View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9604_high_4 (Length: 454)

Name: NF9604_high_4
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9604_high_4
NF9604_high_4
[»] chr1 (22 HSPs)
chr1 (18-434)||(38226643-38227058)
chr1 (151-263)||(27782086-27782198)
chr1 (151-263)||(27777761-27777873)
chr1 (52-252)||(17700032-17700232)
chr1 (52-228)||(17663772-17663948)
chr1 (319-429)||(17663556-17663666)
chr1 (52-252)||(22663342-22663542)
chr1 (319-429)||(17700313-17700423)
chr1 (368-434)||(38227136-38227202)
chr1 (329-406)||(27777591-27777668)
chr1 (329-406)||(27782293-27782370)
chr1 (265-406)||(27781234-27781383)
chr1 (371-434)||(38227211-38227274)
chr1 (368-434)||(27777494-27777560)
chr1 (368-422)||(27781023-27781077)
chr1 (368-434)||(27782401-27782467)
chr1 (368-434)||(38227064-38227130)
chr1 (162-263)||(21898920-21899020)
chr1 (228-263)||(27781404-27781439)
chr1 (343-434)||(21899130-21899221)
chr1 (52-134)||(3489860-3489942)
chr1 (368-404)||(27781080-27781116)
[»] chr4 (4 HSPs)
chr4 (298-429)||(35250109-35250240)
chr4 (137-263)||(35249909-35250037)
chr4 (343-429)||(51220010-51220096)
chr4 (343-429)||(51220797-51220883)
[»] chr7 (2 HSPs)
chr7 (343-426)||(440904-440987)
chr7 (349-381)||(440807-440839)


Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 434
Target Start/End: Original strand, 38226643 - 38227058
Alignment:
Q  18 aaatgtatattggtgacccatttagtgctcacgttaaactcatctagacattcttcaaaacaagcagcatctccttcaatttcaaccctcaactccatca 117  Q
    |||||||||||||||||||||||| ||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38226643 aaatgtatattggtgacccatttaatgctcagttaaaactcatctagacattcttcaaaacaagcagcatctccttcaatttcaaccctcaactccatca 38226742  T
Q  118 tattttcatacttatttagtgcaaataacctagttagtttaactcaaacaaaattagaagattaagacaaatgtaaaaggtgtaaattgataaactaaac 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38226743 tattttcatacttatttagtgcaaataacctagttagtttaactcaaacaaaattagaagattaagacaaatgtaaaaggtgtaaattgataaactaaac 38226842  T
Q  218 tttatatatatcttgtaagcaaattgctcaataattcatgatgatacattacatgacaacgtcaagggtgtccatcccatcataatatcattcaaaatca 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38226843 tttatatatatcttgtaagcaaattgctcaataattcatgatgatacattacatgacaacgtcaagggtgtccatcccatcataatatcattaaaaatca 38226942  T
Q  318 caaaaaagatataaactaagacgaaacactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccc 417  Q
    ||||||| |||||||||| ||||| |||||| ||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38226943 caaaaaa-atataaactatgacgagacactaattggttttatcttcaaactcatcacttggaagctcgttcaaatctaaattcttcacaacttttgaccc 38227041  T
Q  418 taattcagtttcgcctt 434  Q
    | |||||||||| ||||    
T  38227042 tgattcagtttcacctt 38227058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 151 - 263
Target Start/End: Original strand, 27782086 - 27782198
Alignment:
Q  151 ttagtttaactcaaacaaaattagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaata 250  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  27782086 ttagtttcactcaaacaaaactagaagattaagacaaatgtaaaaggtggaaattgataaactaaactttatatatatcttgtaagcgaattgctcaata 27782185  T
Q  251 attcatgatgata 263  Q
    |||||||||||||    
T  27782186 attcatgatgata 27782198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 151 - 263
Target Start/End: Complemental strand, 27777873 - 27777761
Alignment:
Q  151 ttagtttaactcaaacaaaattagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaata 250  Q
    ||||||| ||||||||||||  |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27777873 ttagtttcactcaaacaaaacaagaagattaagacaaatgtaaaagatggaaattgataaactaaactttatatatatcttgtaagcaaattgctcaata 27777774  T
Q  251 attcatgatgata 263  Q
    |||||||||||||    
T  27777773 attcatgatgata 27777761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 52 - 252
Target Start/End: Original strand, 17700032 - 17700232
Alignment:
Q  52 taaactcatctagacattcttcaaaacaagcagcatctccttcaatttcaaccctcaactccatcatattttcatacttatttagtgcaaataacctagt 151  Q
    |||||||||||||| ||| ||| ||| ||||| ||||||| | ||||||||||||||| ||||| |||||||||||||   |||||||| |||||||| |    
T  17700032 taaactcatctagaaatttttccaaataagcaacatctccattaatttcaaccctcaattccattatattttcatactagcttagtgcacataacctatt 17700131  T
Q  152 tagtttaactcaaacaaaattagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataa 251  Q
    ||| || || ||||||||||||||||||||||||||    |||||||| |||||||||| ||||| |||||||||||| ||| |||||| || |||||||    
T  17700132 tagattcacacaaacaaaattagaagattaagacaaccacaaaaggtggaaattgataatctaaaatttatatatatcgtgtcagcaaactgttcaataa 17700231  T
Q  252 t 252  Q
    |    
T  17700232 t 17700232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 52 - 228
Target Start/End: Complemental strand, 17663948 - 17663772
Alignment:
Q  52 taaactcatctagacattcttcaaaacaagcagcatctccttcaatttcaaccctcaactccatcatattttcatacttatttagtgcaaataacctagt 151  Q
    |||||||||||||||||| ||| ||| ||||| ||||||| ||||||||||||||||| ||||| ||||||| | |||   ||| |||| |||||||| |    
T  17663948 taaactcatctagacatttttccaaataagcaacatctccatcaatttcaaccctcaattccattatatttttacactagcttactgcacataacctatt 17663849  T
Q  152 tagtttaactcaaacaaaattagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatat 228  Q
    |||  | || |||||||||||||||||||||||||||   |||||||| ||||||| || ||||| |||||||||||    
T  17663848 tagaatcacacaaacaaaattagaagattaagacaaacacaaaaggtggaaattgaaaatctaaaatttatatatat 17663772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 319 - 429
Target Start/End: Complemental strand, 17663666 - 17663556
Alignment:
Q  319 aaaaaagatataaactaagacgaaacactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccct 418  Q
    |||||| ||||||||  | | ||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| |||||| | |||||| ||||||||    
T  17663666 aaaaaaaatataaacataaaagaaacactaattggtttcatcttcaaaatcatcacttggaagctcattcaaatcaaaattcctgacaactcttgaccct 17663567  T
Q  419 aattcagtttc 429  Q
    ||||| |||||    
T  17663566 aattcggtttc 17663556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 52 - 252
Target Start/End: Original strand, 22663342 - 22663542
Alignment:
Q  52 taaactcatctagacattcttcaaaacaagcagcatctccttcaatttcaaccctcaactccatcatattttcatacttatttagtgcaaataacctagt 151  Q
    |||| ||||||| ||||||||| ||| ||  ||||||||| ||||||  ||||||| ||| |||| ||||||||| || ||||||||||||| ||| | |    
T  22663342 taaattcatctaaacattcttccaaataaatagcatctccatcaattcaaaccctctacttcatcctattttcatgctaatttagtgcaaattaccaatt 22663441  T
Q  152 tagtttaactcaaacaaaattagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataa 251  Q
      | || || ||||||||||||||||||||| |||||   |||||||| |||| ||||| |||||  || |||||||  ||||| |||| |||| |||||    
T  22663442 atgattcacacaaacaaaattagaagattaacacaaacacaaaaggtggaaatggataacctaaaaattttatatattctgtaaacaaactgctaaataa 22663541  T
Q  252 t 252  Q
    |    
T  22663542 t 22663542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 319 - 429
Target Start/End: Original strand, 17700313 - 17700423
Alignment:
Q  319 aaaaaagatataaactaagacgaaacactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccct 418  Q
    |||||| ||||||||  | | ||||||||| ||| ||||||||||||| ||||||||||||||||| || ||||| | |||| | |||||| ||||||||    
T  17700313 aaaaaaaatataaacagaaaagaaacactaattgttttcatcttcaaaatcatcacttggaagctcattcaaatcaacattcctgacaactcttgaccct 17700412  T
Q  419 aattcagtttc 429  Q
    ||||| |||||    
T  17700413 aattcggtttc 17700423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 368 - 434
Target Start/End: Original strand, 38227136 - 38227202
Alignment:
Q  368 tcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgcctt 434  Q
    |||||||||||||||||||| ||||| | |||||| |||||||||||||||||||||||||| ||||    
T  38227136 tcatcacttggaagctcgttcaaatcaacattcttaacaacttttgaccctaattcagtttcacctt 38227202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 329 - 406
Target Start/End: Complemental strand, 27777668 - 27777591
Alignment:
Q  329 taaactaagacgaaacactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcaca 406  Q
    ||||| ||||||| |||||| ||||||||||||||| | |||||||||| || |||||| ||||||||||||||||||    
T  27777668 taaaccaagacgagacactaattggtttcatcttcacaatcatcacttgtaaactcgttcaaatctaaattcttcaca 27777591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 329 - 406
Target Start/End: Original strand, 27782293 - 27782370
Alignment:
Q  329 taaactaagacgaaacactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcaca 406  Q
    ||||| ||||||| |||||| ||||||||||||||| | |||||||||| || |||||| ||||||||||||||||||    
T  27782293 taaaccaagacgagacactaattggtttcatcttcacaatcatcacttgaaaactcgttcaaatctaaattcttcaca 27782370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 265 - 406
Target Start/End: Complemental strand, 27781383 - 27781234
Alignment:
Q  265 attacatgacaacgtcaagggtgtccatcccat--------cataatatcattcaaaatcacaaaaaagatataaactaagacgaaacactagttggttt 356  Q
    ||||||||||||| |||||||| ||||||||||        ||||||||||||||||||||  |||||||||||||||||||||| || |||  |   ||    
T  27781383 attacatgacaacatcaagggtatccatcccataaaaaattcataatatcattcaaaatcattaaaaagatataaactaagacgagacgctaaatatctt 27781284  T
Q  357 catcttcaaactcatcacttggaagctcgtttaaatctaaattcttcaca 406  Q
    |||||||||| | ||  ||||||||| ||||  |||| ||||||||||||    
T  27781283 catcttcaaaattatttcttggaagcacgttcgaatcaaaattcttcaca 27781234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 371 - 434
Target Start/End: Original strand, 38227211 - 38227274
Alignment:
Q  371 tcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgcctt 434  Q
    ||||||| ||||||||| ||||| | ||||||||||||||||||||||||||||||||| ||||    
T  38227211 tcacttgaaagctcgttcaaatcaacattcttcacaacttttgaccctaattcagtttcacctt 38227274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 434
Target Start/End: Complemental strand, 27777560 - 27777494
Alignment:
Q  368 tcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgcctt 434  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||| ||||    
T  27777560 tcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcacctt 27777494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 422
Target Start/End: Complemental strand, 27781077 - 27781023
Alignment:
Q  368 tcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaatt 422  Q
    |||||||||||||||||||  ||||| ||||||||||||||||||||||||||||    
T  27781077 tcatcacttggaagctcgtccaaatcaaaattcttcacaacttttgaccctaatt 27781023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 434
Target Start/End: Original strand, 27782401 - 27782467
Alignment:
Q  368 tcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgcctt 434  Q
    |||| ||||||||||||||| ||||| ||||||||||||||||||||||||| ||| ||||| ||||    
T  27782401 tcattacttggaagctcgttcaaatcaaaattcttcacaacttttgaccctagttctgtttcacctt 27782467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 368 - 434
Target Start/End: Original strand, 38227064 - 38227130
Alignment:
Q  368 tcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgcctt 434  Q
    |||||||||||||| ||||| ||||| |||||||||||| |||||||||||||||||| ||| ||||    
T  38227064 tcatcacttggaagttcgttcaaatcaaaattcttcacatcttttgaccctaattcagcttcacctt 38227130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 162 - 263
Target Start/End: Original strand, 21898920 - 21899020
Alignment:
Q  162 caaacaaaattagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgtaagcaaattgctcaataattcatgatga 261  Q
    |||||||||||||||||||||||||||   |||||||| |||||||| ||| ||| |||||||| ||| ||| |||||| || |||||||| ||| ||||    
T  21898920 caaacaaaattagaagattaagacaaacacaaaaggtggaaattgat-aaccaaaatttatataaatcgtgtcagcaaactgttcaataatccataatga 21899018  T
Q  262 ta 263  Q
    ||    
T  21899019 ta 21899020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 263
Target Start/End: Complemental strand, 27781439 - 27781404
Alignment:
Q  228 tcttgtaagcaaattgctcaataattcatgatgata 263  Q
    ||||||||||||||||||||||||||||||||||||    
T  27781439 tcttgtaagcaaattgctcaataattcatgatgata 27781404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 343 - 434
Target Start/End: Original strand, 21899130 - 21899221
Alignment:
Q  343 acactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttcgcctt 434  Q
    |||||| ||||||||||||||||| || ||||||| || ||| || ||||| |||||| |   |||| ||||||||||||| ||||| ||||    
T  21899130 acactaattggtttcatcttcaaaatcgtcacttgaaatctcattcaaatcaaaattcatagaaactcttgaccctaattcggtttcacctt 21899221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 3489942 - 3489860
Alignment:
Q  52 taaactcatctagacattcttcaaaacaagcagcatctccttcaatttcaaccctcaactccatcatattttcatacttattt 134  Q
    |||||| |||||||||||| || ||  | ||||||||||| | |||||||||  |||| ||||||||| ||||||||| ||||    
T  3489942 taaactgatctagacattcctccaacgaggcagcatctccatgaatttcaactgtcaagtccatcatactttcatactgattt 3489860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 27781116 - 27781080
Alignment:
Q  368 tcatcacttggaagctcgtttaaatctaaattcttca 404  Q
    |||||||||||||||||||| ||||| ||||||||||    
T  27781116 tcatcacttggaagctcgttcaaatcaaaattcttca 27781080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 298 - 429
Target Start/End: Original strand, 35250109 - 35250240
Alignment:
Q  298 cataatatcattcaaaatcacaaaaaagatataaactaagacgaaacactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaa 397  Q
    ||||||||||||||||||||  |||||||||||||| ||||||| |||||| |||| |||||||||||| |||||||||| ||||||||| ||||| |||    
T  35250109 cataatatcattcaaaatcattaaaaagatataaaccaagacgagacactaattggattcatcttcaaaatcatcacttgcaagctcgttcaaatcaaaa 35250208  T
Q  398 ttcttcacaacttttgaccctaattcagtttc 429  Q
    |||||||||||||||||||| | |||||||||    
T  35250209 ttcttcacaacttttgacccgatttcagtttc 35250240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 137 - 263
Target Start/End: Original strand, 35249909 - 35250037
Alignment:
Q  137 tgcaaataacctagttagttta--actcaaacaaaattagaagattaagacaaatgtaaaaggtgtaaattgataaactaaactttatatatatcttgta 234  Q
    ||||||||||||| |||||||   |||||||||||||||||||| |||||||||||||||||||   ||||||||| ||||||| ||||||||| |||||    
T  35249909 tgcaaataacctacttagtttctcactcaaacaaaattagaagactaagacaaatgtaaaaggtaataattgataatctaaactctatatatatgttgta 35250008  T
Q  235 agcaaattgctcaataattcatgatgata 263  Q
    |||||||||||||||||||||||||||||    
T  35250009 agcaaattgctcaataattcatgatgata 35250037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 429
Target Start/End: Original strand, 51220010 - 51220096
Alignment:
Q  343 acactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttc 429  Q
    |||||| ||||||||||||||||| ||||||||||||||||| ||  |||| |||||| | |||||| |||||||||||||||||||    
T  51220010 acactaattggtttcatcttcaaaatcatcacttggaagctcattcgaatcaaaattcataacaactattgaccctaattcagtttc 51220096  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 343 - 429
Target Start/End: Original strand, 51220797 - 51220883
Alignment:
Q  343 acactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagtttc 429  Q
    ||||||||||||||||||||||||  ||||||||||||||||||| || || |||||| | |||| | |||||||||||||||||||    
T  51220797 acactagttggtttcatcttcaaaaccatcacttggaagctcgttcaattcaaaattcataacaattattgaccctaattcagtttc 51220883  T

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Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 343 - 426
Target Start/End: Original strand, 440904 - 440987
Alignment:
Q  343 acactagttggtttcatcttcaaactcatcacttggaagctcgtttaaatctaaattcttcacaacttttgaccctaattcagt 426  Q
    |||||| || |||||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||    
T  440904 acactaattagtttcatcttcaaagtcatcacttggaagctcgttcaaatcaaaattcttcacaacttttggccctaattcagt 440987  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 349 - 381
Target Start/End: Original strand, 440807 - 440839
Alignment:
Q  349 gttggtttcatcttcaaactcatcacttggaag 381  Q
    |||||||||||||||||| ||||||||||||||    
T  440807 gttggtttcatcttcaaaatcatcacttggaag 440839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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