View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_high_12 (Length: 227)
Name: NF9604_high_12
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_high_12 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13234297 - 13234071
Alignment:
| Q |
1 |
tgattccttgtaaggtattttttggattgtggaacattgttgccatcataactcccatgaaggtgaggaccattagtcttgatagaaaaagctcgggggt |
100 |
Q |
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| T |
13234297 |
tgattccttgtaaggtattttttggattgtggaacattgttgccatcataactcccatgaaggtgaggaccattagtcttgatagaaaaagctcgggggt |
13234198 |
T |
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| Q |
101 |
tctccgtatgatggtgaagttgcggcgaattaggatccatgtctctgctatgtaggaatttgcaaactttggacctagatgttcttgtgagctattggtt |
200 |
Q |
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| T |
13234197 |
tctccgtatgtttgtgaagttgcggcgcattaggatccatgtctctcctatgtaggaatttgcaaactttggacctagatgttcttgtgagctatttgtt |
13234098 |
T |
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| Q |
201 |
ggtgtaaggtagtcattctcgtcgact |
227 |
Q |
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| T |
13234097 |
ggtgtaaggtagtcattctcgtcgact |
13234071 |
T |
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