View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9604_low_10 (Length: 495)

Name: NF9604_low_10
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9604_low_10
NF9604_low_10
[»] chr5 (5 HSPs)
chr5 (154-477)||(35508973-35509297)
chr5 (4-134)||(35509294-35509424)
chr5 (262-304)||(39153939-39153981)
chr5 (421-470)||(35522715-35522764)
chr5 (426-472)||(35552286-35552332)
[»] chr3 (5 HSPs)
chr3 (424-470)||(31653366-31653412)
chr3 (426-470)||(31703710-31703754)
chr3 (427-472)||(31710084-31710129)
chr3 (427-472)||(31011207-31011252)
chr3 (262-290)||(44800840-44800868)
[»] chr4 (2 HSPs)
chr4 (334-398)||(48362736-48362800)
chr4 (262-304)||(48362821-48362863)
[»] chr8 (1 HSPs)
chr8 (331-403)||(20081456-20081528)
[»] chr2 (1 HSPs)
chr2 (262-290)||(44643234-44643262)


Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 154 - 477
Target Start/End: Complemental strand, 35509297 - 35508973
Alignment:
Q  154 catgctgacatgcatactagattgctccacatcagaaaacagctgaatgatgtgactcaggtttcaaaaagctcccactattattccatttccatgaaaa 253  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  35509297 catgctgacatgcatactagattgctccacatcagaaaacagctgaatgatgtgactcaggtttcaaaaagctcccactatcattccatttccatgaaaa 35509198  T
Q  254 gaaacaccactttctaacaacattttcaatttttactctatatgtgggtggtcaaaccaaaa-tgacattttgctacaaattttcctttttaattgtgat 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||    
T  35509197 gaaacaccactttctaacaacattttcaatttttactctatatgtgggtggtcaaaccaaaaatgacattttgttacaaattttcctttttaattgtgat 35509098  T
Q  353 agagagaaaatgaaagctaatttgaaagaaagcatttccgaaaacatcgaaagcaggttggtgacagttccctaacctgcatattgaatgcaaccatctg 452  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35509097 agagagaaaatgaaagctaatttgaaagaaagcatttccgaaaacatcgaaagcaggttggtgacagttccctaacctgcatattgaatgcaaccatctg 35508998  T
Q  453 agctccatacatccacccaagatgt 477  Q
    |||||||||||||||||||||||||    
T  35508997 agctccatacatccacccaagatgt 35508973  T

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Target: chr5; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 4 - 134
Target Start/End: Complemental strand, 35509424 - 35509294
Alignment:
Q  4 ataataatttgaaaaagtagaagtaattgaatgggagtacaccatgtgttgatgttatacaccgacacgccttcaatctaaagtgtcactgccacattat 103  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  35509424 ataataatttgaaaaagtagaagtcattgaatgggagtacaccatgtgttgatgttatacaccgacgcgccttcaatctaaagtgtcactgccacattat 35509325  T
Q  104 tcaccaatctcttggtagcaaaaatttcatg 134  Q
    |||||||||||||||||||||||||||||||    
T  35509324 tcaccaatctcttggtagcaaaaatttcatg 35509294  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 39153981 - 39153939
Alignment:
Q  262 actttctaacaacattttcaatttttactctatatgtgggtgg 304  Q
    |||||||||||| |||||||||||||||| |||||||||||||    
T  39153981 actttctaacaatattttcaatttttactttatatgtgggtgg 39153939  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 421 - 470
Target Start/End: Complemental strand, 35522764 - 35522715
Alignment:
Q  421 tccctaacctgcatattgaatgcaaccatctgagctccatacatccaccc 470  Q
    ||||| |||||||| || ||||| ||||||||||||||||||||||||||    
T  35522764 tccctgacctgcatgttaaatgcgaccatctgagctccatacatccaccc 35522715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 426 - 472
Target Start/End: Complemental strand, 35552332 - 35552286
Alignment:
Q  426 aacctgcatattgaatgcaaccatctgagctccatacatccacccaa 472  Q
    ||||||||| |||||||||||||| ||||||||||  ||||||||||    
T  35552332 aacctgcatgttgaatgcaaccatttgagctccatgaatccacccaa 35552286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 424 - 470
Target Start/End: Complemental strand, 31653412 - 31653366
Alignment:
Q  424 ctaacctgcatattgaatgcaaccatctgagctccatacatccaccc 470  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  31653412 ctaacctgcatattgaatgcaaccatctgagctccatacatccaccc 31653366  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 426 - 470
Target Start/End: Complemental strand, 31703754 - 31703710
Alignment:
Q  426 aacctgcatattgaatgcaaccatctgagctccatacatccaccc 470  Q
    ||||||||||||| |||||||||||||||||||||||||||||||    
T  31703754 aacctgcatattgcatgcaaccatctgagctccatacatccaccc 31703710  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 427 - 472
Target Start/End: Complemental strand, 31710129 - 31710084
Alignment:
Q  427 acctgcatattgaatgcaaccatctgagctccatacatccacccaa 472  Q
    |||||||| || |||||||||||||||||||||| |||||||||||    
T  31710129 acctgcatgttaaatgcaaccatctgagctccatgcatccacccaa 31710084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 472
Target Start/End: Original strand, 31011207 - 31011252
Alignment:
Q  427 acctgcatattgaatgcaaccatctgagctccatacatccacccaa 472  Q
    |||||||| || |||||||||||||||||||||| |||||| ||||    
T  31011207 acctgcatgttaaatgcaaccatctgagctccatgcatccaaccaa 31011252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 290
Target Start/End: Complemental strand, 44800868 - 44800840
Alignment:
Q  262 actttctaacaacattttcaatttttact 290  Q
    |||||||||||||||||||||||||||||    
T  44800868 actttctaacaacattttcaatttttact 44800840  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 334 - 398
Target Start/End: Complemental strand, 48362800 - 48362736
Alignment:
Q  334 tttcctttttaattgtgatagagagaaaatgaaagctaatttgaaagaaagcatttccgaaaaca 398  Q
    |||||| |||||||||||||||||||| ||| ||||||| | || |||| ||||||| |||||||    
T  48362800 tttcctctttaattgtgatagagagaagatggaagctaactagagagaatgcatttctgaaaaca 48362736  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 262 - 304
Target Start/End: Complemental strand, 48362863 - 48362821
Alignment:
Q  262 actttctaacaacattttcaatttttactctatatgtgggtgg 304  Q
    ||||||||||||||||||||||||| ||| |||| ||||||||    
T  48362863 actttctaacaacattttcaattttcactttataggtgggtgg 48362821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 331 - 403
Target Start/End: Complemental strand, 20081528 - 20081456
Alignment:
Q  331 aattttcctttttaattgtgatagagagaaaatgaaagctaatttgaaagaaagcatttccgaaaacatcgaa 403  Q
    |||||| |||| ||||||||||||| |||| ||  ||||||| | || |||| ||||||||||||||| ||||    
T  20081528 aatttttctttctaattgtgatagacagaatatagaagctaactagagagaatgcatttccgaaaacaacgaa 20081456  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 262 - 290
Target Start/End: Original strand, 44643234 - 44643262
Alignment:
Q  262 actttctaacaacattttcaatttttact 290  Q
    |||||||||||||||||||||||||||||    
T  44643234 actttctaacaacattttcaatttttact 44643262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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