View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_low_15 (Length: 389)
Name: NF9604_low_15
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 3827475 - 3827112
Alignment:
| Q |
16 |
tcattgaccttataactagcattaacaatatcaactccttcttcatgaagaactcgaagggtttcactgaacaaaaactgagactccaatccagttatta |
115 |
Q |
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| T |
3827475 |
tcattgaccttataactagcattaacaatatcaactccttcttcatgaagaactcgaaaggtttcgctgaacaaaaactgagactccaatccagttatta |
3827376 |
T |
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| Q |
116 |
gaacaacctctaagactaaaccaatttgttgtatcttaatttttggagactttaatcccatcttctggtttctattcaaattcacattttgcctttgaat |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
3827375 |
gaacaacctctaagactaaaccaatttgttgtatcttaatttttggagactttaatcccatcttctggtttctattcaaattcacatttggcctttgaat |
3827276 |
T |
|
| Q |
216 |
tcctagtagaaaattcttcttttccttcattttctccaggttgatctgcaatttctttatgtagtttgttccttcctttagctgatccggcgctgaaatc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
3827275 |
tcctagtagaaaattcttcttttccttcattttctccaggttgatctgcaatttctttatgtagtttgttgcttcctttagctgatccggcactgaaatc |
3827176 |
T |
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| Q |
316 |
gcctcctgcatcagataaattaaatcagtgacaaaatactaacattatgtcttgtcggtctctg |
379 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3827175 |
gcctcctgcatcagataaattaaatcagtgacaaaatactaacattatgtcttgtcggtctctg |
3827112 |
T |
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