View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_low_19 (Length: 371)
Name: NF9604_low_19
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 38865813 - 38865454
Alignment:
| Q |
1 |
ctgcagtattctcggcttatatggcctggtgagcctagcacactgaaccatcacnnnnnnnnnnnnnngctttgtccctctctc--tctcacatcatatt |
98 |
Q |
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| T |
38865813 |
ctgcagtattcttggcttatatggcctggtgagcctagcacactgaaccatcacttttttgtttttttgctttgtccctctctctctctctcatcatatt |
38865714 |
T |
|
| Q |
99 |
tgaggcaaaataaaattttgctttgtgactttagtgtgctgagaggtctgttatctatatatatgttccaagtaattttgtattgcatctc-ttaagttt |
197 |
Q |
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| T |
38865713 |
tgaggcaaaataaaattttgctttgtgactttagtgtgctgagaggtctgttatctatatatatgttccaagtaattttgtattgcatctctttaagttt |
38865614 |
T |
|
| Q |
198 |
tacagtttaaaattaggttttctattcaccatttgctggtggcttactgttatctaaatatacatgcctattttcttgtcagaatggtcaaaaagtctaa |
297 |
Q |
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| T |
38865613 |
tatagtttaaaattcggtttgctattcaccatttgctggtggcttactgttatctaaatatacatgcctattttcttgtcagaatgatc-aaaagtctaa |
38865515 |
T |
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| Q |
298 |
ccaaattcaattatacatataagnnnnnnnnatcaaatttatagagttaacaatgcacatg |
358 |
Q |
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| T |
38865514 |
ccaaattcaattatacatataagttttttttatcaaatttatagagttaacaatgcacatg |
38865454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 141 - 356
Target Start/End: Original strand, 38807745 - 38807967
Alignment:
| Q |
141 |
gaggtctgttatctatatatatgttccaagtaattttgtattgcatctcttaagttttacagttta--------aaattaggttttct-attcaccattt |
231 |
Q |
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| T |
38807745 |
gaggtctgttatcgacatatatgttccaagtaattatttattgcatctcttaagttttaaattttacttttcaaaaattaggttgccttattcaccattt |
38807844 |
T |
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| Q |
232 |
-gctggtggcttactgttatctaaatatacatgcctattttcttgtcagaatggtcaaaaagtctaaccaaattcaattatacatataagnnnnnnnnat |
330 |
Q |
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|| ||||||| ||||||| ||||||||||||||||||||||||||||||||| || |||||| |||||||||| || |||| ||||||| || |
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| T |
38807845 |
tgcaggtggctgactgttaactaaatatacatgcctattttcttgtcagaatgatc-aaaagtgtaaccaaattgaaatataaatataagttttttttat |
38807943 |
T |
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| Q |
331 |
caaatttatagagttaacaatgcaca |
356 |
Q |
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|||||| |||||||||||||||||| |
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| T |
38807944 |
caaatt--tagagttaacaatgcaca |
38807967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 39310559 - 39310508
Alignment:
| Q |
1 |
ctgcagtattctcggcttatatggcctggtgagcctagcacactgaaccatca |
53 |
Q |
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| T |
39310559 |
ctgcagtattctcagcccatatggcctggtgagcctagc-cattgaaccatca |
39310508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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