View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9603_low_3 (Length: 348)
Name: NF9603_low_3
Description: NF9603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9603_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 28 - 340
Target Start/End: Original strand, 29651154 - 29651466
Alignment:
| Q |
28 |
tgatcatcttttctgcatgatgtaaccttgttttattaacacgaagcacaccaccttctggattgcattttcttgaagacttattgaacaaatcttccat |
127 |
Q |
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| T |
29651154 |
tgatcatcttttctgcatgatgcaaccttgttttattaacacgaagcacaccaccttctggattgcattttcttgaagacttattgaacaaatcttccat |
29651253 |
T |
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| Q |
128 |
tacaaggtaactaatttctgaaaaggtttgagaaggtgttgtcaaaggaatgtttatcctcacattctttccttggccactaagaaaatggccagataat |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29651254 |
tacaaggtaactaatttctgaaaaggtttgagaaggtgttgtcaaaggaatgtttatcctcacattctttccttggccactaagaaaatggccagataat |
29651353 |
T |
|
| Q |
228 |
gtcctcaatttaccatcttcccatttcaaatccattgatttatcctcttcattttcatttgattcagtaaaattctcttctattttctccaaatcctctg |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29651354 |
gtcctcaatttaccatcttcccatttcaaatccattgatttatcctcttcattttcatttgattcagtaaaattctcttctattttctccaaatcctctg |
29651453 |
T |
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| Q |
328 |
tttgttctctgct |
340 |
Q |
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||||||||||||| |
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| T |
29651454 |
tttgttctctgct |
29651466 |
T |
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