778176 - 3777913
Alignment:
Q  1 ctgttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctgagtggtcaaaaattcttgtg 100  Q
    ||||||||||||| ||||||||||||  | | | |||||||||| ||||||| ||||||||||| |||||||||||| |||||||||| |||||||||||    
T  3778176 ctgttttgtatgtctcctttggaagtgcatgcactttatctcaacagcagatcaatgaactagcattagggttagaggtgagtggtcagaaattcttgtg 3778077  T
Q  101 ggttttgagagaacctaataattctgaaattctaggtgaccatagtgctaaaaat---------gaccctttaaaatacttaccaagtgggttcttaggg 191  Q
    ||||||||||||||||| |||||||   | | ||||  ||||||||||||  |||         ||||| ||||| |  ||||||   |||||||||| |    
T  3778076 ggttttgagagaacctagtaattctattaatgtaggaaaccatagtgctaccaatgatcatgacgacccattaaagtttttaccacaagggttcttagag 3777977  T
Q  192 agaaccaaagaacaaggattagtagtttctttttgggcaccacagactcaaatcctaagccaca 255  Q
    ||||||||||||||||| ||||| ||| |||||||||| || ||||||||||||||||||||||    
T  3777976 agaaccaaagaacaagggttagttgttcctttttgggccccgcagactcaaatcctaagccaca 3777913  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 3 - 125
Target Start/End: Original strand, 3700915 - 3701037
Alignment:
Q  3 gttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctgagtggtcaaaaattcttgtggg 102  Q
    ||||||||||| | |||||||||| |||||| |||||||||| | || || |||||||||||||| ||||| ||| |||||  ||| |||||||||||||    
T  3700915 gttttgtatgtctgctttggaagtggaggaactttatctcaacaacaaatcaatgaactagctttggggttggagttgagtaatcagaaattcttgtggg 3701014  T
Q  103 ttttgagagaacctaataattct 125  Q
    ||||||||||||||| |||||||    
T  3701015 ttttgagagaacctagtaattct 3701037  T

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Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 3 - 117
Target Start/End: Original strand, 3707682 - 3707796
Alignment:
Q  3 gttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctgagtggtcaaaaattcttgtggg 102  Q
    ||||||||||||| |||||||||| |||||| |||||||||| | || |  |||||||||||||| ||| | ||  |||||||||| |||||||||||||    
T  3707682 gttttgtatgtgtgctttggaagtggaggaactttatctcaacaacaaaccaatgaactagctttggggctggaattgagtggtcagaaattcttgtggg 3707781  T
Q  103 ttttgagagaaccta 117  Q
    |||||||||||||||    
T  3707782 ttttgagagaaccta 3707796  T

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Target: chr8; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 3 - 117
Target Start/End: Complemental strand, 3770513 - 3770399
Alignment:
Q  3 gttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctgagtggtcaaaaattcttgtggg 102  Q
    ||||||||||| | |||||||||| |||||| ||| |||||| | || |  |||||||||||||| ||| | ||| |||||||||| |||||||||||||    
T  3770513 gttttgtatgtctgctttggaagtggaggaactttttctcaacaacaaaccaatgaactagctttggggctggagttgagtggtcagaaattcttgtggg 3770414  T
Q  103 ttttgagagaaccta 117  Q
    |||||||||||||||    
T  3770413 ttttgagagaaccta 3770399  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 3 - 115
Target Start/End: Original strand, 3719191 - 3719303
Alignment:
Q  3 gttttgtatgtgtcctttggaagtagaggaagtttatctcaagagcagattaatgaactagctttagggttagagctgagtggtcaaaaattcttgtggg 102  Q
    ||||||||||| | |||||||||| |||||| |||||||||| | ||||| |||||| ||||||| | ||| ||| |||||  ||| ||||| |||||||    
T  3719191 gttttgtatgtctgctttggaagtggaggaactttatctcaacaacagatcaatgaattagctttggcgttggagttgagtaatcagaaatttttgtggg 3719290  T
Q  103 ttttgagagaacc 115  Q
    |||||||||||||    
T  3719291 ttttgagagaacc 3719303  T

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Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 3701080 - 3701162
Alignment:
Q  153 aatgaccctttaaaatacttaccaagtgggttcttagggagaaccaaagaacaaggattagtagtttctttttgggcaccaca 235  Q
    |||||||  ||||| |||||||||  ||||||||||| |||||||||||||||||| ||||| ||| || |||||||||||||    
T  3701080 aatgacctattaaagtacttaccacatgggttcttagagagaaccaaagaacaagggttagttgttcctctttgggcaccaca 3701162  T

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Target: chr8; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 153 - 255
Target Start/End: Complemental strand, 3770348 - 3770246
Alignment:
Q  153 aatgaccctttaaaatacttaccaagtgggttcttagggagaaccaaagaacaaggattagtagtttctttttgggcaccacagactcaaatcctaagcc 252  Q
    |||||||  ||||| |||||||||  |||||||||||  ||||||||||||||||| ||||| ||| || ||||||||||||| ||  |||||||||| |    
T  3770348 aatgacctattaaagtacttaccacatgggttcttagaaagaaccaaagaacaagggttagttgttcctctttgggcaccacaaaccaaaatcctaagtc 3770249  T
Q  253 aca 255  Q
    |||    
T  3770248 aca 3770246  T

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Target: chr8; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 162 - 255
Target Start/End: Original strand, 3707856 - 3707949
Alignment:
Q  162 ttaaaatacttaccaagtgggttcttagggagaaccaaagaacaaggattagtagtttctttttgggcaccacagactcaaatcctaagccaca 255  Q
    ||||| |||||||||  |||||||||||  ||||||||||||||||| ||||| ||| || ||||||||||||| ||  |||||||||| ||||    
T  3707856 ttaaagtacttaccacatgggttcttagatagaaccaaagaacaagggttagttgttcctctttgggcaccacaaaccaaaatcctaagtcaca 3707949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 235
Target Start/End: Original strand, 3719356 - 3719438
Alignment:
Q  153 aatgaccctttaaaatacttaccaagtgggttcttagggagaaccaaagaacaaggattagtagtttctttttgggcaccaca 235  Q
    |||||||  ||||| | |||||||  ||||||||||| ||||||||||||||||||  |||| ||| |  |||||||||||||    
T  3719356 aatgacctattaaagttcttaccacatgggttcttagagagaaccaaagaacaagggctagttgttccactttgggcaccaca 3719438  T

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