View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9604_low_21 (Length: 362)

Name: NF9604_low_21
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9604_low_21
NF9604_low_21
[»] chr1 (13 HSPs)
chr1 (16-142)||(2094366-2094488)
chr1 (246-353)||(2094211-2094321)
chr1 (67-146)||(11821159-11821238)
chr1 (65-141)||(3792557-3792633)
chr1 (66-141)||(39650194-39650269)
chr1 (68-148)||(37260911-37260991)
chr1 (69-149)||(42883751-42883831)
chr1 (66-123)||(5602942-5602999)
chr1 (65-142)||(35392108-35392185)
chr1 (80-142)||(35391487-35391549)
chr1 (68-141)||(33617644-33617717)
chr1 (68-121)||(49033755-49033808)
chr1 (68-124)||(3792296-3792352)
[»] chr5 (15 HSPs)
chr5 (67-238)||(17644507-17644679)
chr5 (164-245)||(7164274-7164355)
chr5 (68-147)||(11135741-11135820)
chr5 (68-129)||(6636919-6636980)
chr5 (136-245)||(1145776-1145886)
chr5 (66-124)||(3458012-3458070)
chr5 (66-123)||(25787864-25787921)
chr5 (66-130)||(34017635-34017699)
chr5 (72-143)||(30491798-30491869)
chr5 (65-147)||(6158942-6159023)
chr5 (68-150)||(25760509-25760591)
chr5 (98-147)||(3759583-3759632)
chr5 (62-143)||(6702364-6702445)
chr5 (164-213)||(40266539-40266588)
chr5 (67-143)||(36580222-36580298)
[»] chr3 (15 HSPs)
chr3 (265-338)||(53782276-53782349)
chr3 (68-245)||(54528855-54529034)
chr3 (67-141)||(6162687-6162761)
chr3 (68-141)||(44833470-44833543)
chr3 (65-146)||(47064861-47064942)
chr3 (55-142)||(30533882-30533969)
chr3 (68-130)||(4969875-4969937)
chr3 (67-141)||(53827666-53827740)
chr3 (67-147)||(11342889-11342969)
chr3 (68-140)||(53814567-53814639)
chr3 (67-142)||(3539667-3539742)
chr3 (68-141)||(15040681-15040754)
chr3 (68-113)||(44430418-44430463)
chr3 (68-141)||(44836483-44836556)
chr3 (69-113)||(13843626-13843670)
[»] chr2 (8 HSPs)
chr2 (64-146)||(37893008-37893090)
chr2 (68-130)||(22788001-22788063)
chr2 (66-141)||(18387239-18387314)
chr2 (66-119)||(5037297-5037350)
chr2 (68-141)||(8273245-8273318)
chr2 (68-129)||(19984720-19984781)
chr2 (68-141)||(12967270-12967344)
chr2 (68-124)||(20685006-20685062)
[»] chr6 (11 HSPs)
chr6 (64-141)||(35060900-35060977)
chr6 (68-141)||(14153354-14153427)
chr6 (64-143)||(31522538-31522617)
chr6 (164-225)||(807122-807183)
chr6 (68-142)||(23608427-23608501)
chr6 (68-148)||(14430944-14431024)
chr6 (68-149)||(14431471-14431552)
chr6 (68-141)||(17436546-17436619)
chr6 (64-141)||(32275776-32275853)
chr6 (215-266)||(806687-806739)
chr6 (62-142)||(23608983-23609063)
[»] chr8 (10 HSPs)
chr8 (67-127)||(37687331-37687391)
chr8 (67-143)||(43640976-43641052)
chr8 (68-146)||(23558983-23559061)
chr8 (68-140)||(35841397-35841469)
chr8 (67-141)||(33220792-33220866)
chr8 (65-141)||(31762238-31762314)
chr8 (67-113)||(9418586-9418632)
chr8 (68-141)||(5967242-5967315)
chr8 (69-130)||(9384617-9384678)
chr8 (67-124)||(33220023-33220079)
[»] chr4 (12 HSPs)
chr4 (68-147)||(27992303-27992382)
chr4 (66-141)||(33164510-33164585)
chr4 (68-146)||(38677662-38677740)
chr4 (68-146)||(36217870-36217948)
chr4 (68-141)||(36172165-36172238)
chr4 (68-119)||(37576543-37576594)
chr4 (68-146)||(38676939-38677017)
chr4 (71-141)||(24974151-24974221)
chr4 (68-146)||(54208180-54208258)
chr4 (71-124)||(40312816-40312869)
chr4 (71-124)||(40322892-40322945)
chr4 (68-129)||(54209066-54209127)
[»] chr7 (9 HSPs)
chr7 (63-142)||(26009364-26009443)
chr7 (68-141)||(38790884-38790958)
chr7 (164-213)||(149051-149100)
chr7 (68-123)||(42548161-42548216)
chr7 (68-146)||(26011953-26012031)
chr7 (68-129)||(28138759-28138820)
chr7 (71-141)||(5177-5247)
chr7 (63-141)||(1537251-1537329)
chr7 (65-146)||(30359702-30359781)
[»] scaffold1063 (1 HSPs)
scaffold1063 (66-141)||(1473-1548)
[»] scaffold0262 (1 HSPs)
scaffold0262 (68-147)||(8384-8463)
[»] scaffold1763 (1 HSPs)
scaffold1763 (68-146)||(364-442)


Alignment Details
Target: chr1 (Bit Score: 86; Significance: 5e-41; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 16 - 142
Target Start/End: Complemental strand, 2094488 - 2094366
Alignment:
Q  16 tatttaacaagttcttaactttttcactctcatatataacgtacaattttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatg 115  Q
    ||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||||    
T  2094488 tatttaacaagttcttaactttttcactctcata----acgtacaattttttgaattctgctcattacccaaattgttctgctcatttccaaagtaaatg 2094393  T
Q  116 tccaaaatatccctatgcatgttaact 142  Q
    || |||||||||||| |||| ||||||    
T  2094392 tctaaaatatccctacgcatattaact 2094366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 246 - 353
Target Start/End: Complemental strand, 2094321 - 2094211
Alignment:
Q  246 ttaacttacgctggttttgtttctcttaaaggccagcagcctggtccaatccaagtggggtgtggtc--aaatatacattactacacaagcaacaacaa- 342  Q
    |||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| ||  ||||||||||||||| ||||||||||||||     
T  2094321 ttaactcacgctggttttgtttctcataaaagccagcagcctggtccaatccaagtggggtgtgatcaaaaatatacattactatacaagcaacaacaac 2094222  T
Q  343 ccaagaataat 353  Q
    |||||||||||    
T  2094221 ccaagaataat 2094211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 146
Target Start/End: Original strand, 11821159 - 11821238
Alignment:
Q  67 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 146  Q
    |||||||||||||||| ||||||||||  ||||||| |||||||||| |||||||||   ||||||||||||||||||||    
T  11821159 tgaattctgctcattatccaaatggtttcgttcattcccaaagtaaaagtccaaaatgctcctatgcatgttaacttacg 11821238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 3792557 - 3792633
Alignment:
Q  65 tttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||||||||||||||||||| |||  | |||||||||||||||| |||||||||  || || ||||||||||    
T  3792557 tttgaattctgctcattacccaaatagtttcgctcatttccaaagtaaaagtccaaaatgcccttacgcatgttaac 3792633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 39650194 - 39650269
Alignment:
Q  66 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||||||||||||| ||||||||  | ||||| | ||||||||||||||||||  ||||| ||||||||||    
T  39650194 ttgaattctgctcattacctaaatggtttcgctcattcctaaagtaaatgtccaaaatgcccctacgcatgttaac 39650269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 148
Target Start/End: Complemental strand, 37260991 - 37260911
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgca 148  Q
    ||||| ||||| ||||||||| |||| ||  ||||  |||||||||||||||||||  ||||||||||||||||| |||||    
T  37260991 gaattatgctctttacccaaacggttttgcccattctcaaagtaaatgtccaaaatgcccctatgcatgttaactcacgca 37260911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 42883831 - 42883751
Alignment:
Q  69 aattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaa 149  Q
    |||| ||||| ||| | |||||||| || ||||||| ||| |||||||||||||||||||||  |||||||||| ||||||    
T  42883831 aattatgctctttagctaaatggttttgctcatttctaaaataaatgtccaaaatatccctacacatgttaactcacgcaa 42883751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 5602942 - 5602999
Alignment:
Q  66 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaat 123  Q
    ||||||||||||| |||||||||||| | || ||||| |||||||||||| |||||||    
T  5602942 ttgaattctgctctttacccaaatggatttgctcattcccaaagtaaatgaccaaaat 5602999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 65 - 142
Target Start/End: Complemental strand, 35392185 - 35392108
Alignment:
Q  65 tttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 142  Q
    |||||| ||||||| |||||||||| ||| || ||||| ||||||||||||| |||||||   ||| |||||||||||    
T  35392185 tttgaactctgctctttacccaaattgttttgctcattcccaaagtaaatgttcaaaatacttctacgcatgttaact 35392108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 80 - 142
Target Start/End: Original strand, 35391487 - 35391549
Alignment:
Q  80 ttacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 142  Q
    ||||| ||||||||  ||||||| |||||||||||||||||||||  | || |||||||||||    
T  35391487 ttacctaaatggtttcgttcattcccaaagtaaatgtccaaaatactcatacgcatgttaact 35391549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 33617644 - 33617717
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||| |||||||||||||||||| |  | |||||  ||||||||||| || ||||  ||||||||||||||||    
T  33617644 gaattatgctcattacccaaatggattcgctcattctcaaagtaaatgaccgaaatgcccctatgcatgttaac 33617717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 121
Target Start/End: Complemental strand, 49033808 - 49033755
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaa 121  Q
    |||||||||||||||  |||||||||  | ||||| ||||||||||||||||||    
T  49033808 gaattctgctcattattcaaatggttccgctcattcccaaagtaaatgtccaaa 49033755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 3792296 - 3792352
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 124  Q
    ||||||||||||||||||||||| || |  |||||  |||| |||||||||||||||    
T  3792296 gaattctgctcattacccaaatgattctactcattctcaaaataaatgtccaaaata 3792352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 67 - 238
Target Start/End: Complemental strand, 17644679 - 17644507
Alignment:
Q  67 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaacataag-tatgtcatgc 165  Q
    |||||| ||||||||||| |||||| |  | ||||| ||||||||||||||||||||| ||||| ||||||||| | |||||| | ||| ||  ||| ||    
T  17644679 tgaattgtgctcattaccgaaatggattcgctcattcccaaagtaaatgtccaaaatacccctacgcatgttaattcacgcaataaaagttaactcacgc 17644580  T
Q  166 tagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacacaaaagaaaaacacactaaaaccc 238  Q
    ||||||||||||| | |||||||| ||||||||| |||||||| |||| || || ||  ||||||||||||||    
T  17644579 tagtgttaaatttacatgagttaactcacgctgcgtgacttaaatcacgcagaaaaatcacacactaaaaccc 17644507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 7164274 - 7164355
Alignment:
Q  164 gctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacacaaaagaaaaacacactaaaacccagcgtga 245  Q
    |||| |||||||||| | ||||||||||||||| || ||||||||||||| || || ||| ||||||||||||||| |||||    
T  7164274 gctaatgttaaatttgcatgagttaattcacgccgcgtgacttaagtcacgcagaaaaaacacacactaaaacccaacgtga 7164355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 11135741 - 11135820
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 147  Q
    ||||| ||||| ||||||||||| ||  | ||||||||||| |||||| |||||||| ||||| ||||||||||||||||    
T  11135741 gaattatgctctttacccaaatgatttcgctcatttccaaaataaatgaccaaaatacccctacgcatgttaacttacgc 11135820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 6636980 - 6636919
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccct 129  Q
    ||||||||||||||| |||||||  |||||||||| ||||| |||||| |||||||||||||    
T  6636980 gaattctgctcattatccaaatgaatatgttcattcccaaaataaatgaccaaaatatccct 6636919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 136 - 245
Target Start/End: Complemental strand, 1145886 - 1145776
Alignment:
Q  136 gttaacttacgcaacataagt-atgtcatgctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacacaaaagaaaaacacactaaa 234  Q
    |||||||||||| |||| ||| |  ||| |||| ||| |||||| | |||||||| ||||||||| || |||||||||| || || ||| |||||| |||    
T  1145886 gttaacttacgctacattagttaactcacgctaatgtaaaatttgcatgagttaactcacgctgcgtgtcttaagtcacgcagaaaaaatacacaccaaa 1145787  T
Q  235 acccagcgtga 245  Q
    |||||||||||    
T  1145786 acccagcgtga 1145776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 124
Target Start/End: Original strand, 3458012 - 3458070
Alignment:
Q  66 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 124  Q
    ||||||||||||||||||| |||  ||  || |||||||||||||||||||||||||||    
T  3458012 ttgaattctgctcattaccgaaaccgtattgctcatttccaaagtaaatgtccaaaata 3458070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 123
Target Start/End: Complemental strand, 25787921 - 25787864
Alignment:
Q  66 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaat 123  Q
    ||||||||||||| ||| ||||| ||||||| ||||||||||| |||||| |||||||    
T  25787921 ttgaattctgctctttatccaaacggttatgctcatttccaaaataaatgaccaaaat 25787864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 34017699 - 34017635
Alignment:
Q  66 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcccta 130  Q
    |||||||||||||||||| |||||||||  | |||||| ||||||||||| || ||||| |||||    
T  34017699 ttgaattctgctcattactcaaatggttccgctcattttcaaagtaaatgaccgaaataccccta 34017635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 72 - 143
Target Start/End: Complemental strand, 30491869 - 30491798
Alignment:
Q  72 tctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 143  Q
    |||||||||||||||||||  |  | ||||| |||||||||| ||| ||||| |||||| ||||||||||||    
T  30491869 tctgctcattacccaaatgaattcgctcattcccaaagtaaaagtcgaaaatgtccctacgcatgttaactt 30491798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 147
Target Start/End: Complemental strand, 6159023 - 6158942
Alignment:
Q  65 tttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 147  Q
    |||||||||||||||||||  |||||| |  | ||||| |||||||||||||| |||||| ||||| | ||||||||| ||||    
T  6159023 tttgaattctgctcattacttaaatggattcgctcattcccaaagtaaatgtctaaaata-ccctacgtatgttaactcacgc 6158942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 25760591 - 25760509
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaac 150  Q
    ||||||||||| ||||||||| ||||||| || || | ||||||||||  |||||||||||| ||   ||||||| |||||||    
T  25760591 gaattctgctctttacccaaacggttatgctcgttccaaaagtaaatgatcaaaatatccctgtgtgagttaactcacgcaac 25760509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 147
Target Start/End: Complemental strand, 3759632 - 3759583
Alignment:
Q  98 tcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 147  Q
    ||||||||||| |||||| |||||||| |||||| |||||||||| ||||    
T  3759632 tcatttccaaaataaatgaccaaaataaccctattcatgttaactcacgc 3759583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 6702364 - 6702445
Alignment:
Q  62 ttttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 143  Q
    |||||||||||||||||||| ||||||| |||  | |||||  ||||||||| ||| |||||  || || ||||||||||||    
T  6702364 ttttttgaattctgctcattgcccaaatagtttcgctcattctcaaagtaaaagtcaaaaatgcccatacgcatgttaactt 6702445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 213
Target Start/End: Complemental strand, 40266588 - 40266539
Alignment:
Q  164 gctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcac 213  Q
    |||| |||||||||| |||||||||| ||||||| | |||||||||||||    
T  40266588 gctaatgttaaatttgcgtgagttaactcacgctacgtgacttaagtcac 40266539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 36580222 - 36580298
Alignment:
Q  67 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 143  Q
    |||||||||||||||||  ||||||||  | | ||||| ||| |||| || |||||||||||||  |||||||||||    
T  36580222 tgaattctgctcattacttaaatggttccgcttatttctaaaataaaagttcaaaatatccctacacatgttaactt 36580298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 265 - 338
Target Start/End: Complemental strand, 53782349 - 53782276
Alignment:
Q  265 tttctcttaaaggccagcagcctggtccaatccaagtggggtgtggtcaaatatacattactacacaagcaaca 338  Q
    ||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||    
T  53782349 tttctcttaaaaggcagcagcctggtccaatccaagtggggtgtggtcaaagatacattactatacaagcaaca 53782276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 68 - 245
Target Start/End: Complemental strand, 54529034 - 54528855
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaacataag-tatgtcatgct 166  Q
    ||||||||||| ||||| ||||| || || |||||  ||| |||||||||||||||| |||||  |||||||||| ||||||| | || ||  |||  ||    
T  54529034 gaattctgctctttaccaaaatgattttgctcattctcaatgtaaatgtccaaaatacccctacacatgttaactcacgcaacctgagttaattcacact 54528935  T
Q  167 agtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacac-aaaagaaaaacacactaaaacccagcgtga 245  Q
    | ||||||||||  | ||||||| ||||| | ||||||||||||| ||| |||| ||||||| |||||||||||||||||    
T  54528934 aatgttaaatttgtgggagttaactcacgtttcatgacttaagtcgcacaaaaaaaaaaacaaactaaaacccagcgtga 54528855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 6162761 - 6162687
Alignment:
Q  67 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    |||||||||||||||||||||||||||  | ||||| |||||||||| |||||||||  ||||| ||||||||||    
T  6162761 tgaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtccaaaatgcccctacgcatgttaac 6162687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 44833470 - 44833543
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||||||||||||||||||||  ||| |||||||||||||| |||||||||  ||||| |||| |||||    
T  44833470 gaattctgctcattacccaaatggttccgtttatttccaaagtaaaagtccaaaatgcccctacgcatattaac 44833543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 47064861 - 47064942
Alignment:
Q  65 tttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 146  Q
    |||||||| ||||||||||||||||| || || ||||| |||||||||| |||||||||   |||| |||||||||||||||    
T  47064861 tttgaattatgctcattacccaaatgattctgctcattcccaaagtaaaagtccaaaatgctcctacgcatgttaacttacg 47064942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 30533969 - 30533882
Alignment:
Q  55 cgtacaattttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 142  Q
    |||| |||| |||||||||||||| |||| | || |||| || |||||| |||||||||| ||||||||| |||||  ||||||||||    
T  30533969 cgtaaaattctttgaattctgctctttactcgaacggttttgctcattttcaaagtaaatatccaaaatacccctacacatgttaact 30533882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 130
Target Start/End: Original strand, 4969875 - 4969937
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcccta 130  Q
    ||||||||||||||||||||||||||  | ||||| |||||||||| ||| |||||| |||||    
T  4969875 gaattctgctcattacccaaatggttccgctcattcccaaagtaaaagtcgaaaataccccta 4969937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 53827740 - 53827666
Alignment:
Q  67 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    |||||||||||||||||| |||| ||   | ||||| ||||||||||||||||||||  ||||| ||||||||||    
T  53827740 tgaattctgctcattacctaaatagtatcgctcattcccaaagtaaatgtccaaaatgcccctacgcatgttaac 53827666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 67 - 147
Target Start/End: Original strand, 11342889 - 11342969
Alignment:
Q  67 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 147  Q
    |||||||||||||||   |||||||||  ||||||| |||||||||| ||||||||   ||||| ||||||||| ||||||    
T  11342889 tgaattctgctcattgttcaaatggttccgttcattcccaaagtaaaagtccaaaaagcccctacgcatgttaatttacgc 11342969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 140
Target Start/End: Complemental strand, 53814639 - 53814567
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaa 140  Q
    |||||||||||||||||||||||| |  | ||||| ||||||||||||  ||||||  ||||| |||||||||    
T  53814639 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcaaaatgcccctacgcatgttaa 53814567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 67 - 142
Target Start/End: Original strand, 3539667 - 3539742
Alignment:
Q  67 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 142  Q
    |||||| ||||| ||| |||||||||| || ||||||||||| ||||||  ||||||| |||||  ||||||||||    
T  3539667 tgaattatgctctttatccaaatggttttgctcatttccaaaataaatgatcaaaatagccctacacatgttaact 3539742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 15040681 - 15040754
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    |||||||||||||||||||||||| |  | ||||| |||||||||||| |  ||||  ||||| ||||||||||    
T  15040681 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgactgaaatgcccctacgcatgttaac 15040754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 113
Target Start/End: Original strand, 44430418 - 44430463
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaa 113  Q
    ||||||||||||||| |||||||||| || ||||| ||||||||||    
T  44430418 gaattctgctcattatccaaatggttttgctcattcccaaagtaaa 44430463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 44836556 - 44836483
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||||||||| | ||||||||  | ||||||| |||||||||||||| | |  ||||| ||||||||||    
T  44836556 gaattctgctcattatctaaatggttccgctcatttctaaagtaaatgtccatattgcccctacgcatgttaac 44836483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 113
Target Start/End: Complemental strand, 13843670 - 13843626
Alignment:
Q  69 aattctgctcattacccaaatggttatgttcatttccaaagtaaa 113  Q
    |||||||||||||||||||||||||  | ||||| ||||||||||    
T  13843670 aattctgctcattacccaaatggtttcgctcattcccaaagtaaa 13843626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 146
Target Start/End: Complemental strand, 37893090 - 37893008
Alignment:
Q  64 ttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 146  Q
    |||||||||||||| |||||||||||||||  | ||||| |||||||||| |||||||||  |||||||||||||||||||||    
T  37893090 ttttgaattctgctaattacccaaatggtttcgctcattcccaaagtaaaagtccaaaatgcccctatgcatgttaacttacg 37893008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 130
Target Start/End: Complemental strand, 22788063 - 22788001
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcccta 130  Q
    ||||||||||| |||||||||||| | |||||||| |||||||||||| |||||||| |||||    
T  22788063 gaattctgctctttacccaaatggatttgttcattcccaaagtaaatgaccaaaataccccta 22788001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 18387239 - 18387314
Alignment:
Q  66 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    |||||||||||||||||| ||||||||| || ||||| ||||||||||| || |||||  || || ||||||||||    
T  18387239 ttgaattctgctcattactcaaatggttctgctcattcccaaagtaaatatcaaaaatgcccttacgcatgttaac 18387314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 119
Target Start/End: Original strand, 5037297 - 5037350
Alignment:
Q  66 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtcca 119  Q
    ||||||||||||| ||||| ||| |||| ||||| |||||||||||||||||||    
T  5037297 ttgaattctgctctttaccaaaacggttttgttcgtttccaaagtaaatgtcca 5037350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 8273245 - 8273318
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    |||||||||||||||||||||||| |  | ||||| |||||||||||| || ||||  ||||| ||||||||||    
T  8273245 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaac 8273318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 19984781 - 19984720
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccct 129  Q
    ||||||||||| ||||||||| ||||||| || |||| |||||||||| |||||||| ||||    
T  19984781 gaattctgctctttacccaaacggttatgctcgtttctaaagtaaatgaccaaaatacccct 19984720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 12967270 - 12967344
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagt-aaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||||||||||| ||||||||  | |||||  |||||| ||| |||||||||| ||||| ||||||||||    
T  12967270 gaattctgctcattacctaaatggttccgctcattctcaaagtaaaaagtccaaaatacccctacgcatgttaac 12967344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 124
Target Start/End: Original strand, 20685006 - 20685062
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 124  Q
    ||||||||||||||||||||||||||  | |||||  ||||||||| ||| ||||||    
T  20685006 gaattctgctcattacccaaatggttccgctcattctcaaagtaaaagtctaaaata 20685062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 50; Significance: 1e-19; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 35060977 - 35060900
Alignment:
Q  64 ttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||||||||||||||||||||| ||  | ||||||||||||||||||||||||||  ||||| ||||||||||    
T  35060977 ttttgaattctgctcattacccaaatgattccgctcatttccaaagtaaatgtccaaaatgcccctacgcatgttaac 35060900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 14153354 - 14153427
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||||||||||||||||| || || ||||| |||||||||||| |||||||| ||||| ||||||||||    
T  14153354 gaattctgctcattacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccctacgcatgttaac 14153427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 31522617 - 31522538
Alignment:
Q  64 ttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 143  Q
    ||||||||||||||||||||||||||||||  | ||||| |||||||||||| || ||||  ||||| ||| ||||||||    
T  31522617 ttttgaattctgctcattacccaaatggttccgctcattcccaaagtaaatgaccgaaatgcccctacgcaagttaactt 31522538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 225
Target Start/End: Complemental strand, 807183 - 807122
Alignment:
Q  164 gctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcacacaaaagaaaaa 225  Q
    ||||||||||||||| |||||||||| |||| |||| ||||||||||||| ||||| |||||    
T  807183 gctagtgttaaatttgcgtgagttaactcacactgcgtgacttaagtcacgcaaaaaaaaaa 807122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 142
Target Start/End: Original strand, 23608427 - 23608501
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 142  Q
    |||||||||||||||  |||||| ||  ||||||| ||||| |||| ||| |||||||||||| |||||||||||    
T  23608427 gaattctgctcattattcaaatgattccgttcattcccaaaataaaagtctaaaatatccctacgcatgttaact 23608501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 148
Target Start/End: Original strand, 14430944 - 14431024
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgca 148  Q
    ||||||||||  ||||| ||| |||| || ||||||| |||||||||||  ||||| |||||| ||||||||||| |||||    
T  14430944 gaattctgctatttacctaaacggttctgctcatttctaaagtaaatgtttaaaatgtccctacgcatgttaactcacgca 14431024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 14431552 - 14431471
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgcaa 149  Q
    ||||||| ||| |||| |||| |||| |||||||| | ||||||||||| ||||| |||||||   ||||||||| ||||||    
T  14431552 gaattctactctttacacaaacggttttgttcattcctaaagtaaatgttcaaaacatccctacatatgttaactcacgcaa 14431471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 17436619 - 17436546
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    |||||||||||||||||||||||| |  | || || |||||||||||| || |||| ||||||  |||||||||    
T  17436619 gaattctgctcattacccaaatggattcgctcgttcccaaagtaaatgaccgaaatgtccctacacatgttaac 17436546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 32275853 - 32275776
Alignment:
Q  64 ttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||| ||||||||| ||||||||||  | ||||| |||||||||||| |  ||||  ||||||||| ||||||    
T  32275853 ttttgaattatgctcattatccaaatggttccgctcattcccaaagtaaatgactgaaatgcccctatgcaagttaac 32275776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 806687 - 806739
Alignment:
Q  215 caaaagaaaaacacactaaaacccagcgtga-ttaacttacgctggttttgtt 266  Q
    ||||| ||||||||||| ||||||| ||||| |||||| ||||||||||||||    
T  806687 caaaaaaaaaacacactgaaacccaacgtgagttaactcacgctggttttgtt 806739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 142
Target Start/End: Complemental strand, 23609063 - 23608983
Alignment:
Q  62 ttttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 142  Q
    |||||||||||||| ||||||| ||||||||| |  ||||| | ||| |||| || |||||||  ||| ||||||||||||    
T  23609063 ttttttgaattctggtcattactcaaatggttcttctcattcctaaaataaaagttcaaaatactcctctgcatgttaact 23608983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 67 - 127
Target Start/End: Complemental strand, 37687391 - 37687331
Alignment:
Q  67 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcc 127  Q
    ||||||||||| |||||||||||||||  | ||||||||||||||||||||||||||||||    
T  37687391 tgaattctgcttattacccaaatggttccgctcatttccaaagtaaatgtccaaaatatcc 37687331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 67 - 143
Target Start/End: Complemental strand, 43641052 - 43640976
Alignment:
Q  67 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaactt 143  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||  |||| |  ||||| ||||||||||||    
T  43641052 tgaattctgctcattacccaaatggtttggctcatttccaaagtaaatgatcaaattgcccctacgcatgttaactt 43640976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 23559061 - 23558983
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 146  Q
    ||||||||||||||| ||||||||||  | ||||| |||| ||||| |||||||||  ||||| |||||||||||||||    
T  23559061 gaattctgctcattatccaaatggttccgctcattgccaaggtaaaagtccaaaatgcccctacgcatgttaacttacg 23558983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 35841397 - 35841469
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaa 140  Q
    ||||||||||| ||||| |||  ||| || ||||||  ||||||||||||||||||||||||| |||||||||    
T  35841397 gaattctgctctttaccaaaacagttgtgctcatttttaaagtaaatgtccaaaatatccctacgcatgttaa 35841469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 141
Target Start/End: Complemental strand, 33220866 - 33220792
Alignment:
Q  67 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    |||||||||||||||||||||||||||    ||||| |||||||||| || ||||||  ||||| ||||||||||    
T  33220866 tgaattctgctcattacccaaatggtttcactcattcccaaagtaaaagttcaaaatgcccctacgcatgttaac 33220792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 141
Target Start/End: Original strand, 31762238 - 31762314
Alignment:
Q  65 tttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||||||||||||  ||||||| |  | ||||| |||||||||||   | ||||||||||||||||||||||    
T  31762238 tttgaattctgctcattattcaaatggattcgctcattcccaaagtaaataaacgaaatatccctatgcatgttaac 31762314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 113
Target Start/End: Original strand, 9418586 - 9418632
Alignment:
Q  67 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaa 113  Q
    |||||||||||||||||||||||||||  | ||||| ||||||||||    
T  9418586 tgaattctgctcattacccaaatggtttcgctcattcccaaagtaaa 9418632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Complemental strand, 5967315 - 5967242
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    |||||||||||||||||||||||| |  | ||||| ||||||||||||  | ||||  ||||| ||||||||||    
T  5967315 gaattctgctcattacccaaatggattcgctcattcccaaagtaaatgatcgaaatgcccctacgcatgttaac 5967242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 69 - 130
Target Start/End: Original strand, 9384617 - 9384678
Alignment:
Q  69 aattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatcccta 130  Q
    ||||||||||||||  |||||||||  | |||||| |||| |||||||||||||| ||||||    
T  9384617 aattctgctcattattcaaatggttccgctcattttcaaaataaatgtccaaaatgtcccta 9384678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 33220023 - 33220079
Alignment:
Q  67 tgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 124  Q
    |||||||||||||||| ||||||||||  | ||| ||||||||||||||| |||||||    
T  33220023 tgaattctgctcattatccaaatggttccgctca-ttccaaagtaaatgttcaaaata 33220079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 6e-16; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 27992382 - 27992303
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 147  Q
    ||||| || ||||||||||||||| | || ||||||| ||| ||||||||||||||| ||||||||||||||||| ||||    
T  27992382 gaattatgttcattacccaaatggatttgctcatttctaaaataaatgtccaaaatacccctatgcatgttaactcacgc 27992303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 141
Target Start/End: Complemental strand, 33164585 - 33164510
Alignment:
Q  66 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||||||||||||||||||||||  | |||||  |||||||||||||||||||  ||||| ||||||||||    
T  33164585 ttgaattctgctcattacccaaatggttccgctcattctcaaagtaaatgtccaaaatgcccctacgcatgttaac 33164510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 38677740 - 38677662
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 146  Q
    ||||||||||| ||||||||| | || |||||||| ||||||||||| | ||||||||||||  |||||||||||||||    
T  38677740 gaattctgctctttacccaaacgattttgttcattcccaaagtaaatattcaaaatatccctgcgcatgttaacttacg 38677662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 36217870 - 36217948
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 146  Q
    ||||||||||| |||| ||||||||| |  ||||| |||||||||| |||||||||  ||||| |||||||||||||||    
T  36217870 gaattctgctctttactcaaatggttttactcattcccaaagtaaaagtccaaaatgcccctacgcatgttaacttacg 36217948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 36172165 - 36172238
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    |||||||||||||||||||||| |||    ||||| |||||||||| |||||||||| ||||||| ||||||||    
T  36172165 gaattctgctcattacccaaatagttccactcattcccaaagtaaaagtccaaaatacccctatgtatgttaac 36172238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 37576543 - 37576594
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtcca 119  Q
    ||||||||||||||||||||| |||| || || |||||||||||||||||||    
T  37576543 gaattctgctcattacccaaacggttttgctcgtttccaaagtaaatgtcca 37576594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 38676939 - 38677017
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 146  Q
    ||||||| ||| ||| ||||| |||| || ||||| ||||| ||||||||||||||| | ||| |||||||||||||||    
T  38676939 gaattctcctctttatccaaacggttttgctcattcccaaaataaatgtccaaaatacctctacgcatgttaacttacg 38677017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 24974221 - 24974151
Alignment:
Q  71 ttctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    |||||||||||| |||||||| | || ||||| |||||||||||| || ||||  ||||| ||||||||||    
T  24974221 ttctgctcattatccaaatggatttgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaac 24974151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 146
Target Start/End: Original strand, 54208180 - 54208258
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 146  Q
    ||||| ||||| ||| |||||||||| || ||||| ||||||||||||  ||||||| |||||  || |||||||||||    
T  54208180 gaattatgctctttatccaaatggttttgctcattcccaaagtaaatgatcaaaatacccctactcaagttaacttacg 54208258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 40312869 - 40312816
Alignment:
Q  71 ttctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 124  Q
    |||||||||||||||||||| ||  | |||||||||||||||| ||| ||||||    
T  40312869 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaata 40312816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 124
Target Start/End: Complemental strand, 40322945 - 40322892
Alignment:
Q  71 ttctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaata 124  Q
    |||||||||||||||||||| ||  | |||||||||||||||| ||| ||||||    
T  40322945 ttctgctcattacccaaatgatttcgctcatttccaaagtaaaagtctaaaata 40322892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 54209127 - 54209066
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccct 129  Q
    ||||||||||| ||| | ||| ||||||||||||| ||||||||||||| || | |||||||    
T  54209127 gaattctgctctttatctaaacggttatgttcattcccaaagtaaatgttcatattatccct 54209066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 142
Target Start/End: Original strand, 26009364 - 26009443
Alignment:
Q  63 tttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaact 142  Q
    |||| ||||||||||| ||||||||| | || || ||||| |||||||||||| ||||||||| |||| |||||||||||    
T  26009364 ttttcgaattctgctctttacccaaacgattttgctcattcccaaagtaaatgaccaaaatattcctacgcatgttaact 26009443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 38790884 - 38790958
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcattt-ccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||||||||| ||||||||||  | |||||| |||||||||| |||||||||| ||||| ||||||||||    
T  38790884 gaattctgctcattatccaaatggtttcgctcattttccaaagtaaaagtccaaaatacccctacgcatgttaac 38790958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 164 - 213
Target Start/End: Original strand, 149051 - 149100
Alignment:
Q  164 gctagtgttaaattttcgtgagttaattcacgctgcatgacttaagtcac 213  Q
    ||||||||||||||| |||||||||| ||||| |||||||||||||||||    
T  149051 gctagtgttaaatttgcgtgagttaagtcacgttgcatgacttaagtcac 149100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 123
Target Start/End: Original strand, 42548161 - 42548216
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaat 123  Q
    |||||||||||||||||||||| ||| || ||||| |||||||||| |||||||||    
T  42548161 gaattctgctcattacccaaatcgttttgctcattcccaaagtaaaagtccaaaat 42548216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 26012031 - 26011953
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 146  Q
    ||||||||||| ||||||||| | || |  |||||  ||||||||||| |||||||| | |||||||||||||||||||    
T  26012031 gaattctgctctttacccaaacgattttaatcattctcaaagtaaatgaccaaaatacctctatgcatgttaacttacg 26011953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 28138759 - 28138820
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccct 129  Q
    ||||||||||| ||||||||||| || || ||||| |||||||||||| |||||||| ||||    
T  28138759 gaattctgctctttacccaaatgattttgctcattcccaaagtaaatgaccaaaatacccct 28138820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 71 - 141
Target Start/End: Complemental strand, 5247 - 5177
Alignment:
Q  71 ttctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||||||||||||||| |  | ||||| |||||||||||| || ||||  ||||| ||||||||||    
T  5247 ttctgctcattacccaaatggattcgctcattcccaaagtaaatgaccgaaatgcccctacgcatgttaac 5177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 141
Target Start/End: Complemental strand, 1537329 - 1537251
Alignment:
Q  63 tttttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||||||||||||||||||||  ||   |||||||  |||||||||||| ||||||  ||||  ||||||||||    
T  1537329 tttttgaattctgctcattacccaaacagtatcgttcattctcaaagtaaatgttcaaaatgcccctgcgcatgttaac 1537251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 146
Target Start/End: Original strand, 30359702 - 30359781
Alignment:
Q  65 tttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 146  Q
    |||||||||||||| ||||||||   |||  | ||||| |||||||||| ||||||||  ||||||||| ||||||||||||    
T  30359702 tttgaattctgctctttacccaac--gttccgctcattcccaaagtaaaagtccaaaacgtccctatgcttgttaacttacg 30359781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 141
Target Start/End: Original strand, 1473 - 1548
Alignment:
Q  66 ttgaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaac 141  Q
    ||||||||||||||||||||||||||||  | ||||||  |||||||| |||||||||  ||||  ||||||||||    
T  1473 ttgaattctgctcattacccaaatggttccgctcatttttaaagtaaaagtccaaaatgcccctgcgcatgttaac 1548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 147
Target Start/End: Original strand, 8384 - 8463
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacgc 147  Q
    ||||||||||| ||||||||| | || || ||||||| |||||||||||  |||||| || || ||||||||||| ||||    
T  8384 gaattctgctctttacccaaacgtttctgctcatttctaaagtaaatgtgtaaaatacccttacgcatgttaactcacgc 8463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 146
Target Start/End: Complemental strand, 442 - 364
Alignment:
Q  68 gaattctgctcattacccaaatggttatgttcatttccaaagtaaatgtccaaaatatccctatgcatgttaacttacg 146  Q
    ||||| ||||| ||||||||||||||  | ||||| ||||||||||  ||| ||||  || ||||||||||||||||||    
T  442 gaattatgctctttacccaaatggtttcgctcattcccaaagtaaaaatcccaaatgcccttatgcatgttaacttacg 364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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