View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_low_16 (Length: 384)
Name: NF9604_low_16
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_16 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 20 - 384
Target Start/End: Complemental strand, 27508607 - 27508242
Alignment:
| Q |
20 |
cacgttatgttgaagaagatatccctcaagatttgatagagttatggagaaatcctcaagaaattgatgcttcactgcatcttccatccaagaatgagtt |
119 |
Q |
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| T |
27508607 |
cacgttatgttgaagaagatatccctcaagatttgatagagttatggagaaatcctcaagaaattgatgcctcactgcatcttccatccaagaatgagtt |
27508508 |
T |
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| Q |
120 |
tattccaagcgacttttctatacgagctggtggcgcatgtgatggtgattttgaaa-ttcgacttcccctagatgtatatttgatgaagctttgataaaa |
218 |
Q |
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| T |
27508507 |
tattccaagcgacttttctatacgagctggtggcgcatgtgatggtgattttgaaaattcgacttcccctagatgtatagttgatgaagctttgataaaa |
27508408 |
T |
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| Q |
219 |
ttttggtataagctagatagtactttcagagttcctcgagccaatacatattttcgaatcaacttgaagggtggatatgataatgcaaagagttgtgtat |
318 |
Q |
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| T |
27508407 |
ttttggtataagctagatagtactttcagagttcctcgagccaatacatattttcgaatcaacttgaagggtggatatgataatgcaaagagttgtgtat |
27508308 |
T |
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| Q |
319 |
tgtctgaattgttcattcaccttcttaaagacgagttgaatgaaatcatataccaggttaatcatc |
384 |
Q |
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| T |
27508307 |
tgtctgaattgttcattcaccttcttaaagacgagttgaatgaaatcatataccaggttaatcatc |
27508242 |
T |
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