View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9603_low_2 (Length: 386)
Name: NF9603_low_2
Description: NF9603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9603_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 17 - 376
Target Start/End: Complemental strand, 53478902 - 53478543
Alignment:
| Q |
17 |
cagttgtgacacactttggatgcacttcatagccacattgaagacattgataggcccaattagacccttgttcatcacagacacaacaaatgaagggccc |
116 |
Q |
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| T |
53478902 |
cagttgtgacacactttggatgcacttcatagccacattgaagacattgataggcccaattagacccttgttcatcacagacacaacaaatgaagggccc |
53478803 |
T |
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| Q |
117 |
tcccccatttccatcagacactaaattaagtccatgatggtgcccttcatgatgcaccaaatttggaagatccttagcctcttcttcaagttgtttctct |
216 |
Q |
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| T |
53478802 |
tcccccatttccatcagacactaaattaagtccatgatggtgcccttcatgatgcaccaaatttggaagatccttagcctcttcttcaagttgtttctct |
53478703 |
T |
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| Q |
217 |
agctgctccacttttgaagcagtgaaagggtaagcattttcttggtacaaatttattaagtttcttccatgtattgttattgttttaccatcaggaccta |
316 |
Q |
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| T |
53478702 |
agctgctccacttttgaagcagtgaaagggtaagcattttcttggtacaaatttattaagtttcttccatgtattgttattgttttaccatcaggaccta |
53478603 |
T |
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| Q |
317 |
taattaccaaacaaggtatcccttgtacatcaaagtgtcttgcaaggttctttatctctg |
376 |
Q |
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| T |
53478602 |
taattaccaaacaaggtatcccttgtacatcaaagtgtcttgcaaggttctttatctctg |
53478543 |
T |
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