View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_low_20 (Length: 370)
Name: NF9604_low_20
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_20 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 19 - 363
Target Start/End: Original strand, 13051812 - 13052156
Alignment:
| Q |
19 |
taattcccattaacaactcctcaatcatattactcttctcccctacacccccctcttcaatatacaccgaatacgtannnnnnnccttaggcaaatacca |
118 |
Q |
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| T |
13051812 |
taattcccattaacacctcctcaatcatattactcttctcacctacacccccctcttcaatatacaccgaatacatatttttatacttaggcaaatacca |
13051911 |
T |
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| Q |
119 |
atggtattgcgtatacgccgtatgtggagagaaaaatacaggtatacaaccagcaagtatagagtcaaaagttgaccttctagtaaaagaatcacctggt |
218 |
Q |
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| T |
13051912 |
atggtattgcgaatacgccgtatgtggagagaaaaatacaggtatacaaccagcaagtatagagtcaaaagttgaccttctagtaaaagaatcacctggt |
13052011 |
T |
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| Q |
219 |
gcttgaagacaaaaacgtgactccatcataacactaagtacttccattggttgatgacatttactattcccacctccacaatcaaccaacttgcaaagag |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13052012 |
gcttgaagacaaaaacgtgactccatcataacactaagtacttccattggttgatgacatttactattcccacctccacaatcaaccaacttgcaaagag |
13052111 |
T |
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| Q |
319 |
atgactcattacattgtttaaacaattcatcacgaatctctgctt |
363 |
Q |
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| T |
13052112 |
atgactcattacattgtttaaacaactcatcacgaatctttgctt |
13052156 |
T |
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