View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9603_low_6 (Length: 254)

Name: NF9603_low_6
Description: NF9603
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9603_low_6
NF9603_low_6
[»] chr8 (4 HSPs)
chr8 (24-254)||(29651446-29651684)
chr8 (24-136)||(29651708-29651820)
chr8 (99-136)||(29651844-29651881)
chr8 (18-78)||(16330973-16331033)
[»] chr6 (3 HSPs)
chr6 (34-85)||(32931491-32931542)
chr6 (33-90)||(2468468-2468525)
chr6 (33-82)||(16295535-16295584)
[»] chr3 (2 HSPs)
chr3 (33-84)||(14032926-14032977)
chr3 (112-146)||(10794606-10794640)
[»] chr4 (3 HSPs)
chr4 (33-90)||(27131668-27131725)
chr4 (34-82)||(21606597-21606645)
chr4 (44-92)||(22402401-22402449)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 24 - 254
Target Start/End: Complemental strand, 29651684 - 29651446
Alignment:
Q  24 tagacgctagtaatattttaagaaaatagaagtgattaaacgtaacaacatgtgttggtgtcatgttagacactaacacatattggatactgaacacgcc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  29651684 tagacgctagtaatattttaagaaaatagaagtgattaaacgtaacaacatgtgttagtgtcatgttagacactaacacatattggatactgaacacgca 29651585  T
Q  124 ttcaatatgaagtgtcggtgctagaatatatcatatgttttaa--------atttatttatgatgtgaatgtgaatctaatactctgtatactggatgca 215  Q
    || |||||||||||| ||||||||||||||| |||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29651584 tttaatatgaagtgttggtgctagaatatattatatgttttaaatatatttatttatttatgatgtgaatgtgaatctaatactctgtatactggatgca 29651485  T
Q  216 gaggaagactctgttaggagcagagaacaaacagaggat 254  Q
    |||||||||||||||||||||||||||||||||||||||    
T  29651484 gaggaagactctgttaggagcagagaacaaacagaggat 29651446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 29651820 - 29651708
Alignment:
Q  24 tagacgctagtaatattttaagaaaatagaagtgattaaacgtaacaacatgtgttggtgtcatgttagacactaacacatattggatactgaacacgcc 123  Q
    |||| |||| ||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||| ||||||| |||||| ||||| ||||||||||||    
T  29651820 tagatgctattaatagtttaagaaaatagaagtgattgaacgtaacaacatgtgttggtgtcgtgtcagacactgacacatgttggacactgaacacgcc 29651721  T
Q  124 ttcaatatgaagt 136  Q
    |||||||||||||    
T  29651720 ttcaatatgaagt 29651708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 99 - 136
Target Start/End: Complemental strand, 29651881 - 29651844
Alignment:
Q  99 acacatattggatactgaacacgccttcaatatgaagt 136  Q
    |||||| ||||| |||||||||||||||||||||||||    
T  29651881 acacatgttggacactgaacacgccttcaatatgaagt 29651844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 16330973 - 16331033
Alignment:
Q  18 gacatctagacgctagtaatattttaagaaaatagaagtgattaaacgtaacaacatgtgt 78  Q
    ||||| ||||| ||||||||| |||||||||||  || |||||||| ||||| ||||||||    
T  16330973 gacatgtagacactagtaataatttaagaaaatgaaaatgattaaatgtaaccacatgtgt 16331033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 34 - 85
Target Start/End: Complemental strand, 32931542 - 32931491
Alignment:
Q  34 taatattttaagaaaatagaagtgattaaacgtaacaacatgtgttggtgtc 85  Q
    ||||| ||||||||||||||||||||||||  |||| |||||||| ||||||    
T  32931542 taataatttaagaaaatagaagtgattaaatataactacatgtgtcggtgtc 32931491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 2468525 - 2468468
Alignment:
Q  33 gtaatattttaagaaaatagaagtgattaaacgtaacaacatgtgttggtgtcatgtt 90  Q
    |||||| ||||||||||| ||||| ||| || ||||| ||||||||||||||| ||||    
T  2468525 gtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcgtgtt 2468468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 16295535 - 16295584
Alignment:
Q  33 gtaatattttaagaaaatagaagtgattaaacgtaacaacatgtgttggt 82  Q
    |||||| ||| |||||||||| |||||| |||||||| ||||||||||||    
T  16295535 gtaataattttagaaaatagaggtgattgaacgtaactacatgtgttggt 16295584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 84
Target Start/End: Original strand, 14032926 - 14032977
Alignment:
Q  33 gtaatattttaagaaaatagaagtgattaaacgtaacaacatgtgttggtgt 84  Q
    |||||| |||||||||||||||||||||||   ||||||||| |||||||||    
T  14032926 gtaataatttaagaaaatagaagtgattaagtataacaacatatgttggtgt 14032977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 10794606 - 10794640
Alignment:
Q  112 actgaacacgccttcaatatgaagtgtcggtgcta 146  Q
    |||||||||| ||||||||||||||||||||||||    
T  10794606 actgaacacgtcttcaatatgaagtgtcggtgcta 10794640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000009; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 27131725 - 27131668
Alignment:
Q  33 gtaatattttaagaaaatagaagtgattaaacgtaacaacatgtgttggtgtcatgtt 90  Q
    |||||| ||||||||||| ||||| ||| || ||||| ||||||||||||||| ||||    
T  27131725 gtaataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggtgtcgtgtt 27131668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 34 - 82
Target Start/End: Complemental strand, 21606645 - 21606597
Alignment:
Q  34 taatattttaagaaaatagaagtgattaaacgtaacaacatgtgttggt 82  Q
    ||||| |||||||||||| ||||||||||  ||||| ||||||||||||    
T  21606645 taataatttaagaaaataaaagtgattaagtgtaactacatgtgttggt 21606597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 92
Target Start/End: Original strand, 22402401 - 22402449
Alignment:
Q  44 agaaaatagaagtgattaaacgtaacaacatgtgttggtgtcatgttag 92  Q
    ||||||||||||||||| || ||||| |||||||| |||||| ||||||    
T  22402401 agaaaatagaagtgattgaatgtaaccacatgtgtcggtgtcgtgttag 22402449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University