View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9604_low_22 (Length: 354)
Name: NF9604_low_22
Description: NF9604
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9604_low_22 |
 | |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 29820141 - 29819804
Alignment:
| Q |
1 |
ctcatatgagtataagtaggaatgattttcataatttgtatgatggcnnnnnnncaatacaaaactctttccgtagaaaaaaggttctacttgttcttga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
29820141 |
ctcatatgagtataagtaggaatgattttcataatttgtatgatggcaaaaaaacaatacaaaactctttccgtaggaaaaaggttctacttgttcttga |
29820042 |
T |
|
| Q |
101 |
tgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaagtagagtaataatcacaacgagagataaacacttg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29820041 |
tgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaagtagagtaataatcacaacgagagataaacacttg |
29819942 |
T |
|
| Q |
201 |
ttaatgacacatggagtacataaaacttatgaggtttggatgttattccaaaatgaagctcttaatctcttttgtttgaaagcctttaaaggagataaac |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29819941 |
ttaatgacacatggagtacataaaacttatgaggtttggatgttattccaaaatgaagctcttaatctcttttgtttgaaagcctttaaaggagataaac |
29819842 |
T |
|
| Q |
301 |
cacaagaaggctatttggatttgtccaaagaagtggtg |
338 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
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| T |
29819841 |
cacaagaaggctatttggatttgtccaaagaagtggtg |
29819804 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 9 - 338
Target Start/End: Complemental strand, 29828376 - 29828047
Alignment:
| Q |
9 |
agtataagtaggaatgattttcataatttgtatgatggcnnnnnnncaatacaaaactctttccgtagaaaaaaggttctacttgttcttgatgatgtga |
108 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||| | |||||||||||||||||||||||||||||||||| |
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| T |
29828376 |
agtataagtagaaatgattttcataatttgtatgatggcaaaaaaacaatacaaaattctttatgcagaaaaaaggttctacttgttcttgatgatgtga |
29828277 |
T |
|
| Q |
109 |
atgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaagtagagtaataatcacaacgagagataaacacttgttaatgac |
208 |
Q |
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||||| |||| |||||||||||| |||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| ||| || || |
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| T |
29828276 |
atgaaataaatcagttggagaatttggctgggaagcaagattggtttggtccaggaagtagagtaataatcacaacaagagataaacactggttgataac |
29828177 |
T |
|
| Q |
209 |
acatggagtacataaaacttatgaggtttggatgttattccaaaatgaagctcttaatctcttttgtttgaaagcctttaaaggagataaaccacaagaa |
308 |
Q |
| |
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||||||||||||| || ||||||||||| ||||| |||||||||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
29828176 |
acatggagtacatcaaccttatgaggttgggatgctattccaaaacgaagcccttaatgtcttttgtttgaaagcctttaaaggagataaaccacaagaa |
29828077 |
T |
|
| Q |
309 |
ggctatttggatttgtccaaagaagtggtg |
338 |
Q |
| |
|
||||||||||||||||| |||||||||||| |
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| T |
29828076 |
ggctatttggatttgtctaaagaagtggtg |
29828047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 29571891 - 29572228
Alignment:
| Q |
1 |
ctcatatgagtataagtaggaatgattttcataatttgtatgatggcnnnnnnncaatacaaaactctttccgtagaaaaaaggttctacttgttcttga |
100 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||| |
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| T |
29571891 |
ctcatctgagtataagtaggaatgattttcatgatttgtatgatgggaaaaaaacaatacaaaactctttatgcagaaaaaaggttctacttgttcttga |
29571990 |
T |
|
| Q |
101 |
tgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaagtagagtaataatcacaacgagagataaacacttg |
200 |
Q |
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||||||||||||| ||||||||||||||||| ||| |||||| ||||| ||||||||||||||||||||||||||||||||||| ||||| || |||||| |
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| T |
29571991 |
tgatgtgaatgaactaaaccagttggagaatttggttgggaaacaagattggtttggtccgggaagtagagtaataatcacaacaagagacaagcacttg |
29572090 |
T |
|
| Q |
201 |
ttaatgacacatggagtacataaaacttatgaggtttggatgttattccaaaatgaagctcttaatctcttttgtttgaaagcctttaaaggagataaac |
300 |
Q |
| |
|
||||||||||||||||||||||||| ||| | | | ||||||| | || |||| || ||| ||||||||||||||||||||||||||||||||||| |
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| T |
29572091 |
ctaatgacacatggagtacataaaacctataaaactggaatgttatgcaaacatgatgcccttgttctcttttgtttgaaagcctttaaaggagataaac |
29572190 |
T |
|
| Q |
301 |
cacaagaaggctatttggatttgtccaaagaagtggtg |
338 |
Q |
| |
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|||||||||| |||||||| || ||||||||||||||| |
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| T |
29572191 |
cacaagaagggtatttggacttatccaaagaagtggtg |
29572228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 78 - 291
Target Start/End: Complemental strand, 11124282 - 11124069
Alignment:
| Q |
78 |
aaaaaggttctacttgttcttgatgatgtgaatgaattaaaccagttggagaatatggctgggaagcaagactggtttggtccgggaagtagagtaataa |
177 |
Q |
| |
|
||||||||||| ||||||||||||||||||| ||||||| ||| ||||||||| | |||||||||||||| ||||||||||| ||||||||||| |||| |
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| T |
11124282 |
aaaaaggttcttcttgttcttgatgatgtgagcgaattaagccaattggagaatttagctgggaagcaagaatggtttggtccaggaagtagagttataa |
11124183 |
T |
|
| Q |
178 |
tcacaacgagagataaacacttgttaatgacacatggagtacataaaacttatgaggtttggatgttattccaaaatgaagctcttaatctcttttgttt |
277 |
Q |
| |
|
|||||| |||||||| ||||||||||||||||||||||| ||| |||||||| ||| | ||| | |||||||||| ||||| ||||| ||||| |
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| T |
11124182 |
tcacaagtagagataagcacttgttaatgacacatggagtgcatgaaacttataaggctaaaggcttagtaaaaaatgaagcacttaagctcttctgttt |
11124083 |
T |
|
| Q |
278 |
gaaagcctttaaag |
291 |
Q |
| |
|
|||||||||||||| |
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| T |
11124082 |
gaaagcctttaaag |
11124069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 95
Target Start/End: Original strand, 20895 - 20990
Alignment:
| Q |
1 |
ctcatatgagtataagtaggaatgattttcataatttgtatgatggc-nnnnnnncaatacaaaactctttccgtagaaaaaaggttctacttgtt |
95 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
20895 |
ctcatatgagtataagtaggaatgattttcataatttgtatgatggcaaaaaaaacaatacaaaactctttccgtagaaaaaaggttctacttgtt |
20990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 6589865 - 6589823
Alignment:
| Q |
150 |
tggtttggtccgggaagtagagtaataatcacaacgagagata |
192 |
Q |
| |
|
|||||||||||||| |||||| ||||||||||||| ||||||| |
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|
| T |
6589865 |
tggtttggtccggggagtagaataataatcacaacaagagata |
6589823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 150 - 192
Target Start/End: Original strand, 6713950 - 6713992
Alignment:
| Q |
150 |
tggtttggtccgggaagtagagtaataatcacaacgagagata |
192 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||||| |
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|
| T |
6713950 |
tggtttggtccggggagtagagtaatcatcacaacaagagata |
6713992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 8412959 - 8412999
Alignment:
| Q |
150 |
tggtttggtccgggaagtagagtaataatcacaacgagaga |
190 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| ||||| |
|
|
| T |
8412959 |
tggtttggtccgggaagtagaataatcatcacaacaagaga |
8412999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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