View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_low_18 (Length: 371)
Name: NF9604_low_18
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_18 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 361
Target Start/End: Original strand, 10012576 - 10012920
Alignment:
| Q |
17 |
aatatgtggtagagaactttattcattggagaagggaagagtcacataattggctaaatgccttcatgaataccatcaaagaatcaaattaggacgggtg |
116 |
Q |
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| T |
10012576 |
aatatgtggtagagaactttattcattggagaagggaagagtcacataattggctaaatgccttcatgaataccatcaaagaatcaaattaggacgggtg |
10012675 |
T |
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| Q |
117 |
gcttttacgcaatccaactttgagcatattttctatcgcggtagatttgtcaaaatcatggtggcagcgttattttgttgaagtctaaagtgtagctttt |
216 |
Q |
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| T |
10012676 |
gcttttatgcaatccaacttggagcatattttctatcgcggtagatttgtcaaaatcatggtggcagcgttattttgttgaagtccaaagtgtagctttt |
10012775 |
T |
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| Q |
217 |
gacaaaatcacggtggcacatcgtgattttgttaaactcaccgtccgttcaaattaaggagagggtgttggcgcggtggtgtgtccatgatacgaagcag |
316 |
Q |
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| T |
10012776 |
gacaaaatcacggtggcacatcgtgattttgttaaactcactgtcagttcaaattaaggagagggtgttggcgcggtggtgtggccatggtacgaagcag |
10012875 |
T |
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| Q |
317 |
tggacgagtagagtaagacatcttgaagtgatagctacgtctgtg |
361 |
Q |
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| T |
10012876 |
tggacgagtagagtaagacatcttgaagtgatagctacgtctgtg |
10012920 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 203 - 246
Target Start/End: Complemental strand, 10341311 - 10341268
Alignment:
| Q |
203 |
aaagtgtagcttttgacaaaatcacggtggcacatcgtgatttt |
246 |
Q |
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| T |
10341311 |
aaagtgtagcttttgtcaaaatcacggtggcacatcgtgatttt |
10341268 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 188 - 247
Target Start/End: Original strand, 6011216 - 6011275
Alignment:
| Q |
188 |
attttgttgaagtctaaagtgtagcttttgacaaaatcacggtggcacatcgtgattttg |
247 |
Q |
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| T |
6011216 |
attttgttgaagcttaaactgtagcttttgacaaaatcagggtgggacaccatgattttg |
6011275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 161 - 244
Target Start/End: Complemental strand, 25719802 - 25719720
Alignment:
| Q |
161 |
atttgtcaaaatcatggtggcagcgttattttgttgaag-tctaaagtgtagcttttgacaaaatcacggtggcacatcgtgatt |
244 |
Q |
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| T |
25719802 |
atttgccaaaatcatgatggtaccgtgattttgttgaagctctaaagtgtagctttt--caaaatcacggtagctcattgtgatt |
25719720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 44279082 - 44279118
Alignment:
| Q |
208 |
gtagcttttgacaaaatcacggtggcacatcgtgatt |
244 |
Q |
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| T |
44279082 |
gtagcttttgtcaaaatcacggtggcacaccgtgatt |
44279118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 226
Target Start/End: Original strand, 35027503 - 35027568
Alignment:
| Q |
162 |
tttgtcaaaatcatggtggcagcgttattttgttgaag-tctaaagtgtagcttttgacaaaatca |
226 |
Q |
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| T |
35027503 |
tttgtcaaaatcaaggtggtaccgtaattttgttgaagctctgaagtgtagcttttatcaaaatca |
35027568 |
T |
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