View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9603_high_1 (Length: 319)

Name: NF9603_high_1
Description: NF9603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9603_high_1
NF9603_high_1
[»] chr6 (9 HSPs)
chr6 (19-305)||(29485167-29485453)
chr6 (19-305)||(14738780-14739079)
chr6 (19-305)||(33332284-33332583)
chr6 (19-302)||(24432529-24432825)
chr6 (82-259)||(24077556-24077733)
chr6 (122-300)||(17693490-17693668)
chr6 (131-300)||(13880116-13880285)
chr6 (122-234)||(25943037-25943149)
chr6 (134-234)||(22349672-22349772)
[»] chr7 (14 HSPs)
chr7 (19-305)||(21987500-21987799)
chr7 (19-305)||(18412238-18412537)
chr7 (19-305)||(49090268-49090568)
chr7 (19-305)||(21644617-21644916)
chr7 (19-305)||(9186353-9186652)
chr7 (19-305)||(16883507-16883806)
chr7 (19-305)||(24262531-24262830)
chr7 (26-305)||(5818400-5818692)
chr7 (19-79)||(12405156-12405216)
chr7 (122-300)||(7071419-7071597)
chr7 (122-231)||(44013234-44013343)
chr7 (128-300)||(3323422-3323594)
chr7 (131-300)||(25406791-25406960)
chr7 (131-234)||(25352729-25352832)
[»] chr8 (12 HSPs)
chr8 (19-305)||(18866878-18867177)
chr8 (19-305)||(18856483-18856782)
chr8 (19-305)||(35743969-35744269)
chr8 (19-305)||(10685472-10685771)
chr8 (19-305)||(26299930-26300229)
chr8 (19-77)||(23800726-23800784)
chr8 (83-231)||(15945992-15946140)
chr8 (122-300)||(28892132-28892310)
chr8 (122-234)||(21038798-21038910)
chr8 (122-234)||(33034009-33034121)
chr8 (131-234)||(16755961-16756064)
chr8 (131-224)||(28329285-28329378)
[»] chr4 (6 HSPs)
chr4 (19-305)||(9225612-9225911)
chr4 (19-305)||(16625201-16625500)
chr4 (80-305)||(5146486-5146709)
chr4 (122-300)||(15313686-15313864)
chr4 (122-231)||(4559573-4559682)
chr4 (19-54)||(5146745-5146780)
[»] scaffold0197 (1 HSPs)
scaffold0197 (19-305)||(15517-15816)
[»] chr3 (18 HSPs)
chr3 (19-305)||(16262942-16263241)
chr3 (19-305)||(3324744-3325043)
chr3 (19-305)||(2673428-2673727)
chr3 (19-305)||(28490381-28490680)
chr3 (19-305)||(32478920-32479219)
chr3 (19-305)||(8515674-8515973)
chr3 (96-305)||(1309451-1309660)
chr3 (19-305)||(9603055-9603354)
chr3 (122-300)||(10898373-10898551)
chr3 (122-300)||(22624614-22624792)
chr3 (122-300)||(29912590-29912768)
chr3 (122-300)||(54189876-54190054)
chr3 (131-300)||(10097441-10097610)
chr3 (131-300)||(10204326-10204495)
chr3 (134-300)||(10611412-10611578)
chr3 (131-234)||(6304688-6304791)
chr3 (131-300)||(16458842-16459011)
chr3 (122-231)||(47881592-47881701)
[»] chr5 (12 HSPs)
chr5 (19-305)||(27448402-27448701)
chr5 (19-305)||(43595701-43596000)
chr5 (19-305)||(43628495-43628794)
chr5 (21-305)||(24556794-24557091)
chr5 (21-305)||(24597826-24598123)
chr5 (80-305)||(28836872-28837097)
chr5 (19-305)||(37557832-37558131)
chr5 (19-305)||(31398200-31398499)
chr5 (19-252)||(33789948-33790194)
chr5 (120-231)||(10628725-10628836)
chr5 (122-234)||(25446855-25446967)
chr5 (122-231)||(31781163-31781272)
[»] chr2 (9 HSPs)
chr2 (19-305)||(19347858-19348157)
chr2 (191-305)||(25394466-25394580)
chr2 (80-234)||(20053461-20053615)
chr2 (131-234)||(39683625-39683728)
chr2 (131-300)||(2737582-2737751)
chr2 (19-79)||(10446633-10446693)
chr2 (143-300)||(17933510-17933667)
chr2 (131-234)||(22715934-22716037)
chr2 (19-62)||(25402486-25402529)
[»] scaffold0006 (2 HSPs)
scaffold0006 (19-305)||(1088-1386)
scaffold0006 (170-305)||(9244-9378)
[»] chr1 (8 HSPs)
chr1 (19-303)||(41396821-41397118)
chr1 (19-305)||(47100026-47100325)
chr1 (83-305)||(9025083-9025305)
chr1 (122-234)||(2399925-2400037)
chr1 (19-79)||(19360046-19360106)
chr1 (122-234)||(9523096-9523208)
chr1 (21-75)||(9025008-9025063)
chr1 (19-51)||(17346721-17346753)
[»] scaffold0078 (1 HSPs)
scaffold0078 (19-305)||(35590-35889)
[»] scaffold0842 (1 HSPs)
scaffold0842 (19-79)||(4402-4462)
[»] scaffold0256 (1 HSPs)
scaffold0256 (122-234)||(17693-17805)
[»] scaffold0028 (1 HSPs)
scaffold0028 (19-79)||(150163-150223)
[»] scaffold0023 (1 HSPs)
scaffold0023 (131-234)||(49907-50010)
[»] scaffold0188 (1 HSPs)
scaffold0188 (19-62)||(19147-19190)


Alignment Details
Target: chr6 (Bit Score: 251; Significance: 1e-139; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 29485453 - 29485167
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggaggggaaataataaagcatgcaaagtccaaggcatgggcaac 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  29485453 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggaggggaaataataaagcgtgcaaagtccaaggcatgggcaac 29485354  T
Q  119 gttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgata 218  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||    
T  29485353 attcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccctaagcatgtttaata 29485254  T
Q  219 gtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    |||||||||||||||| | |||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  29485253 gtctaggttattgcactagaattgagcatgaggtttgtaaaatttcgcagggtgcattgattacggttaaagggtctaaaatgaatg 29485167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 14738780 - 14739079
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  14738780 gctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 14738879  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  14738880 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttcccta 14738979  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  14738980 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatg 14739079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 33332284 - 33332583
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagggg-------------aaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |             |||||| ||||| |||||||||||    
T  33332284 gctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcagaaataacaaagcttgcaaagtcca 33332383  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  33332384 aggcacgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccata 33332483  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  33332484 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatg 33332583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 19 - 302
Target Start/End: Original strand, 24432529 - 24432825
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    ||||||||||| | |||| ||| ||||||||||||| |||||||| |||||||||| ||||             |||||||| ||||| |||| ||||||    
T  24432529 gctcttatcacgtatgtcatagaaaggaatattttgagactttggctctaaaagaatgaggagttgttcgactcggaaataacaaagcgtgcacagtcca 24432628  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  24432629 aggcgtgggcaccgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccata 24432728  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatga 302  Q
    ||||| |||||||||||||||||||| || | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24432729 agcatatttgatagtctaggttattgtactagaattgagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatga 24432825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 82 - 259
Target Start/End: Complemental strand, 24077733 - 24077556
Alignment:
Q  82 aaataataaagcatgcaaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaa 181  Q
    |||||| || || |||||||||||| |||||   | ||||||| |||| |||||||||  || ||||||| || ||||||||||||| |  ||||  |||    
T  24077733 aaataacaaggcttgcaaagtccaacgcatgtctaccgttcgtttaaatatgtttgatatccatgaattcattctaagggatgtgagataggttcttgaa 24077634  T
Q  182 cttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaa 259  Q
    | |||||||| |||||||||  |||||||||||||||||||||||||||| || |  ||| |||||| ||||||||||    
T  24077633 cataagcgaactttaatttccataagcatgtttgatagtctaggttattgtactaggattgagcatgaggtttgtaaa 24077556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 300
Target Start/End: Complemental strand, 17693668 - 17693490
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || ||||||||||  ||||| |||||||| | ||||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| |||    
T  17693668 cgtctcaaaatgtttgatgatcgtgatttccttttgaaggatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtc 17693569  T
Q  222 taggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| |||||||| | |||| | | ||| ||    | |||||| |||||||||||| |||  | |||||||||||||||    
T  17693568 taggctattgcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatagctaaagggtctaaaat 17693490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 300
Target Start/End: Original strand, 13880116 - 13880285
Alignment:
Q  131 atgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttatt 230  Q
    ||||||||||  ||||| |||||||| | | ||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| ||||||| ||||    
T  13880116 atgtttgatgatcgtgatttccttttgaagaatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtctaggctatt 13880215  T
Q  231 gcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| | |||| | | ||| ||    | |||||| |||||||||||| ||| || |||||||||||||||    
T  13880216 gcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatggctaaagggtctaaaat 13880285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 25943037 - 25943149
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || ||||||||||  ||||| |||||||| | ||||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| |||    
T  25943037 cgtctcaaaatgtttgatgatcgtgatttccttttgaaggatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtc 25943136  T
Q  222 taggttattgcac 234  Q
    |||| ||||||||    
T  25943137 taggctattgcac 25943149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 234
Target Start/End: Complemental strand, 22349772 - 22349672
Alignment:
Q  134 tttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttattgca 233  Q
    ||||||| |||||| |||||||| | ||||||||||| | |||| ||||||| |  ||||||||| ||  |||||||||||||| ||||||| |||||||    
T  22349772 tttgatgaccgtgatttccttttgaaggatgtgaggtatattcctgaacttaggttaaatttaatatctataagcatgtttgatggtctaggctattgca 22349673  T
Q  234 c 234  Q
    |    
T  22349672 c 22349672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 21987799 - 21987500
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||             |||||||| ||||| |||||||||||    
T  21987799 gctcttatcacatgtgtcctaggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaagcgtgcaaagtcca 21987700  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||    
T  21987699 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaaacgaaatttaatttcccta 21987600  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    || |||||||||||||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  21987599 agaatgtttgatagtctaggttattgcactagaattgagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaaggatctaaaatgaatg 21987500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 18412537 - 18412238
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| ||||||||||||| |||||||  |||||||||||||||             |||||||| ||||| |||||||||||    
T  18412537 gctcttatcacatgtgtcctagaaaggaatattttgagactttgactctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 18412438  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  18412437 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcccta 18412338  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    |||||||||||| |||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  18412337 agcatgtttgatggtctaggttattgcactagaattgagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaggggtctaaaatgaatg 18412238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 49090568 - 49090268
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaa-gcatgcaaagtcc 104  Q
    ||||| |||||||||||| ||||||||||||||||| |||||||| |||||||||||||||             |||||||| ||| || ||||||||||    
T  49090568 gctctgatcacatgtgtcttaggaaggaatattttgagactttggctctaaaagaaggaggagttgctcgactcggaaataaaaaaagcgtgcaaagtcc 49090469  T
Q  105 aaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgct 204  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  49090468 aaggcatgggcaacgttcgtctaaagatgtttgatggctgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcctt 49090369  T
Q  205 aagcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaat 304  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49090368 aagcatgtttgatagtctaggttattgcactagaattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaat 49090269  T
Q  305 g 305  Q
    |    
T  49090268 g 49090268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 21644916 - 21644617
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    ||||||| |||||||||||||| ||||||||||||| |||||||  |||||||||||||||             |||||||| ||||| |||||||||||    
T  21644916 gctcttaccacatgtgtcctagaaaggaatattttgagactttgactctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 21644817  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  21644816 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcccta 21644717  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  21644716 agcatgtttgatagtctaggttattgcactagaattgagcatggggtttgtaaaatttcgcatggtgcattgattacggttgaggggtctaaaatgaatg 21644617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 9186353 - 9186652
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| ||| ||||||||| |||||||| |||||||||||||||             |||||||| ||||| |||||||||||    
T  9186353 gctcttatcacatgtgtcctagaaagaaatattttgagactttggctctaaaagaaggaggagttgtttgactcggaaataacaaagcgtgcaaagtcca 9186452  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||    
T  9186453 aggcatgggcatcgttcgtctaaagatgtttgatggccgtgaattccttttaaaggatgtgaagtttgttcccgaacttaagcgaaatttaatttcccta 9186552  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||||| ||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9186553 agcatgtttgatagtataggttattgcactagaattgagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 9186652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 16883806 - 16883507
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||| | ||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  16883806 gctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 16883707  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||    
T  16883706 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccata 16883607  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  16883606 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatg 16883507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 24262531 - 24262830
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||| | ||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  24262531 gctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 24262630  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||    
T  24262631 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccata 24262730  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  24262731 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatg 24262830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 26 - 305
Target Start/End: Original strand, 5818400 - 5818692
Alignment:
Q  26 tcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtccaaggcatg 112  Q
    ||||||||||||||||||| ||||||||| |||||||| |||||||||||||||             |||||||| ||| | ||||||||||||||||||    
T  5818400 tcacatgtgtcctaggaagaaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaaacttgcaaagtccaaggcatg 5818499  T
Q  113 ggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgt 212  Q
    || |||||||||||||||||||||||||| |||||||||||| ||| |||||||| |||||||||||||||| | |||||||||||||  ||||||||||    
T  5818500 ggaaacgttcgtctaaagatgtttgatggtcgtgaattccttctaacggatgtgacgtttgttcccgaacttgaacgaaatttaattttcctaagcatgt 5818599  T
Q  213 ttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    | |||||| ||||||||||||| | |||| ||||||| |||||| |||||| ||||| |||||| ||||| |||||||||||||| |||||||    
T  5818600 tagatagtataggttattgcactaaaattgagcatggagtttgtcaaattttgcatgatgcattcattacagttaaagggtctaagatgaatg 5818692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 19 - 79
Target Start/End: Complemental strand, 12405216 - 12405156
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg 79  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||    
T  12405216 gctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggagg 12405156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 300
Target Start/End: Original strand, 7071419 - 7071597
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || ||||||||||  ||||| |||||||| | ||||| ||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| |||    
T  7071419 cgtctcaaaatgtttgatgatcgtgatttccttttgaaggatgagaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtc 7071518  T
Q  222 taggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| |||||||| | |||| | | ||| ||    | |||||| |||||||||||| ||| || |||||||||||||||    
T  7071519 taggctattgcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatggctaaagggtctaaaat 7071597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 44013343 - 44013234
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || |||||||||| |||||| |||||||| | ||||||||||| | |||| |||||||||  ||||||||| ||  |||||||||||||| |||    
T  44013343 cgtcttaaaatgtttgatgaccgtgatttccttttgaaggatgtgaggtatattcctgaacttaagataaatttaatatctataagcatgtttgatggtc 44013244  T
Q  222 taggttattg 231  Q
    |||| |||||    
T  44013243 taggatattg 44013234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 300
Target Start/End: Complemental strand, 3323594 - 3323422
Alignment:
Q  128 aagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggtt 227  Q
    |||||||||||||  ||||| |||||||| | | ||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| ||||||| |    
T  3323594 aagatgtttgatgatcgtgatttccttttgaagaatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtctaggct 3323495  T
Q  228 attgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    ||||||| | |||| | | ||| ||    | |||||| |||||||||||| ||| || |||||||||| ||||    
T  3323494 attgcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatggctaaagggtctgaaat 3323422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 300
Target Start/End: Original strand, 25406791 - 25406960
Alignment:
Q  131 atgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttatt 230  Q
    ||||||||||  ||||| |||||||| | | ||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| ||||||| ||||    
T  25406791 atgtttgatgatcgtgatttccttttgaagaatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtctaggctatt 25406890  T
Q  231 gcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| | |||| | | ||| ||    | |||||| |||||||||||| ||| || |||||||||| ||||    
T  25406891 gcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatggctaaagggtctgaaat 25406960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 25352729 - 25352832
Alignment:
Q  131 atgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttatt 230  Q
    ||||||||||  ||||| |||||||| | | ||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| ||||||| ||||    
T  25352729 atgtttgatgatcgtgatttccttttgaagaatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtctaggctatt 25352828  T
Q  231 gcac 234  Q
    ||||    
T  25352829 gcac 25352832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 18866878 - 18867177
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  18866878 gctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 18866977  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  18866978 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttcccta 18867077  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  18867078 agcatgtttgataatctaggttattgcactagaattgagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaggggtctagaatgaatg 18867177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 18856483 - 18856782
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  18856483 gctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 18856582  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  18856583 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttcccta 18856682  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
     | |||||||||| ||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||| ||||||||    
T  18856683 tgtatgtttgataatctaggttattgcactagaattgagcatggggtttgtaaaattttgcatggtgcattgattacggttaaggggtctagaatgaatg 18856782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 35744269 - 35743969
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggaggg--------------gaaataataaagcatgcaaagtcc 104  Q
    |||| ||||||||||||||||| ||||||||||||| ||||||| |||||||||||||| ||              ||||||| ||||| ||||||||||    
T  35744269 gctcatatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaaggagttgttcgactcggaaataacaaagcttgcaaagtcc 35744170  T
Q  105 aaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgct 204  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |    
T  35744169 aaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccat 35744070  T
Q  205 aagcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaat 304  Q
    |||||||||||||| ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  35744069 aagcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacgattaaggggtctagaatgaat 35743970  T
Q  305 g 305  Q
    |    
T  35743969 g 35743969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 10685472 - 10685771
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||| | ||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  10685472 gctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 10685571  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||    
T  10685572 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccata 10685671  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  10685672 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatg 10685771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 26300229 - 26299930
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||| ||| ||||||||||||| |||||||  |||||||||||||||             |||||||| ||||| |||||||||||    
T  26300229 gctcttatcacatgtgtcatagaaaggaatattttgagactttgactctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 26300130  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||  ||    
T  26300129 aggcatgggcaacgttcgtgtaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttccata 26300030  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    | ||||||||||||||||||||||||||| | |||| | ||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||    
T  26300029 accatgtttgatagtctaggttattgcactagaattgaacatggggtttgtaaaatttcgtatggtgcattgattacggttaaggggtctaaaatgaatg 26299930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 23800726 - 23800784
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaagga 77  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  23800726 gctcttatcacatgtgtcttaggaaggaatattttgagactttggttctaaaagaagga 23800784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 83 - 231
Target Start/End: Original strand, 15945992 - 15946140
Alignment:
Q  83 aataataaagcatgcaaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaac 182  Q
    ||||||||||| |||||| | |||||  |||||| | | | ||| || |||||||||| |||||| |||||||| | | ||||||||| | ||||  |||    
T  15945992 aataataaagcttgcaaaattcaaggtttgggcaccatccatctcaaaatgtttgatgaccgtgatttccttttgaagaatgtgaggtatattcctaaac 15946091  T
Q  183 ttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttattg 231  Q
    ||||| |||||||||| ||  |||||||||||||| |||||||||||||    
T  15946092 ttaagagaaatttaatatctataagcatgtttgatggtctaggttattg 15946140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 300
Target Start/End: Original strand, 28892132 - 28892310
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || ||||||||||  ||||| |||||||| | ||||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| |||    
T  28892132 cgtctcaaaatgtttgatgatcgtgatttccttttgaaggatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtc 28892231  T
Q  222 taggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| |||||||| | |||| | | ||| ||    | |||||| |||||||||||| |||  | |||||||||||||||    
T  28892232 taggctattgcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatagctaaagggtctaaaat 28892310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 21038798 - 21038910
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || |||||||||| || ||| |||||||| | ||||||||||| | |||| ||||||| || ||||||||| ||  |||||||||||||| |||    
T  21038798 cgtctcaaaatgtttgatgaccatgatttccttttgaaggatgtgaggtatattcctgaacttaggcaaaatttaatatctataagcatgtttgatggtc 21038897  T
Q  222 taggttattgcac 234  Q
    |||| ||||||||    
T  21038898 taggctattgcac 21038910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 33034009 - 33034121
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || |||||| ||| |||||| |||||||| | || |||||||| | |||| ||||||||| |||||||||| ||  |||||||||||||| |||    
T  33034009 cgtctcaaaatgtttaatgaccgtgatttccttttgaagggtgtgaggtatattcctgaacttaagagaaatttaatatctataagcatgtttgatggtc 33034108  T
Q  222 taggttattgcac 234  Q
    |||| | ||||||    
T  33034109 taggattttgcac 33034121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 16756064 - 16755961
Alignment:
Q  131 atgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttatt 230  Q
    ||||||||||  ||||| |||||||| | | ||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| ||||||| ||||    
T  16756064 atgtttgatgatcgtgatttccttttgaagaatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtctaggctatt 16755965  T
Q  231 gcac 234  Q
    ||||    
T  16755964 gcac 16755961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 224
Target Start/End: Original strand, 28329285 - 28329378
Alignment:
Q  131 atgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctag 224  Q
    ||||||||||  ||||| |||||||| | | ||||||||| | |||| ||||||||| |||||||||| ||  |||||||||||||| ||||||    
T  28329285 atgtttgatgatcgtgatttccttttgaagaatgtgaggtatattcctgaacttaagagaaatttaatatccataagcatgtttgatggtctag 28329378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 9225612 - 9225911
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  9225612 gctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgtttgactcggaaataacaaagcttgcaaagtcca 9225711  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  9225712 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttcccta 9225811  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  9225812 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaggggtctagaatgaatg 9225911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 16625201 - 16625500
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||             |||||||| ||||| |||||||||||    
T  16625201 gctcttatcacatgtgtcctaggaaggaatattttgagactttggctctaaaagaaggaggagttgttcgaatcggaaataacaaagcgtgcaaagtcca 16625300  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||||||||||||||||||||||||||| |||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  16625301 aggcatgggcaacgttcgtctaaagatgtttgatgaccgtgaatttattttaagggatttgaggtttgttcccgaacttaagcgaaatttaatttcccta 16625400  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||||||||||||||||||| | |||| |||||| |||||||||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  16625401 agcatgtttgatagtctaggttattgcactagaattgagcatgaggtttgtaaagtttcgcatggtgcattgattacgattaaagagtctaaaatgaatg 16625500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 80 - 305
Target Start/End: Complemental strand, 5146709 - 5146486
Alignment:
Q  80 ggaaataataaagcatgcaaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccg 179  Q
    |||||||| ||||  |||||||||||||||| | ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  5146709 ggaaataacaaagtgtgcaaagtccaaggcacgagcaacgttcgtataaagatgtttgatggccgtgaaatccttttaagggatgtgaggttggttcccg 5146610  T
Q  180 aacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgat 279  Q
     |||||||| |||||||||||| |||||||||||||||||||||||||||||||| | |||| ||||||||||||||||||||  ||||| |||||||||    
T  5146609 cacttaagcaaaatttaatttccctaagcatgtttgatagtctaggttattgcactagaattgagcatggggtttgtaaaattgagcatgatgcattgat 5146510  T
Q  280 tacggttaaagggtctaaaatgaatg 305  Q
    |||||||  |||||||||||||||||    
T  5146509 tacggtt--agggtctaaaatgaatg 5146486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 122 - 300
Target Start/End: Original strand, 15313686 - 15313864
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || |||||||||| |||||| |||||||| | ||||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| |||    
T  15313686 cgtctcaaaatgtttgatgaccgtgatttccttttgaaggatgtgaggtatattcctgaacttaggagaaatttaatatctataagcatgtttgatggtc 15313785  T
Q  222 taggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| |||||||| | |||| | | ||| ||    | |||||| |||||||||||| |||  | |||||||||||||||    
T  15313786 taggctattgcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatagctaaagggtctaaaat 15313864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 122 - 231
Target Start/End: Original strand, 4559573 - 4559682
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || |||||||||| |||||| |||||||| | ||||||||||| | |||| ||||||||| |||||||||| ||  |||||||||||||| |||    
T  4559573 cgtctcaaaatgtttgatgaccgtgatttccttttgaaggatgtgaggtatattcctgaacttaagagaaatttaatatctataagcatgtttgatggtc 4559672  T
Q  222 taggttattg 231  Q
    |||| |||||    
T  4559673 tagggtattg 4559682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 54
Target Start/End: Complemental strand, 5146780 - 5146745
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttg 54  Q
    ||||||||| ||||||||||||||||||||||||||    
T  5146780 gctcttatcgcatgtgtcctaggaaggaatattttg 5146745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 15517 - 15816
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  15517 gctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 15616  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  15617 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccata 15716  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  15717 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatg 15816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 196; Significance: 1e-106; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 16263241 - 16262942
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagggg-------------aaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| |             |||||| ||||| |||||||||||    
T  16263241 gctcttatcacatgtgtcctaggaagaaatattttgagactttggctctaaaataaggaggagttgttcgactcagaaataacaaagcgtgcaaagtcca 16263142  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  16263141 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcccta 16263042  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||||||||||||||||||| | ||||  |||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||    
T  16263041 agcatgtttgatagtctaggttattgcactaaaatttggcatggggtttgtaaaatttcgaatggtgcattgataacgattaaagggtctaaaatgaatg 16262942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 3324744 - 3325043
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||| |||||||||||||||||||||||||||  ||||||| |||||||||||||||             |||||||| ||||||||||||| |||    
T  3324744 gctcttattacatgtgtcctaggaaggaatattttgatactttggctctaaaagaaggaggagttgtttgactcggaaataaaaaagcatgcaaagccca 3324843  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  3324844 aggcatgggcaccgttcgtctaaagatgtttgatggccgtgaattccttttaaaggatgtgaggtttgttcccgaacttaagcgaaatttaatttcccta 3324943  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||||| |||||||||| || | |||| ||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  3324944 agcatgtttgatagtataggttattgtactagaattgagcatggggtttgtaaaatctcacatggtgcattgattacggttaaagggtctaaaatgaatg 3325043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 2673428 - 2673727
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||| | ||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  2673428 gctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 2673527  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  ||    
T  2673528 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggttttttcccgaacttaagcgaaatttaatttccata 2673627  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  2673628 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatg 2673727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 28490381 - 28490680
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| || |||||||||| ||||||| |||| |||||||||||             |||||||| ||||| |||||||||||    
T  28490381 gctcttatcacatgtgtcctagaaatgaatattttgagactttgattcttaaagaaggaggagttgttcgacttggaaataacaaagcttgcaaagtcca 28490480  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |||    
T  28490481 aggtatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggttttttcccgaacttaagcgtaatttaatttcccta 28490580  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  |||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  28490581 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaggggtctagaatgaatg 28490680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 32479219 - 32478920
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||| | ||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  32479219 gctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 32479120  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||    
T  32479119 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccata 32479020  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  32479019 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatg 32478920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 8515973 - 8515674
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||| | ||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  8515973 gctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 8515874  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||    
T  8515873 aggcatgggaaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccata 8515774  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  8515773 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatg 8515674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 96 - 305
Target Start/End: Complemental strand, 1309660 - 1309451
Alignment:
Q  96 gcaaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaattt 195  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  1309660 gcaacgtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaattt 1309561  T
Q  196 aatttcgctaagcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtct 295  Q
    |||||| ||||||||||||||||| |||||||||||||| | |||| |||||||| ||||||||||||||||||||||||||||||||||||| || |||    
T  1309560 aatttccctaagcatgtttgatagcctaggttattgcactagaattgagcatgggatttgtaaaatttcgcatggtgcattgattacggttaagggatct 1309461  T
Q  296 aaaatgaatg 305  Q
    ||||||||||    
T  1309460 aaaatgaatg 1309451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 9603055 - 9603354
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagggg-------------aaataataaagcatgcaaagtcca 105  Q
    |||||||||| ||||||||||| ||||||||||||| |||||||| ||||| ||||||||  |             |||||| ||||| |||||||||||    
T  9603055 gctcttatcatatgtgtcctagaaaggaatattttgagactttggctctaagagaaggagaagttgttcgactcagaaataacaaagcgtgcaaagtcca 9603154  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    | |||||| |||  |||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||| |||    
T  9603155 aagcatggacaatattcgtctatagatgtttgatggccgtgaattccttttaaaggatgtgaggtttgctcccaaacttaagcgaaatttaatttcccta 9603254  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||    
T  9603255 agcatgtttgatagtctaggttattgcactagaattgagcatggggtttgtaaaatttcacatggtgcattgattatggttaaatggtctaaaatgaatg 9603354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 300
Target Start/End: Original strand, 10898373 - 10898551
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || ||||||||||  ||||| |||||||| | ||||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| |||    
T  10898373 cgtctcaaaatgtttgatgatcgtgatttccttttgaaggatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtc 10898472  T
Q  222 taggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| |||||||| | |||| | | ||| ||    | |||||| |||||||||||| |||  | |||||||||||||||    
T  10898473 taggctattgcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatagctaaagggtctaaaat 10898551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 300
Target Start/End: Complemental strand, 22624792 - 22624614
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || ||||||||||  ||||| |||||||| | ||||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| |||    
T  22624792 cgtctcaaaatgtttgatgatcgtgatttccttttgaaggatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtc 22624693  T
Q  222 taggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| |||||||| | |||| | | ||| ||    | |||||| |||||||||||| |||  | |||||||||||||||    
T  22624692 taggctattgcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatagctaaagggtctaaaat 22624614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 300
Target Start/End: Complemental strand, 29912768 - 29912590
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || ||||||||||  ||||| |||||||| | ||||||||||| | ||||  |||||| | |||||||||| ||  |||||||||||||| |||    
T  29912768 cgtctcaaaatgtttgatgatcgtgatttccttttgaaggatgtgaggtatattcctaaacttaggagaaatttaatatccataagcatgtttgatggtc 29912669  T
Q  222 taggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| |||||||| | |||| | | ||| ||    | |||||| ||||||||||||||||  | |||||||||||||||    
T  29912668 taggctattgcactagaattgaacgtggtgtgatgagaatttctcatggtgcattgattatagctaaagggtctaaaat 29912590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 122 - 300
Target Start/End: Original strand, 54189876 - 54190054
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || ||||||||||  ||||| |||||||| | ||||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| |||    
T  54189876 cgtctcaaaatgtttgatgatcgtgatttccttttgaaggatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtc 54189975  T
Q  222 taggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| |||||||| | |||| | | ||| ||    | |||||| |||||||||||| |||  | |||||||||||||||    
T  54189976 taggctattgcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatagctaaagggtctaaaat 54190054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 10097610 - 10097441
Alignment:
Q  131 atgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttatt 230  Q
    ||||||||||  ||||| |||||||| | | ||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| ||||||| ||||    
T  10097610 atgtttgatgatcgtgatttccttttgaagaatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtctaggctatt 10097511  T
Q  231 gcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| | |||| | | ||| ||    | |||||| |||||||||||| ||| || |||||||||||||||    
T  10097510 gcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatggctaaagggtctaaaat 10097441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 300
Target Start/End: Complemental strand, 10204495 - 10204326
Alignment:
Q  131 atgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttatt 230  Q
    ||||||||||  ||||| |||||||| | | ||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| ||||||| ||||    
T  10204495 atgtttgatgatcgtgatttccttttgaagaatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtctaggctatt 10204396  T
Q  231 gcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| | |||| | | ||| ||    | |||||| |||||||||||| ||| || |||||||||||||||    
T  10204395 gcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatggctaaagggtctaaaat 10204326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 300
Target Start/End: Complemental strand, 10611578 - 10611412
Alignment:
Q  134 tttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttattgca 233  Q
    ||||||| |||||| |||||||| | |||| |||||| | |||| ||||| ||| |||||||||| ||  |||||||||||||| ||||||| |||||||    
T  10611578 tttgatgcccgtgatttccttttgaaggatatgaggtatattcctgaactgaagagaaatttaatatctataagcatgtttgatggtctaggatattgca 10611479  T
Q  234 ccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    | | |||| | |||||  |    | |||||| |||||||||||| |||  | |||||||||||||||    
T  10611478 ctagaattgaacatggtatgatgagaatttctcatggtgcattggttatagctaaagggtctaaaat 10611412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 6304688 - 6304791
Alignment:
Q  131 atgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttatt 230  Q
    ||||||||||  ||||| |||||||| | | ||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| ||||||| ||||    
T  6304688 atgtttgatgatcgtgatttccttttgaagaatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtctaggctatt 6304787  T
Q  231 gcac 234  Q
    ||||    
T  6304788 gcac 6304791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 131 - 300
Target Start/End: Original strand, 16458842 - 16459011
Alignment:
Q  131 atgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttatt 230  Q
    ||||||||||  ||||| |||||||| | |||||||| || | |||| ||||||| | |||||||||| ||  ||||||||||||||  |||||| ||||    
T  16458842 atgtttgatgatcgtgatttccttttgaaggatgtgaagtatattcctgaacttaggagaaatttaatatccataagcatgtttgatgatctaggctatt 16458941  T
Q  231 gcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| | |||| | | ||| ||    | |||||| |||||||||||| |||  | |||||||||||||||    
T  16458942 gcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatagctaaagggtctaaaat 16459011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 47881701 - 47881592
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || |||||||||| || ||| || ||||| | ||||| ||||| | |||| ||||||||  |||||||||| ||  |||||||||||||| |||    
T  47881701 cgtctcaaaatgtttgatgaccttgatttgcttttgaaggatgcgaggtatattcctgaacttaaaagaaatttaatatctataagcatgtttgatggtc 47881602  T
Q  222 taggttattg 231  Q
    |||| |||||    
T  47881601 taggatattg 47881592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 27448701 - 27448402
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| || |||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  27448701 gctcttatcacatgtgtcctagaaatgaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 27448602  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||    
T  27448601 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgtaatttaatttcccta 27448502  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  |||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||||||    
T  27448501 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaggggtatagaatgaatg 27448402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 43596000 - 43595701
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  43596000 gctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 43595901  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||    
T  43595900 aggcatgggcaacgttcgtctaaatatgtttgatggccgtgaattccttttaagggatgtaaggtttgttcccgaacttaagcgtaatttaatttcccta 43595801  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  43595800 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcactgattacggttaaggggtctagaatgaatg 43595701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 43628794 - 43628495
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  43628794 gctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 43628695  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||    
T  43628694 aggcatgggcaacgttcgtctaaatatgtttgatggccgtgaattccttttaagggatgtaaggtttgttcccgaacttaagcgtaatttaatttcccta 43628595  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  |||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||    
T  43628594 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcactgattacggttaaggggtctagaatgaatg 43628495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 305
Target Start/End: Original strand, 24556794 - 24557091
Alignment:
Q  21 tcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtccaag 107  Q
    ||||||||||||| |||||  ||||||||||||| |||||||| |||||||||||||||             |||||||| ||||| |||||||||||||    
T  24556794 tcttatcacatgtatcctacaaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaagcgtgcaaagtccaag 24556893  T
Q  108 gcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaag 207  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||    
T  24556894 gcatgggcaccgttcgtctaaagatgtttgatagccgtgaattccttttaaaggatgtgaggtttgttcccgaacttaagcgaaatttaatttcccttag 24556993  T
Q  208 catgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| |||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24556994 catgtttgatagtttaggatattgcactagaattgagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 24557091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 21 - 305
Target Start/End: Original strand, 24597826 - 24598123
Alignment:
Q  21 tcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtccaag 107  Q
    ||||||||||||| |||||  ||||||||||||| |||||||| |||||||||||||||             |||||||| ||||| |||||||||||||    
T  24597826 tcttatcacatgtatcctacaaaggaatattttgagactttggctctaaaagaaggaggagttgttcgactcggaaataacaaagcgtgcaaagtccaag 24597925  T
Q  108 gcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaag 207  Q
    ||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||    
T  24597926 gcatgggcaccgttcgtctaaagatgtttgatagccgtgaattccttttaaaggatgtgaggtttgttcccgaacttaagcgaaatttaatttcccttag 24598025  T
Q  208 catgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| |||| |||||||| | |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24598026 catgtttgatagtttaggatattgcactagaattgagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 24598123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 80 - 305
Target Start/End: Complemental strand, 28837097 - 28836872
Alignment:
Q  80 ggaaataataaagcatgcaaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccg 179  Q
    |||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||    
T  28837097 ggaaataacaaagcatgcaaagtccaaggcatgggcaccgtttgtctaaagatgtttgatggccgtgaattccttttaaaggatgtgagatttgttcccg 28836998  T
Q  180 aacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgat 279  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||| ||||||||||||||||||||||||||||||    
T  28836997 aacttaagcgaaatttaatttccctaagcatgtttgatagtctaggttattgcactagaattgagcatgaggtttgtaaaatttcgcatggtgcattgat 28836898  T
Q  280 tacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||||||||||||||||    
T  28836897 tacggttaaagggtctaaaatgaatg 28836872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 37557832 - 37558131
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    ||||||||||||||  |||||| | ||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  37557832 gctcttatcacatgattcctagaatggaatattttgagactttgattctaaaagaaggaggaattgttcgactcggaaataacaaagcttgcaaagtcca 37557931  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  37557932 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccata 37558031  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||  |||| ||||||| ||||||||    
T  37558032 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattactattaaggggtctagaatgaatg 37558131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 31398200 - 31398499
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||| | ||||| |||||| |||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  31398200 gctcttatcacatgagccctagaaaggaacattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 31398299  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||    
T  31398300 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtatgttcccgaacttaagcgaaatttaatttccata 31398399  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||  | |||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  31398400 agcatgtttgataatctaggttattgcagtagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaatg 31398499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 151; E-Value: 7e-80
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 33790194 - 33789948
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  33790194 gctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 33790095  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  33790094 aggcatgggcaacgttcatctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccata 33789995  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggt 252  Q
    ||||||||||||| ||||||||||||||| | |||  ||||||||||    
T  33789994 agcatgtttgataatctaggttattgcactagaatagagcatggggt 33789948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 120 - 231
Target Start/End: Original strand, 10628725 - 10628836
Alignment:
Q  120 ttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatag 219  Q
    ||||||| || |||||||||| |||||| ||| |||| | | ||||||||| | |||| ||||||||| |||||||||| ||  |||||||||||||| |    
T  10628725 ttcgtctcaaaatgtttgatgaccgtgatttctttttgaagaatgtgaggtatattcctgaacttaagagaaatttaatatctataagcatgtttgatgg 10628824  T
Q  220 tctaggttattg 231  Q
    |||||| |||||    
T  10628825 tctaggatattg 10628836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 25446855 - 25446967
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || ||||||||||  ||||| |||||||| |  |||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| |||    
T  25446855 cgtctcaaaatgtttgatgatcgtgatttccttttgaatgatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtc 25446954  T
Q  222 taggttattgcac 234  Q
    |||| ||||||||    
T  25446955 taggctattgcac 25446967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 122 - 231
Target Start/End: Complemental strand, 31781272 - 31781163
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || |||||| ||| |||||| |||||||| | | |||||| || | |||| ||||||||| |||||||||| ||  ||||||||||| || |||    
T  31781272 cgtctcaaaatgtttaatgaccgtgatttccttttgaagaatgtgatgtatattcctgaacttaagagaaatttaatatctataagcatgtttaatggtc 31781173  T
Q  222 taggttattg 231  Q
    |||| |||||    
T  31781172 taggatattg 31781163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 19348157 - 19347858
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagggg-------------aaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| |||||||||||||||| |             |||||| ||||| |||||||||||    
T  19348157 gctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcagaaataacaaagcttgcaaagtcca 19348058  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  19348057 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccata 19347958  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||| ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  19347957 agcatgtttgataatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacgattaaggggtctagaatgaatg 19347858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 191 - 305
Target Start/End: Complemental strand, 25394580 - 25394466
Alignment:
Q  191 aatttaatttcgctaagcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaag 290  Q
    ||||||||||| |||||||||||||||||||||||||||||||| | |||| |||| |||||||||||||||| |||||||||||||||||||||||| |    
T  25394580 aatttaatttccctaagcatgtttgatagtctaggttattgcactagaattgagcacggggtttgtaaaattttgcatggtgcattgattacggttaagg 25394481  T
Q  291 ggtctaaaatgaatg 305  Q
    ||||| |||||||||    
T  25394480 ggtcttaaatgaatg 25394466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 234
Target Start/End: Complemental strand, 20053615 - 20053461
Alignment:
Q  80 ggaaataataaagcatgcaaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccg 179  Q
    ||||||||||| || || ||| | ||||| |||||||   | ||||| || |||||||||| |||||| |||||||| | ||||||||||| | |||| |    
T  20053615 ggaaataataaggcttgtaaaattcaaggtatgggcactatccgtctcaaaatgtttgatgaccgtgatttccttttgaaggatgtgaggtatattcctg 20053516  T
Q  180 aacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttattgcac 234  Q
    |||||| | |||||||||| ||  |||||||||||||| ||||||| ||||||||    
T  20053515 aacttaggagaaatttaatatctataagcatgtttgatggtctaggctattgcac 20053461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 131 - 234
Target Start/End: Original strand, 39683625 - 39683728
Alignment:
Q  131 atgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttatt 230  Q
    ||||||||||  ||||| |||||||| | | ||||||||| | |||| ||||||||| |||||||||| ||  |||||||||||||| ||||||| ||||    
T  39683625 atgtttgatgatcgtgatttccttttgaagaatgtgaggtatattcctgaacttaagagaaatttaatatccataagcatgtttgatggtctaggctatt 39683724  T
Q  231 gcac 234  Q
    ||||    
T  39683725 gcac 39683728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 131 - 300
Target Start/End: Original strand, 2737582 - 2737751
Alignment:
Q  131 atgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttatt 230  Q
    ||||||||||  ||||| |||||||| | | ||||||||| | ||||  |||||| | |||||||||| ||  |||||||||||||| ||||||| ||||    
T  2737582 atgtttgatgatcgtgatttccttttgaagaatgtgaggtatattcctaaacttaggagaaatttaatatccgtaagcatgtttgatggtctaggctatt 2737681  T
Q  231 gcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    |||| | |||| | | ||| ||    | |||||| |||||||||||| ||| || |||||||||||||||    
T  2737682 gcactagaattgaacgtggtgtgatgagaatttctcatggtgcattggttatggctaaagggtctaaaat 2737751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 10446633 - 10446693
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg 79  Q
    ||||||||||||||||||| ||||||||||||||||  ||||||| |||||||||| ||||    
T  10446633 gctcttatcacatgtgtcccaggaaggaatattttgatactttggctctaaaagaaagagg 10446693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 143 - 300
Target Start/End: Original strand, 17933510 - 17933667
Alignment:
Q  143 cgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttattgcaccataatta 242  Q
    ||||| |||||||| | |||||| |||| | |||| ||||||| | |||||||||| ||  |||||||||||||| ||||||| |||||||| | ||||     
T  17933510 cgtgatttccttttgaaggatgttaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtctaggctattgcactagaattg 17933609  T
Q  243 agcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaat 300  Q
    | | ||| ||    | |||||| |||||||||||| |||  | |||||||||||||||    
T  17933610 aacgtggtgtgatgagaatttctcatggtgcattggttatagctaaagggtctaaaat 17933667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 22716037 - 22715934
Alignment:
Q  131 atgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttatt 230  Q
    ||||||||||  ||||| |||||||| | |||||||| || | |||| ||||||| | |||||||||| ||  ||||||||||||||  |||||| ||||    
T  22716037 atgtttgatgatcgtgatttccttttgaaggatgtgaagtatattcctgaacttaggagaaatttaatatccataagcatgtttgatgttctaggctatt 22715938  T
Q  231 gcac 234  Q
    ||||    
T  22715937 gcac 22715934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Complemental strand, 25402529 - 25402486
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttg 62  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  25402529 gctcttatcacatgtgtcctagaaaggaatattttgagactttg 25402486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 1386 - 1088
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||| ||| || |||||||||| |||||||| |||||||||||||||             |||||||| || || |||||||||||    
T  1386 gctcttatcacatgtgtcttagaaatgaatattttgagactttggctctaaaagaaggaggagtagctcgactcggaaataacaaggcgtgcaaagtcca 1287  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  1286 aggcatgggcaacgttcgtctaaagatgtttgatggtcttgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcccta 1187  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||||||||||||||||||| | |||| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1186 agcatgtttgatagtctaggttattgcactagaattgagcatgcgg-ttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 1088  T

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Target: scaffold0006; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 170 - 305
Target Start/End: Complemental strand, 9378 - 9244
Alignment:
Q  170 tttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatg 269  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | |||| |||||| || |||||||||||||||||    
T  9378 tttgttcccgaacttaagcgaaatttaatttccctaagcatgtttgatagtctaggttattgcactagaattgagcatgcgg-ttgtaaaatttcgcatg 9280  T
Q  270 gtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||||||||||||||||||||||||||    
T  9279 gtgcattgattacggttaaagggtctaaaatgaatg 9244  T

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Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 19 - 303
Target Start/End: Complemental strand, 41397118 - 41396821
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||             |||||||| ||||| |||||||||||    
T  41397118 gctcttatcacatgtgtcctagaaaggaatattttgagactttgattctaaaagaaggaggagttgttcgactcggaaataacaaagcttgcaaagtcca 41397019  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||    
T  41397018 aggcatgggcaacgtttgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttccata 41396919  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaa 303  Q
    ||||||||||| | ||||||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||    
T  41396918 agcatgtttgacaatctaggttattgcactagaatagagcatggggtttgtaaaatttcgcatggtgcattgattacggtaaaggggtctagaatgaa 41396821  T

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Target: chr1; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 47100026 - 47100325
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagggg-------------aaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||| ||||||| ||||||||| |||||||| ||||||||||||||| |             |||||| ||||| |||||||||||    
T  47100026 gctcttatcacatgtgtcataggaagaaatattttgagactttggctctaaaagaaggaggagttgtttgactcgaaaataacaaagcgtgcaaagtcca 47100125  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    |||||||||||  |||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||    
T  47100126 aggcatgggcactgttcgtctaaagatgtttgatgaccgtgaattcctattaaaggatgtgaggtttgttcccgaacttaagcgaaatttaatttcccta 47100225  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||    
T  47100226 agcatgtttgatagtctaggttattgcactagaattgagcatggggtttgtaaaatttcgcatggtgtattgattacgattaaagggtctaaaatgaatg 47100325  T

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Target: chr1; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 83 - 305
Target Start/End: Original strand, 9025083 - 9025305
Alignment:
Q  83 aataataaagcatgcaaagtccaaggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaac 182  Q
    ||||| ||||| |||||||||||||||||||||| |||||||||||||||||||||| |  ||||||||||| ||||| |||||||||||||||||||||    
T  9025083 aataacaaagcttgcaaagtccaaggcatgggcaccgttcgtctaaagatgtttgattgttgtgaattccttctaaggtatgtgaggtttgttcccgaac 9025182  T
Q  183 ttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattac 282  Q
    ||| ||||||||||||||| |||| ||||||||||||||||| ||||||||  | |||| |  ||||||||| | |||||||||||||||| || |||||    
T  9025183 ttatgcgaaatttaatttccctaaacatgtttgatagtctagattattgcattagaattgaatatggggtttatgaaatttcgcatggtgctttaattac 9025282  T
Q  283 ggttaaagggtctaaaatgaatg 305  Q
      |||||||||||||||||||||    
T  9025283 tcttaaagggtctaaaatgaatg 9025305  T

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Target: chr1; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 122 - 234
Target Start/End: Complemental strand, 2400037 - 2399925
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || |||||||||| |||||| |||||||| | ||||||||||| | |||| ||||||||| |||||||||| |   |||||||||||||| |||    
T  2400037 cgtctcaaaatgtttgatgaccgtgatttccttttgaaggatgtgaggtatattcctgaacttaagagaaatttaatatttataagcatgtttgatggtc 2399938  T
Q  222 taggttattgcac 234  Q
    |||| ||||||||    
T  2399937 taggatattgcac 2399925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 19360046 - 19360106
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg 79  Q
    |||||||||||||||||||||| ||||||||||||| | |||||  |||||||||||||||    
T  19360046 gctcttatcacatgtgtcctagaaaggaatattttgaggctttgactctaaaagaaggagg 19360106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 9523096 - 9523208
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || ||||||||||  ||||| |||||||| |  ||| |||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| |||    
T  9523096 cgtctcaaaatgtttgatgatcgtgatttccttttgaatgatttgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtc 9523195  T
Q  222 taggttattgcac 234  Q
    |||| ||||||||    
T  9523196 taggctattgcac 9523208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 9025008 - 9025063
Alignment:
Q  21 tcttatcacatgtgtcctaggaaggaatattttgggac-tttggttctaaaagaag 75  Q
    |||||||||||||||||||| ||||||||||||  ||| ||||| |||||||||||    
T  9025008 tcttatcacatgtgtcctagaaaggaatattttaagacttttggctctaaaagaag 9025063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 51
Target Start/End: Original strand, 17346721 - 17346753
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatatt 51  Q
    ||||||||||||||||||||||||| |||||||    
T  17346721 gctcttatcacatgtgtcctaggaatgaatatt 17346753  T

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Target: scaffold0078 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 19 - 305
Target Start/End: Complemental strand, 35889 - 35590
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg-------------ggaaataataaagcatgcaaagtcca 105  Q
    |||||||||||||||||| || |||||||||||||| || ||||| |||||||||||||||             |||||||| ||||| |||||| ||||    
T  35889 gctcttatcacatgtgtcttatgaaggaatattttgagaatttggctctaaaagaaggaggagttgttcgactcggaaataaaaaagcttgcaaaatcca 35790  T
Q  106 aggcatgggcaacgttcgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgcta 205  Q
    || |||||||| ||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||   |    
T  35789 agtcatgggcaccgttcgtctaaagatctttgatggccgtgaattccttctaagagatgtgaggtttgttcccgaacttaagcgaaatttaatttccaga 35690  T
Q  206 agcatgtttgatagtctaggttattgcaccataattaagcatggggtttgtaaaatttcgcatggtgcattgattacggttaaagggtctaaaatgaatg 305  Q
    ||||||||| |||| |||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| ||||| |||| | |||||||||| ||||    
T  35689 agcatgttttataggctaggttattgcactataattgagcatggggtttgtaaaattttgcatggtgcattaattacagttataaggtctaaaattaatg 35590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0842 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0842
Description:

Target: scaffold0842; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 4402 - 4462
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg 79  Q
    |||||||||||||||||||||||||| ||||||||| |||||||| | |||||||||||||    
T  4402 gctcttatcacatgtgtcctaggaagaaatattttgagactttggctttaaaagaaggagg 4462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 122 - 234
Target Start/End: Original strand, 17693 - 17805
Alignment:
Q  122 cgtctaaagatgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtc 221  Q
    ||||| || |||||||||| |||||| |||||| | |  |||||||||| | |||| ||||||||| |||||||||| ||  |||||||||||||| |||    
T  17693 cgtctcaaaatgtttgatgaccgtgatttccttgtgaaagatgtgaggtatattcctgaacttaagagaaatttaatatccataagcatgtttgatggtc 17792  T
Q  222 taggttattgcac 234  Q
    |||| ||||||||    
T  17793 taggatattgcac 17805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 19 - 79
Target Start/End: Original strand, 150163 - 150223
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttggttctaaaagaaggagg 79  Q
    |||||||||||||| | ||||| ||||||||||||| ||||||| ||||||||||||||||    
T  150163 gctcttatcacatgagccctagaaaggaatattttgagactttgattctaaaagaaggagg 150223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 50010 - 49907
Alignment:
Q  131 atgtttgatggccgtgaattccttttaagggatgtgaggtttgttcccgaacttaagcgaaatttaatttcgctaagcatgtttgatagtctaggttatt 230  Q
    ||||||||||  ||||| |||||||| | | ||||||||| | |||| ||||||| | |||||||||| ||  |||||||||||||| ||||||| ||||    
T  50010 atgtttgatgatcgtgatttccttttgaagaatgtgaggtatattcctgaacttaggagaaatttaatatccataagcatgtttgatggtctaggctatt 49911  T
Q  231 gcac 234  Q
    ||||    
T  49910 gcac 49907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0188 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0188
Description:

Target: scaffold0188; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 19147 - 19190
Alignment:
Q  19 gctcttatcacatgtgtcctaggaaggaatattttgggactttg 62  Q
    |||||||||||||||||||||| ||||||||||||| |||||||    
T  19147 gctcttatcacatgtgtcctagaaaggaatattttgagactttg 19190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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