View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_low_13 (Length: 396)
Name: NF9604_low_13
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 386
Target Start/End: Complemental strand, 52246253 - 52245884
Alignment:
| Q |
20 |
ttattcattgttttatgctatccattagttaatttttcaagattatttttgctttaattgtaatcagacattgcagaaaacccaacaaggctgtcaccgt |
119 |
Q |
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| T |
52246253 |
ttattcattgttttatgctatccattagttaatttttcaagattatttttgctttaattgtaatcagacattgcagaaaaccaaacaaggctgtcaccgt |
52246154 |
T |
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| Q |
120 |
cttcaaacgct---acttctactagctgttgttcttctttcagcagtctcatgtcaagcttgcctcactcagatatccccacatctttctctatcacaga |
216 |
Q |
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| T |
52246153 |
cttcaaacgcttctacttctactagcttttgttcttctttcagcagtctcatgtcaagcttgcctcactcagatatccccacatctttctctatcacaga |
52246054 |
T |
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| Q |
217 |
acccacaaccctctcacttttcacaccactctatctctccaataacagcaacaatgatcacccttttccccattacaatactgcatctccacaacctgta |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52246053 |
acccacaaccctctcacttttcacaccactctatctctccaataacaacaacaatgatcacccttttccccattacaatactgcatctccacaacctgta |
52245954 |
T |
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| Q |
317 |
ttatctgctacagcattactccaaaaagctgctcaagtgggttcatcttcatccaatgcatctctgcttc |
386 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52245953 |
ttatctgctactgcattactccaaaaagctgctcaagtgggttcatcttcatccaatgcatctttgcttc |
52245884 |
T |
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